RNA–Protein interactions for RNA: ENST00000511985.1

PDGFC-207, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 725 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-207ENST00000511985 METTL3Q86U44 580 aaKnown RBP13.97□□□□□ -0.17
PDGFC-207ENST00000511985 SLC4A3P48751 1232 aa13.96□□□□□ -0.17
PDGFC-207ENST00000511985 MTRQ99707 1265 aa13.96□□□□□ -0.17
PDGFC-207ENST00000511985 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.95□□□□□ -0.18
PDGFC-207ENST00000511985 TULP1O00294 542 aaPredicted RBP13.94□□□□□ -0.18
PDGFC-207ENST00000511985 NECTIN2Q92692 538 aa13.94□□□□□ -0.18
PDGFC-207ENST00000511985 NLRP7Q8WX94 980 aa13.92□□□□□ -0.18
PDGFC-207ENST00000511985 ZNF516Q92618 1163 aa13.91□□□□□ -0.18
PDGFC-207ENST00000511985 IL21Q9HBE4 155 aa13.91□□□□□ -0.18
PDGFC-207ENST00000511985 COPS2P61201 443 aa13.9□□□□□ -0.18
PDGFC-207ENST00000511985 SLC10A3P09131 477 aa13.89□□□□□ -0.19
PDGFC-207ENST00000511985 PHOX2BQ99453 314 aa13.88□□□□□ -0.19
PDGFC-207ENST00000511985 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.86□□□□□ -0.19
PDGFC-207ENST00000511985 CFHP08603 1231 aa13.85□□□□□ -0.19
PDGFC-207ENST00000511985 PRR14Q9BWN1 585 aa13.84□□□□□ -0.19
PDGFC-207ENST00000511985 PCDHB3Q9Y5E6 796 aa13.84□□□□□ -0.19
PDGFC-207ENST00000511985 NKX2-3Q8TAU0 364 aa13.83□□□□□ -0.2
PDGFC-207ENST00000511985 KMT5BQ4FZB7 885 aa13.82□□□□□ -0.2
PDGFC-207ENST00000511985 BLOC1S3Q6QNY0 202 aa13.82□□□□□ -0.2
PDGFC-207ENST00000511985 DAXXQ9UER7 740 aaPredicted RBP13.82□□□□□ -0.2
PDGFC-207ENST00000511985 RGS20O76081 388 aa13.81□□□□□ -0.2
PDGFC-207ENST00000511985 MAP2K5Q13163 448 aa13.81□□□□□ -0.2
PDGFC-207ENST00000511985 LMOD2Q6P5Q4 547 aa13.81□□□□□ -0.2
PDGFC-207ENST00000511985 ACTN4O43707 911 aaKnown RBP13.8□□□□□ -0.2
PDGFC-207ENST00000511985 DDX11L8A8MPP1 907 aa13.78□□□□□ -0.2
PDGFC-207ENST00000511985 IRF6O14896 467 aa13.78□□□□□ -0.2
PDGFC-207ENST00000511985 ZPR1O75312 459 aa13.78□□□□□ -0.2
PDGFC-207ENST00000511985 BCANQ96GW7 911 aa13.78□□□□□ -0.2
PDGFC-207ENST00000511985 PPP1R18Q6NYC8 613 aa13.77□□□□□ -0.21
PDGFC-207ENST00000511985 RDH13Q8NBN7 331 aa13.77□□□□□ -0.21
PDGFC-207ENST00000511985 TLL1O43897 1013 aa13.74□□□□□ -0.21
PDGFC-207ENST00000511985 RSPH4AQ5TD94 716 aa13.74□□□□□ -0.21
PDGFC-207ENST00000511985 MINK1Q8N4C8 1332 aaPredicted RBP13.73□□□□□ -0.21
PDGFC-207ENST00000511985 CCDC102AQ96A19 550 aa13.73□□□□□ -0.21
PDGFC-207ENST00000511985 PUS10Q3MIT2 529 aaKnown RBP13.72□□□□□ -0.21
PDGFC-207ENST00000511985 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.71□□□□□ -0.21
PDGFC-207ENST00000511985 SULF1Q8IWU6 871 aa13.69□□□□□ -0.22
PDGFC-207ENST00000511985 MDM2Q00987 491 aaPredicted RBP13.68□□□□□ -0.22
PDGFC-207ENST00000511985 GCGRP47871 477 aa13.66□□□□□ -0.22
PDGFC-207ENST00000511985 FUT2Q10981 343 aa13.66□□□□□ -0.22
PDGFC-207ENST00000511985 ZC3H15Q8WU90 426 aaKnown RBP13.66□□□□□ -0.22
PDGFC-207ENST00000511985 NR1I2O75469 434 aa13.65□□□□□ -0.22
PDGFC-207ENST00000511985 SCUBE3Q8IX30 993 aa13.65□□□□□ -0.22
PDGFC-207ENST00000511985 ZMYND10O75800 440 aa13.63□□□□□ -0.23
PDGFC-207ENST00000511985 KRI1Q8N9T8 703 aaKnown RBP13.63□□□□□ -0.23
PDGFC-207ENST00000511985 IRX2Q9BZI1 471 aaPredicted RBP13.63□□□□□ -0.23
PDGFC-207ENST00000511985 PRKD2Q9BZL6 878 aa13.63□□□□□ -0.23
PDGFC-207ENST00000511985 GGCXP38435 758 aa13.62□□□□□ -0.23
PDGFC-207ENST00000511985 BARGINQ6ZT62 677 aa13.62□□□□□ -0.23
PDGFC-207ENST00000511985 CD46P15529 392 aa13.61□□□□□ -0.23
PDGFC-207ENST00000511985 MORN1Q5T089 497 aa13.61□□□□□ -0.23
PDGFC-207ENST00000511985 S1PR4O95977 384 aa13.6□□□□□ -0.23
PDGFC-207ENST00000511985 ADH1BP00325 375 aa13.6□□□□□ -0.23
PDGFC-207ENST00000511985 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
PDGFC-207ENST00000511985 RNF223E7ERA6 249 aa13.59□□□□□ -0.23
PDGFC-207ENST00000511985 PPEF1O14829 653 aaPredicted RBP13.59□□□□□ -0.23
PDGFC-207ENST00000511985 TMUB1Q9BVT8 246 aa13.59□□□□□ -0.23
PDGFC-207ENST00000511985 GPCPD1Q9NPB8 672 aa13.57□□□□□ -0.24
PDGFC-207ENST00000511985 SLC27A5Q9Y2P5 690 aa13.57□□□□□ -0.24
PDGFC-207ENST00000511985 SPSB2Q99619 263 aa13.56□□□□□ -0.24
PDGFC-207ENST00000511985 REPIN1Q9BWE0 567 aaKnown RBP13.56□□□□□ -0.24
PDGFC-207ENST00000511985 CLCN1P35523 988 aa13.55□□□□□ -0.24
PDGFC-207ENST00000511985 SLC6A16Q9GZN6 736 aa13.54□□□□□ -0.24
PDGFC-207ENST00000511985 THAP11Q96EK4 314 aa13.53□□□□□ -0.24
PDGFC-207ENST00000511985 FAM217BQ9NTX9 383 aaPredicted RBP13.53□□□□□ -0.24
PDGFC-207ENST00000511985 V9GY48 417 aaPredicted RBP13.53□□□□□ -0.24
PDGFC-207ENST00000511985 KDM4AO75164 1064 aa13.51□□□□□ -0.25
PDGFC-207ENST00000511985 EMID1Q96A84 441 aaPredicted RBP13.51□□□□□ -0.25
PDGFC-207ENST00000511985 ANKLE1Q8NAG6 615 aa13.5□□□□□ -0.25
PDGFC-207ENST00000511985 HLA-CQ95604 372 aa13.5□□□□□ -0.25
PDGFC-207ENST00000511985 FMNL1O95466 1100 aaPredicted RBP13.49□□□□□ -0.25
PDGFC-207ENST00000511985 GRIPAP1Q4V328 841 aa13.49□□□□□ -0.25
PDGFC-207ENST00000511985 RNF19BQ6ZMZ0 732 aa13.49□□□□□ -0.25
PDGFC-207ENST00000511985 TTLL12Q14166 644 aaPredicted RBP13.47□□□□□ -0.25
PDGFC-207ENST00000511985 BRICD5Q6PL45 260 aa13.47□□□□□ -0.25
PDGFC-207ENST00000511985 FAM160A2Q8N612 972 aaPredicted RBP13.47□□□□□ -0.25
PDGFC-207ENST00000511985 SLC19A1P41440 591 aa13.46□□□□□ -0.25
PDGFC-207ENST00000511985 PLA2G2CQ5R387 149 aa13.46□□□□□ -0.25
PDGFC-207ENST00000511985 PRDM9Q9NQV7 894 aa13.46□□□□□ -0.25
PDGFC-207ENST00000511985 SSTR3P32745 418 aaPredicted RBP13.45□□□□□ -0.26
PDGFC-207ENST00000511985 AMHR2Q16671 573 aa13.45□□□□□ -0.26
PDGFC-207ENST00000511985 HOXA2O43364 376 aa13.44□□□□□ -0.26
PDGFC-207ENST00000511985 GFRA3O60609 400 aa13.44□□□□□ -0.26
PDGFC-207ENST00000511985 GUCA2AQ02747 115 aa13.44□□□□□ -0.26
PDGFC-207ENST00000511985 LIAT1Q6ZQX7 453 aa13.44□□□□□ -0.26
PDGFC-207ENST00000511985 SALL2Q9Y467 1007 aaPredicted RBP13.44□□□□□ -0.26
PDGFC-207ENST00000511985 TRIM66O15016 1216 aa13.42□□□□□ -0.26
PDGFC-207ENST00000511985 USP46P62068 366 aa13.42□□□□□ -0.26
PDGFC-207ENST00000511985 GIGYF2Q6Y7W6 1299 aaKnown RBP13.41□□□□□ -0.26
PDGFC-207ENST00000511985 SPRYD7Q5W111 196 aa13.4□□□□□ -0.26
PDGFC-207ENST00000511985 Q6ZNB5 142 aa13.4□□□□□ -0.26
PDGFC-207ENST00000511985 NUTM1Q86Y26 1132 aa13.4□□□□□ -0.26
PDGFC-207ENST00000511985 Q3C1V9 767 aa13.39□□□□□ -0.27
PDGFC-207ENST00000511985 AK7Q96M32 723 aa13.39□□□□□ -0.27
PDGFC-207ENST00000511985 FCF1Q9Y324 198 aaKnown RBP13.39□□□□□ -0.27
PDGFC-207ENST00000511985 MSS51Q4VC12 460 aa13.38□□□□□ -0.27
PDGFC-207ENST00000511985 PARP9Q8IXQ6 854 aa13.38□□□□□ -0.27
PDGFC-207ENST00000511985 SLC24A3Q9HC58 644 aa13.38□□□□□ -0.27
PDGFC-207ENST00000511985 PDZRN3Q9UPQ7 1066 aa13.37□□□□□ -0.27
PDGFC-207ENST00000511985 LAPTM4AQ15012 233 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms