RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DDX11Q96FC9 970 aa4.43□□□□□ -1.7
USP53-205ENST00000509769 U2SURPO15042 1029 aaKnown RBP4.42□□□□□ -1.7
USP53-205ENST00000509769 HSPA2P54652 639 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 GIMAP7Q8NHV1 300 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 PLCD4Q9BRC7 762 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 RTN4Q9NQC3 1192 aaKnown RBP4.42□□□□□ -1.7
USP53-205ENST00000509769 SUPT16HQ9Y5B9 1047 aaKnown RBP4.42□□□□□ -1.7
USP53-205ENST00000509769 ARHGEF40Q8TER5 1519 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 DYDC1Q8WWB3 177 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 DENND4BO75064 1496 aaPredicted RBP4.42□□□□□ -1.7
USP53-205ENST00000509769 KIAA1328Q86T90 577 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 CREBRFQ8IUR6 639 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 KNSTRNQ9Y448 316 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 TTC37Q6PGP7 1564 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 LIG1P18858 919 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 MYO6Q9UM54 1294 aa4.42□□□□□ -1.7
USP53-205ENST00000509769 PCDH10Q9P2E7 1040 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 TPM1P09493 284 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 TMC1Q8TDI8 760 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 ZNF622Q969S3 477 aaKnown RBP eCLIP4.41□□□□□ -1.7
USP53-205ENST00000509769 CCDC39Q9UFE4 941 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 ATP6V1DQ9Y5K8 247 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 CUL7Q14999 1698 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 GOLGA6L10A0A0M3HER8 536 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 MPHOSPH10O00566 681 aaKnown RBP4.41□□□□□ -1.7
USP53-205ENST00000509769 NF2P35240 595 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 SARNPP82979 210 aaKnown RBP4.41□□□□□ -1.7
USP53-205ENST00000509769 PDCL3Q9H2J4 239 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 SWAP70Q9UH65 585 aa4.41□□□□□ -1.7
USP53-205ENST00000509769 MRE11P49959 708 aa4.4□□□□□ -1.7
USP53-205ENST00000509769 TMX4Q9H1E5 349 aaPredicted RBP4.4□□□□□ -1.7
USP53-205ENST00000509769 SUDS3Q9H7L9 328 aaPredicted RBP4.4□□□□□ -1.7
USP53-205ENST00000509769 PPP6R1Q9UPN7 881 aa4.4□□□□□ -1.7
USP53-205ENST00000509769 ZFYVE16Q7Z3T8 1539 aa4.4□□□□□ -1.7
USP53-205ENST00000509769 H0YHG0 523 aa4.4□□□□□ -1.71
USP53-205ENST00000509769 MEX3CQ5U5Q3 659 aaKnown RBP4.4□□□□□ -1.71
USP53-205ENST00000509769 TULP1O00294 542 aaPredicted RBP4.4□□□□□ -1.71
USP53-205ENST00000509769 SPATA24Q86W54 205 aa4.4□□□□□ -1.71
USP53-205ENST00000509769 CCDC125Q86Z20 511 aa4.4□□□□□ -1.71
USP53-205ENST00000509769 MIPOL1Q8TD10 442 aa4.4□□□□□ -1.71
USP53-205ENST00000509769 RBM33Q96EV2 1170 aaKnown RBP4.4□□□□□ -1.71
USP53-205ENST00000509769 GOLGA6L9A6NEM1 432 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 EIF3JO75822 258 aaKnown RBP4.39□□□□□ -1.71
USP53-205ENST00000509769 LETM1O95202 739 aaPredicted RBP4.39□□□□□ -1.71
USP53-205ENST00000509769 PLPPR3Q6T4P5 718 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 PRPF40AO75400 957 aaKnown RBP4.39□□□□□ -1.71
USP53-205ENST00000509769 KIAA0754O94854 1291 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 PIP4K2BP78356 416 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 LMOD2Q6P5Q4 547 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 CHMP4AQ9BY43 222 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 C9orf84Q5VXU9 1444 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 CUX1P39880 1505 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 HSPA1LP34931 641 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 RABEP1Q15276 862 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 CDCA8Q53HL2 280 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 PLA2R1Q13018 1463 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 AAMPQ13685 434 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 WDR66Q8TBY9 1149 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 RUFY1Q96T51 708 aa4.39□□□□□ -1.71
USP53-205ENST00000509769 KIF2AO00139 706 aaPredicted RBP4.38□□□□□ -1.71
USP53-205ENST00000509769 NPATQ14207 1427 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 TRAPPC8Q9Y2L5 1435 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 ABCA8O94911 1581 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 RALBP1Q15311 655 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 TTLL5Q6EMB2 1281 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 GTPBP4Q9BZE4 634 aaKnown RBP4.38□□□□□ -1.71
USP53-205ENST00000509769 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.38□□□□□ -1.71
USP53-205ENST00000509769 LRRC9Q6ZRR7 1453 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 NCOA1Q15788 1441 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 FAM193AP78312 1265 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 MICALCLQ6ZW33 695 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 FAM114A1Q8IWE2 563 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 FER1L4A9Z1Z3 1794 aa4.38□□□□□ -1.71
USP53-205ENST00000509769 AKAP17AQ02040 695 aaKnown RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 CCDC173Q0VFZ6 552 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 SEPT14Q6ZU15 432 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 TXLNBQ8N3L3 684 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 SLC4A1APQ9BWU0 796 aaKnown RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 STK31Q9BXU1 1019 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 MRS2Q9HD23 443 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 KIAA1211Q6ZU35 1233 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 AEBP1Q8IUX7 1158 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 ZCCHC11Q5TAX3 1644 aaKnown RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 CDK12Q9NYV4 1490 aaPredicted RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 ERLIN1O75477 346 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 TSR1Q2NL82 804 aaKnown RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 IL27Q8NEV9 243 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 GBP3Q9H0R5 595 aa4.37□□□□□ -1.71
USP53-205ENST00000509769 HSPA5P11021 654 aaKnown RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 NAP1L2Q9ULW6 460 aaPredicted RBP4.37□□□□□ -1.71
USP53-205ENST00000509769 COL17A1Q9UMD9 1497 aaPredicted RBP4.36□□□□□ -1.71
USP53-205ENST00000509769 MCM3P25205 808 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 TRIM52Q96A61 297 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 KCNH8Q96L42 1107 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.36□□□□□ -1.71
USP53-205ENST00000509769 V9GYY5 206 aaPredicted RBP4.36□□□□□ -1.71
USP53-205ENST00000509769 FHOD3Q2V2M9 1422 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 ATP10AO60312 1499 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 NUTM1Q86Y26 1132 aa4.36□□□□□ -1.71
USP53-205ENST00000509769 TRIM6-TRIM34B2RNG4 842 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms