RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 SLF2Q8IX21 1173 aa9.64□□□□□ -0.87
HMGB3P13-201ENST00000511263 NRG2O14511 850 aaPredicted RBP9.63□□□□□ -0.87
HMGB3P13-201ENST00000511263 NUTM2FA1L443 756 aa9.61□□□□□ -0.87
HMGB3P13-201ENST00000511263 ZPR1O75312 459 aa9.6□□□□□ -0.87
HMGB3P13-201ENST00000511263 FCHSD2O94868 740 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 LMOD2Q6P5Q4 547 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 BLOC1S3Q6QNY0 202 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 GPIHBP1Q8IV16 184 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 PDZRN3Q9UPQ7 1066 aa9.59□□□□□ -0.87
HMGB3P13-201ENST00000511263 PTGDRQ13258 359 aa9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 FAM161AQ3B820 660 aa9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 NECTIN2Q92692 538 aa9.58□□□□□ -0.88
HMGB3P13-201ENST00000511263 TLL1O43897 1013 aa9.57□□□□□ -0.88
HMGB3P13-201ENST00000511263 EMID1Q96A84 441 aaPredicted RBP9.57□□□□□ -0.88
HMGB3P13-201ENST00000511263 PCDHB3Q9Y5E6 796 aa9.57□□□□□ -0.88
HMGB3P13-201ENST00000511263 GGCXP38435 758 aa9.56□□□□□ -0.88
HMGB3P13-201ENST00000511263 ADGRG1Q9Y653 693 aa9.56□□□□□ -0.88
HMGB3P13-201ENST00000511263 RNF223E7ERA6 249 aa9.55□□□□□ -0.88
HMGB3P13-201ENST00000511263 HIC1Q14526 733 aa9.55□□□□□ -0.88
HMGB3P13-201ENST00000511263 RBM26Q5T8P6 1007 aaKnown RBP9.55□□□□□ -0.88
HMGB3P13-201ENST00000511263 DNAJB2P25686 324 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 SLC4A3P48751 1232 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 TRIM67Q6ZTA4 783 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 TMUB1Q9BVT8 246 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 TMEM134Q9H6X4 195 aa9.54□□□□□ -0.88
HMGB3P13-201ENST00000511263 RCCD1A6NED2 376 aa9.52□□□□□ -0.89
HMGB3P13-201ENST00000511263 PPEF1O14829 653 aaPredicted RBP9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 SLC19A1P41440 591 aa9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 RBM46Q8TBY0 533 aaKnown RBP9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 PRR14Q9BWN1 585 aa9.51□□□□□ -0.89
HMGB3P13-201ENST00000511263 GNPATO15228 680 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 S1PR4O95977 384 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 CFHP08603 1231 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 SLC10A3P09131 477 aa9.49□□□□□ -0.89
HMGB3P13-201ENST00000511263 ACTN4O43707 911 aaKnown RBP9.48□□□□□ -0.89
HMGB3P13-201ENST00000511263 ZNF787Q6DD87 383 aa9.48□□□□□ -0.89
HMGB3P13-201ENST00000511263 SPRYD7Q5W111 196 aa9.46□□□□□ -0.9
HMGB3P13-201ENST00000511263 LIAT1Q6ZQX7 453 aa9.46□□□□□ -0.9
HMGB3P13-201ENST00000511263 OATP04181 439 aa9.45□□□□□ -0.9
HMGB3P13-201ENST00000511263 KMT5BQ4FZB7 885 aa9.45□□□□□ -0.9
HMGB3P13-201ENST00000511263 KRI1Q8N9T8 703 aaKnown RBP9.45□□□□□ -0.9
HMGB3P13-201ENST00000511263 ANKLE1Q8NAG6 615 aa9.44□□□□□ -0.9
HMGB3P13-201ENST00000511263 PLA2G2CQ5R387 149 aa9.43□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZC3H15Q8WU90 426 aaKnown RBP9.43□□□□□ -0.9
HMGB3P13-201ENST00000511263 MINK1Q8N4C8 1332 aaPredicted RBP9.42□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZNF598Q86UK7 904 aaKnown RBP9.42□□□□□ -0.9
HMGB3P13-201ENST00000511263 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 TNFRSF10AO00220 468 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 ADH1BP00325 375 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 MYT1Q01538 1121 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 MAP2K5Q13163 448 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 PUS10Q3MIT2 529 aaKnown RBP9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 PXYLP1Q8TE99 480 aa9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZNF775Q96BV0 537 aaPredicted RBP9.41□□□□□ -0.9
HMGB3P13-201ENST00000511263 POTECB2RU33 542 aa9.4□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZNF697Q5TEC3 545 aa9.4□□□□□ -0.9
HMGB3P13-201ENST00000511263 ZMYND10O75800 440 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 PKDCCQ504Y2 493 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 BARGINQ6ZT62 677 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 SCUBE3Q8IX30 993 aa9.39□□□□□ -0.91
HMGB3P13-201ENST00000511263 GPR37O15354 613 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 GDF9O60383 454 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 NR1I2O75469 434 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20EP86478 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20CP86479 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20DP86480 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20BP86481 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 PRR20AP86496 221 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 SLC6A16Q9GZN6 736 aa9.38□□□□□ -0.91
HMGB3P13-201ENST00000511263 FECHP22830 423 aa9.37□□□□□ -0.91
HMGB3P13-201ENST00000511263 METTL3Q86U44 580 aaKnown RBP9.37□□□□□ -0.91
HMGB3P13-201ENST00000511263 DGAT1O75907 488 aa9.36□□□□□ -0.91
HMGB3P13-201ENST00000511263 FAM187AA6NFU0 413 aa9.35□□□□□ -0.91
HMGB3P13-201ENST00000511263 IRF6O14896 467 aa9.35□□□□□ -0.91
HMGB3P13-201ENST00000511263 NLRP7Q8WX94 980 aa9.35□□□□□ -0.91
HMGB3P13-201ENST00000511263 RSPH4AQ5TD94 716 aa9.34□□□□□ -0.91
HMGB3P13-201ENST00000511263 ST8SIA5O15466 376 aa9.33□□□□□ -0.92
HMGB3P13-201ENST00000511263 AK7Q96M32 723 aa9.33□□□□□ -0.92
HMGB3P13-201ENST00000511263 SPSB2Q99619 263 aa9.33□□□□□ -0.92
HMGB3P13-201ENST00000511263 TPRNQ4KMQ1 711 aa9.32□□□□□ -0.92
HMGB3P13-201ENST00000511263 PKD2L1Q9P0L9 805 aa9.32□□□□□ -0.92
HMGB3P13-201ENST00000511263 FOXC1Q12948 553 aa9.3□□□□□ -0.92
HMGB3P13-201ENST00000511263 MORN1Q5T089 497 aa9.3□□□□□ -0.92
HMGB3P13-201ENST00000511263 CCDC102AQ96A19 550 aa9.3□□□□□ -0.92
HMGB3P13-201ENST00000511263 FUT2Q10981 343 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 RDH13Q8NBN7 331 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 THAP11Q96EK4 314 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 PHOX2BQ99453 314 aa9.29□□□□□ -0.92
HMGB3P13-201ENST00000511263 DDX11L8A8MPP1 907 aa9.28□□□□□ -0.92
HMGB3P13-201ENST00000511263 SULF1Q8IWU6 871 aa9.28□□□□□ -0.92
HMGB3P13-201ENST00000511263 AAASQ9NRG9 546 aa9.28□□□□□ -0.92
HMGB3P13-201ENST00000511263 CLCN1P35523 988 aa9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 FAM160A2Q8N612 972 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 DAXXQ9UER7 740 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 FCF1Q9Y324 198 aaKnown RBP9.27□□□□□ -0.93
HMGB3P13-201ENST00000511263 PRDM9Q9NQV7 894 aa9.26□□□□□ -0.93
HMGB3P13-201ENST00000511263 DACH1Q9UI36 760 aa9.26□□□□□ -0.93
HMGB3P13-201ENST00000511263 SLC27A5Q9Y2P5 690 aa9.26□□□□□ -0.93
HMGB3P13-201ENST00000511263 SLC24A3Q9HC58 644 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms