RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 SETBP1Q9Y6X0 1596 aa21.28■■□□□ 1
SCLT1-209ENST00000511426 PIK3C2GO75747 1445 aa21.28■■□□□ 1
SCLT1-209ENST00000511426 VGFO15240 615 aaPredicted RBP21.28■■□□□ 1
SCLT1-209ENST00000511426 CHGAP10645 457 aaKnown RBP21.27■■□□□ 1
SCLT1-209ENST00000511426 HIRIP3Q9BW71 556 aaPredicted RBP21.27■■□□□ 1
SCLT1-209ENST00000511426 CCDC7Q96M83 1385 aa21.26■□□□□ 0.99
SCLT1-209ENST00000511426 FBXO31Q5XUX0 539 aaPredicted RBP21.25■□□□□ 0.99
SCLT1-209ENST00000511426 WASHC2AQ641Q2 1341 aa21.25■□□□□ 0.99
SCLT1-209ENST00000511426 SCAF11Q99590 1463 aaKnown RBP21.25■□□□□ 0.99
SCLT1-209ENST00000511426 EIF3AQ14152 1382 aaKnown RBP21.24■□□□□ 0.99
SCLT1-209ENST00000511426 SLC24A1O60721 1099 aa21.24■□□□□ 0.99
SCLT1-209ENST00000511426 IQGAP1P46940 1657 aa21.24■□□□□ 0.99
SCLT1-209ENST00000511426 TNRQ92752 1358 aa21.23■□□□□ 0.99
SCLT1-209ENST00000511426 NBPF1Q3BBV0 1214 aa21.23■□□□□ 0.99
SCLT1-209ENST00000511426 ADGRF5Q8IZF2 1346 aa21.23■□□□□ 0.99
SCLT1-209ENST00000511426 FER1L4A9Z1Z3 1794 aa21.22■□□□□ 0.99
SCLT1-209ENST00000511426 NLRP1Q9C000 1473 aa21.22■□□□□ 0.99
SCLT1-209ENST00000511426 DDX10Q13206 875 aaKnown RBP21.21■□□□□ 0.99
SCLT1-209ENST00000511426 A2ML1A8K2U0 1454 aa21.21■□□□□ 0.99
SCLT1-209ENST00000511426 ST20-MTHFSA0A0A6YYL1 179 aa21.19■□□□□ 0.98
SCLT1-209ENST00000511426 C14orf93Q9H972 538 aaKnown RBP21.19■□□□□ 0.98
SCLT1-209ENST00000511426 STAG3Q9UJ98 1225 aa21.18■□□□□ 0.98
SCLT1-209ENST00000511426 KIF7Q2M1P5 1343 aa21.18■□□□□ 0.98
SCLT1-209ENST00000511426 C3P01024 1663 aa21.16■□□□□ 0.98
SCLT1-209ENST00000511426 HDGFP51858 240 aaKnown RBP21.15■□□□□ 0.98
SCLT1-209ENST00000511426 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.15■□□□□ 0.98
SCLT1-209ENST00000511426 ADGRB1O14514 1584 aa21.14■□□□□ 0.98
SCLT1-209ENST00000511426 MYO5BQ9ULV0 1848 aa21.14■□□□□ 0.97
SCLT1-209ENST00000511426 CFAP70Q5T0N1 1121 aa21.14■□□□□ 0.97
SCLT1-209ENST00000511426 C11orf95C9JLR9 678 aaPredicted RBP21.13■□□□□ 0.97
SCLT1-209ENST00000511426 MIER1Q8N108 512 aa21.13■□□□□ 0.97
SCLT1-209ENST00000511426 SBNO2Q9Y2G9 1366 aa21.13■□□□□ 0.97
SCLT1-209ENST00000511426 MYO3AQ8NEV4 1616 aa21.12■□□□□ 0.97
SCLT1-209ENST00000511426 RIMS2Q9UQ26 1411 aa21.11■□□□□ 0.97
SCLT1-209ENST00000511426 ADAMTSL3P82987 1691 aa21.11■□□□□ 0.97
SCLT1-209ENST00000511426 TESK2Q96S53 571 aa21.11■□□□□ 0.97
SCLT1-209ENST00000511426 TMF1P82094 1093 aa21.1■□□□□ 0.97
SCLT1-209ENST00000511426 CDCA8Q53HL2 280 aa21.1■□□□□ 0.97
SCLT1-209ENST00000511426 UBR1Q8IWV7 1749 aa21.09■□□□□ 0.97
SCLT1-209ENST00000511426 ANP32CO43423 234 aa21.08■□□□□ 0.96
SCLT1-209ENST00000511426 TMEM2Q9UHN6 1383 aa21.06■□□□□ 0.96
SCLT1-209ENST00000511426 ALKQ9UM73 1620 aa21.03■□□□□ 0.96
SCLT1-209ENST00000511426 SLIT1O75093 1534 aa21.03■□□□□ 0.96
SCLT1-209ENST00000511426 RIMS1Q86UR5 1692 aaKnown RBP21.02■□□□□ 0.96
SCLT1-209ENST00000511426 ARHGAP23Q9P227 1491 aa21.01■□□□□ 0.95
SCLT1-209ENST00000511426 CCER2I3L3R5 266 aa21.01■□□□□ 0.95
SCLT1-209ENST00000511426 CENPJQ9HC77 1338 aaPredicted RBP21■□□□□ 0.95
SCLT1-209ENST00000511426 DISP3Q9P2K9 1392 aa21■□□□□ 0.95
SCLT1-209ENST00000511426 ASXL1Q8IXJ9 1541 aa21■□□□□ 0.95
SCLT1-209ENST00000511426 CEBPAP49715 358 aaPredicted RBP20.99■□□□□ 0.95
SCLT1-209ENST00000511426 THEMISQ8N1K5 641 aaPredicted RBP20.98■□□□□ 0.95
SCLT1-209ENST00000511426 DLC1Q96QB1 1528 aa20.97■□□□□ 0.95
SCLT1-209ENST00000511426 ARHGEF28Q8N1W1 1705 aaKnown RBP20.97■□□□□ 0.95
SCLT1-209ENST00000511426 SETD1AO15047 1707 aaKnown RBP20.96■□□□□ 0.95
SCLT1-209ENST00000511426 NUTM2DQ5VT03 806 aaPredicted RBP20.96■□□□□ 0.95
SCLT1-209ENST00000511426 PUS7Q96PZ0 661 aaKnown RBP20.96■□□□□ 0.95
SCLT1-209ENST00000511426 YTHDC2Q9H6S0 1430 aaKnown RBP20.96■□□□□ 0.95
SCLT1-209ENST00000511426 PLEKHG1Q9ULL1 1385 aa20.96■□□□□ 0.95
SCLT1-209ENST00000511426 ZNF142P52746 1687 aaPredicted RBP20.96■□□□□ 0.95
SCLT1-209ENST00000511426 CEP170BQ9Y4F5 1589 aaPredicted RBP20.96■□□□□ 0.95
SCLT1-209ENST00000511426 NRXN3Q9Y4C0 1643 aa20.95■□□□□ 0.94
SCLT1-209ENST00000511426 KTN1Q86UP2 1357 aaKnown RBP20.95■□□□□ 0.94
SCLT1-209ENST00000511426 EID1Q9Y6B2 187 aa20.94■□□□□ 0.94
SCLT1-209ENST00000511426 QRICH2Q9H0J4 1663 aa20.94■□□□□ 0.94
SCLT1-209ENST00000511426 LRPPRCP42704 1394 aaKnown RBP20.94■□□□□ 0.94
SCLT1-209ENST00000511426 TMEM132EQ6IEE7 984 aa20.93■□□□□ 0.94
SCLT1-209ENST00000511426 TRAK1Q9UPV9 953 aa20.93■□□□□ 0.94
SCLT1-209ENST00000511426 POLR3GLQ9BT43 218 aa20.92■□□□□ 0.94
SCLT1-209ENST00000511426 PTPRMP28827 1452 aa20.92■□□□□ 0.94
SCLT1-209ENST00000511426 ABCC11Q96J66 1382 aa20.91■□□□□ 0.94
SCLT1-209ENST00000511426 DIP2AQ14689 1571 aa20.91■□□□□ 0.94
SCLT1-209ENST00000511426 TECPR2O15040 1411 aa20.9■□□□□ 0.94
SCLT1-209ENST00000511426 SIRT1Q96EB6 747 aa20.89■□□□□ 0.94
SCLT1-209ENST00000511426 PRKRIP1Q9H875 184 aaPredicted RBP20.89■□□□□ 0.94
SCLT1-209ENST00000511426 KNDC1Q76NI1 1749 aa20.89■□□□□ 0.93
SCLT1-209ENST00000511426 SETD1BQ9UPS6 1966 aaKnown RBP20.89■□□□□ 0.93
SCLT1-209ENST00000511426 MED14O60244 1454 aa20.87■□□□□ 0.93
SCLT1-209ENST00000511426 TXNDC2Q86VQ3 553 aa20.86■□□□□ 0.93
SCLT1-209ENST00000511426 FAM135BQ49AJ0 1406 aa20.86■□□□□ 0.93
SCLT1-209ENST00000511426 ADAMTS13Q76LX8 1427 aa20.86■□□□□ 0.93
SCLT1-209ENST00000511426 EVC2Q86UK5 1308 aa20.86■□□□□ 0.93
SCLT1-209ENST00000511426 NINLQ9Y2I6 1382 aa20.84■□□□□ 0.93
SCLT1-209ENST00000511426 CPS1P31327 1500 aa20.84■□□□□ 0.93
SCLT1-209ENST00000511426 MYOM1P52179 1685 aa20.84■□□□□ 0.93
SCLT1-209ENST00000511426 LTKP29376 864 aa20.83■□□□□ 0.93
SCLT1-209ENST00000511426 PER1O15534 1290 aaPredicted RBP20.82■□□□□ 0.92
SCLT1-209ENST00000511426 RALBP1Q15311 655 aa20.82■□□□□ 0.92
SCLT1-209ENST00000511426 TBX22Q9Y458 520 aa20.82■□□□□ 0.92
SCLT1-209ENST00000511426 METP08581 1390 aa20.82■□□□□ 0.92
SCLT1-209ENST00000511426 PIK3R4Q99570 1358 aa20.82■□□□□ 0.92
SCLT1-209ENST00000511426 TULP4Q9NRJ4 1543 aa20.81■□□□□ 0.92
SCLT1-209ENST00000511426 NPC1L1Q9UHC9 1359 aa20.81■□□□□ 0.92
SCLT1-209ENST00000511426 POGKQ9P215 609 aa20.8■□□□□ 0.92
SCLT1-209ENST00000511426 PRAM1Q96QH2 718 aa20.8■□□□□ 0.92
SCLT1-209ENST00000511426 STK26Q9P289 416 aa20.8■□□□□ 0.92
SCLT1-209ENST00000511426 PANK3Q9H999 370 aa20.79■□□□□ 0.92
SCLT1-209ENST00000511426 ATAD2Q6PL18 1390 aa20.79■□□□□ 0.92
SCLT1-209ENST00000511426 PLPPR3Q6T4P5 718 aa20.78■□□□□ 0.92
SCLT1-209ENST00000511426 BCANQ96GW7 911 aa20.78■□□□□ 0.92
SCLT1-209ENST00000511426 CENPBP07199 599 aaPredicted RBP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms