RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 SLF2Q8IX21 1173 aa9.64□□□□□ -0.87
HMGB3P13-201ENST00000511263 NRG2O14511 850 aaPredicted RBP9.63□□□□□ -0.87
HMGB3P13-201ENST00000511263 NUTM2FA1L443 756 aa9.61□□□□□ -0.87
HMGB3P13-201ENST00000511263 ZPR1O75312 459 aa9.6□□□□□ -0.87
HMGB3P13-201ENST00000511263 FCHSD2O94868 740 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 LMOD2Q6P5Q4 547 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 BLOC1S3Q6QNY0 202 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 GPIHBP1Q8IV16 184 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 PDZRN3Q9UPQ7 1066 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 PTGDRQ13258 359 aa9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 FAM161AQ3B820 660 aa9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 NECTIN2Q92692 538 aa9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 TLL1O43897 1013 aa9.57□□□□□ -0.88
HMGB3P13-201ENST00000511263 EMID1Q96A84 441 aaPredicted RBP9.57□□□□□ -0.88
HMGB3P13-201ENST00000511263 PCDHB3Q9Y5E6 796 aa9.57□□□□□ -0.88
HMGB3P13-201ENST00000511263 GGCXP38435 758 aa9.56□□□□□ -0.88
HMGB3P13-201ENST00000511263 ADGRG1Q9Y653 693 aa9.56□□□□□ -0.88
HMGB3P13-201ENST00000511263 RNF223E7ERA6 249 aa9.55□□□□□ -0.88
HMGB3P13-201ENST00000511263 HIC1Q14526 733 aa9.55□□□□□ -0.88
HMGB3P13-201ENST00000511263 RBM26Q5T8P6 1007 aaKnown RBP9.55□□□□□ -0.88
HMGB3P13-201ENST00000511263 DNAJB2P25686 324 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 SLC4A3P48751 1232 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 TRIM67Q6ZTA4 783 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 TMUB1Q9BVT8 246 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 TMEM134Q9H6X4 195 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 RCCD1A6NED2 376 aa9.52□□□□□ -0.89
HMGB3P13-201ENST00000511263 PPEF1O14829 653 aaPredicted RBP9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 SLC19A1P41440 591 aa9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 RBM46Q8TBY0 533 aaKnown RBP9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 PRR14Q9BWN1 585 aa9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 GNPATO15228 680 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 S1PR4O95977 384 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 CFHP08603 1231 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 SLC10A3P09131 477 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 ACTN4O43707 911 aaKnown RBP9.48□□□□□ -0.89
HMGB3P13-201ENST00000511263 ZNF787Q6DD87 383 aa9.48□□□□□ -0.89
HMGB3P13-201ENST00000511263 SPRYD7Q5W111 196 aa9.46□□□□□ -0.9
HMGB3P13-201ENST00000511263 LIAT1Q6ZQX7 453 aa9.46□□□□□ -0.9
HMGB3P13-201ENST00000511263 OATP04181 439 aa9.45□□□□□ -0.9
HMGB3P13-201ENST00000511263 KMT5BQ4FZB7 885 aa9.45□□□□□ -0.9
HMGB3P13-201ENST00000511263 KRI1Q8N9T8 703 aaKnown RBP9.45□□□□□ -0.9
HMGB3P13-201ENST00000511263 ANKLE1Q8NAG6 615 aa9.44□□□□□ -0.9
HMGB3P13-201ENST00000511263 PLA2G2CQ5R387 149 aa9.43□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZC3H15Q8WU90 426 aaKnown RBP9.43□□□□□ -0.9
HMGB3P13-201ENST00000511263 MINK1Q8N4C8 1332 aaPredicted RBP9.42□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZNF598Q86UK7 904 aaKnown RBP9.42□□□□□ -0.9
HMGB3P13-201ENST00000511263 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 TNFRSF10AO00220 468 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 ADH1BP00325 375 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 MYT1Q01538 1121 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 MAP2K5Q13163 448 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 PUS10Q3MIT2 529 aaKnown RBP9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 PXYLP1Q8TE99 480 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZNF775Q96BV0 537 aaPredicted RBP9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 POTECB2RU33 542 aa9.4□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZNF697Q5TEC3 545 aa9.4□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZMYND10O75800 440 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 PKDCCQ504Y2 493 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 BARGINQ6ZT62 677 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 SCUBE3Q8IX30 993 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 GPR37O15354 613 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 GDF9O60383 454 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 NR1I2O75469 434 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20EP86478 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20CP86479 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20DP86480 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20BP86481 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20AP86496 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 SLC6A16Q9GZN6 736 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 FECHP22830 423 aa9.37□□□□□ -0.91
HMGB3P13-201ENST00000511263 METTL3Q86U44 580 aaKnown RBP9.37□□□□□ -0.91
HMGB3P13-201ENST00000511263 DGAT1O75907 488 aa9.36□□□□□ -0.91
HMGB3P13-201ENST00000511263 FAM187AA6NFU0 413 aa9.35□□□□□ -0.91
HMGB3P13-201ENST00000511263 IRF6O14896 467 aa9.35□□□□□ -0.91
HMGB3P13-201ENST00000511263 NLRP7Q8WX94 980 aa9.35□□□□□ -0.91
HMGB3P13-201ENST00000511263 RSPH4AQ5TD94 716 aa9.34□□□□□ -0.91
HMGB3P13-201ENST00000511263 ST8SIA5O15466 376 aa9.33□□□□□ -0.92
HMGB3P13-201ENST00000511263 AK7Q96M32 723 aa9.33□□□□□ -0.92
HMGB3P13-201ENST00000511263 SPSB2Q99619 263 aa9.33□□□□□ -0.92
HMGB3P13-201ENST00000511263 TPRNQ4KMQ1 711 aa9.32□□□□□ -0.92
HMGB3P13-201ENST00000511263 PKD2L1Q9P0L9 805 aa9.32□□□□□ -0.92
HMGB3P13-201ENST00000511263 FOXC1Q12948 553 aa9.3□□□□□ -0.92
HMGB3P13-201ENST00000511263 MORN1Q5T089 497 aa9.3□□□□□ -0.92
HMGB3P13-201ENST00000511263 CCDC102AQ96A19 550 aa9.3□□□□□ -0.92
HMGB3P13-201ENST00000511263 FUT2Q10981 343 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 RDH13Q8NBN7 331 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 THAP11Q96EK4 314 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 PHOX2BQ99453 314 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 DDX11L8A8MPP1 907 aa9.28□□□□□ -0.92
HMGB3P13-201ENST00000511263 SULF1Q8IWU6 871 aa9.28□□□□□ -0.92
HMGB3P13-201ENST00000511263 AAASQ9NRG9 546 aa9.28□□□□□ -0.92
HMGB3P13-201ENST00000511263 CLCN1P35523 988 aa9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 FAM160A2Q8N612 972 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 DAXXQ9UER7 740 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 FCF1Q9Y324 198 aaKnown RBP9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 PRDM9Q9NQV7 894 aa9.26□□□□□ -0.93
HMGB3P13-201ENST00000511263 DACH1Q9UI36 760 aa9.26□□□□□ -0.93
HMGB3P13-201ENST00000511263 SLC27A5Q9Y2P5 690 aa9.26□□□□□ -0.93
HMGB3P13-201ENST00000511263 SLC24A3Q9HC58 644 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms