RNA–Protein interactions for RNA: ENST00000508499.5

USP46-207, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2 BASIC

Gene USP46, Length 1,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-207ENST00000508499 KDM4FA0A1W2PPD8 638 aa12.68□□□□□ -0.38
USP46-207ENST00000508499 SLC52A1Q9NWF4 448 aa12.68□□□□□ -0.38
USP46-207ENST00000508499 UBR1Q8IWV7 1749 aa12.66□□□□□ -0.38
USP46-207ENST00000508499 TMEM131LA2VDJ0 1609 aa12.66□□□□□ -0.38
USP46-207ENST00000508499 CCDC144AA2RUR9 1427 aa12.66□□□□□ -0.38
USP46-207ENST00000508499 TNRQ92752 1358 aa12.65□□□□□ -0.38
USP46-207ENST00000508499 ADGRB3O60242 1522 aa12.65□□□□□ -0.38
USP46-207ENST00000508499 IFT172Q9UG01 1749 aa12.64□□□□□ -0.39
USP46-207ENST00000508499 MYO5BQ9ULV0 1848 aa12.63□□□□□ -0.39
USP46-207ENST00000508499 SPATA31E1Q6ZUB1 1445 aa12.63□□□□□ -0.39
USP46-207ENST00000508499 CEP170BQ9Y4F5 1589 aaPredicted RBP12.63□□□□□ -0.39
USP46-207ENST00000508499 FBXO31Q5XUX0 539 aaPredicted RBP12.62□□□□□ -0.39
USP46-207ENST00000508499 UGGT1Q9NYU2 1555 aa12.62□□□□□ -0.39
USP46-207ENST00000508499 A2ML1A8K2U0 1454 aa12.62□□□□□ -0.39
USP46-207ENST00000508499 TIMELESSQ9UNS1 1208 aa12.62□□□□□ -0.39
USP46-207ENST00000508499 PPLO60437 1756 aa12.6□□□□□ -0.39
USP46-207ENST00000508499 CEBPAP49715 358 aaPredicted RBP12.6□□□□□ -0.39
USP46-207ENST00000508499 SLIT1O75093 1534 aa12.59□□□□□ -0.39
USP46-207ENST00000508499 IDI1Q13907 227 aa12.59□□□□□ -0.39
USP46-207ENST00000508499 CCER1Q8TC90 406 aaPredicted RBP12.59□□□□□ -0.39
USP46-207ENST00000508499 STAC3Q96MF2 364 aa12.59□□□□□ -0.39
USP46-207ENST00000508499 UHRF1BP1Q6BDS2 1440 aa12.58□□□□□ -0.39
USP46-207ENST00000508499 ARHGAP23Q9P227 1491 aa12.58□□□□□ -0.4
USP46-207ENST00000508499 ZFYVE9O95405 1425 aa12.57□□□□□ -0.4
USP46-207ENST00000508499 POLA2Q14181 598 aa12.56□□□□□ -0.4
USP46-207ENST00000508499 RPGRIP1LQ68CZ1 1315 aa12.56□□□□□ -0.4
USP46-207ENST00000508499 NEXMIFQ5QGS0 1516 aa12.56□□□□□ -0.4
USP46-207ENST00000508499 MYOM2P54296 1465 aa12.55□□□□□ -0.4
USP46-207ENST00000508499 POLR1AO95602 1720 aaPredicted RBP12.55□□□□□ -0.4
USP46-207ENST00000508499 LMTK3Q96Q04 1460 aa12.54□□□□□ -0.4
USP46-207ENST00000508499 NRXN1Q9ULB1 1477 aa12.54□□□□□ -0.4
USP46-207ENST00000508499 ZBTB22O15209 634 aa12.54□□□□□ -0.4
USP46-207ENST00000508499 AKT1S1Q96B36 256 aa12.54□□□□□ -0.4
USP46-207ENST00000508499 KIAA1210Q9ULL0 1709 aa12.53□□□□□ -0.4
USP46-207ENST00000508499 SIN3AQ96ST3 1273 aa12.53□□□□□ -0.4
USP46-207ENST00000508499 TMEM2Q9UHN6 1383 aa12.52□□□□□ -0.41
USP46-207ENST00000508499 THEMISQ8N1K5 641 aaPredicted RBP12.52□□□□□ -0.41
USP46-207ENST00000508499 FOXD4L1Q9NU39 408 aa12.52□□□□□ -0.41
USP46-207ENST00000508499 LAMC1P11047 1609 aa12.51□□□□□ -0.41
USP46-207ENST00000508499 SETBP1Q9Y6X0 1596 aa12.5□□□□□ -0.41
USP46-207ENST00000508499 MED14O60244 1454 aa12.5□□□□□ -0.41
USP46-207ENST00000508499 TONSLQ96HA7 1378 aa12.49□□□□□ -0.41
USP46-207ENST00000508499 HDGFP51858 240 aaKnown RBP12.49□□□□□ -0.41
USP46-207ENST00000508499 SETD1AO15047 1707 aaKnown RBP12.49□□□□□ -0.41
USP46-207ENST00000508499 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP46-207ENST00000508499 RIMS2Q9UQ26 1411 aa12.48□□□□□ -0.41
USP46-207ENST00000508499 SCAF11Q99590 1463 aaKnown RBP12.48□□□□□ -0.41
USP46-207ENST00000508499 NRXN3Q9Y4C0 1643 aa12.48□□□□□ -0.41
USP46-207ENST00000508499 STRCQ7RTU9 1775 aa12.47□□□□□ -0.41
USP46-207ENST00000508499 PIK3C2GO75747 1445 aa12.47□□□□□ -0.41
USP46-207ENST00000508499 DIP2AQ14689 1571 aa12.47□□□□□ -0.41
USP46-207ENST00000508499 L3MBTL2Q969R5 705 aa12.47□□□□□ -0.41
USP46-207ENST00000508499 STAG3Q9UJ98 1225 aa12.47□□□□□ -0.41
USP46-207ENST00000508499 TRPM1Q7Z4N2 1603 aa12.47□□□□□ -0.41
USP46-207ENST00000508499 VGFO15240 615 aaPredicted RBP12.46□□□□□ -0.41
USP46-207ENST00000508499 PRAG1Q86YV5 1406 aa12.46□□□□□ -0.42
USP46-207ENST00000508499 MYCNP04198 464 aaPredicted RBP12.45□□□□□ -0.42
USP46-207ENST00000508499 ZEB1P37275 1124 aaPredicted RBP12.45□□□□□ -0.42
USP46-207ENST00000508499 NEUROD1Q13562 356 aa12.45□□□□□ -0.42
USP46-207ENST00000508499 PLEKHG1Q9ULL1 1385 aa12.45□□□□□ -0.42
USP46-207ENST00000508499 IQGAP1P46940 1657 aa12.45□□□□□ -0.42
USP46-207ENST00000508499 PPP1R15AO75807 674 aaPredicted RBP12.44□□□□□ -0.42
USP46-207ENST00000508499 PIP4P2Q8N4L2 257 aa12.44□□□□□ -0.42
USP46-207ENST00000508499 RGL3Q3MIN7 710 aa12.43□□□□□ -0.42
USP46-207ENST00000508499 ZNF326Q5BKZ1 582 aaKnown RBP12.43□□□□□ -0.42
USP46-207ENST00000508499 DCAF11Q8TEB1 546 aa12.43□□□□□ -0.42
USP46-207ENST00000508499 EID1Q9Y6B2 187 aa12.43□□□□□ -0.42
USP46-207ENST00000508499 CHGAP10645 457 aaKnown RBP12.42□□□□□ -0.42
USP46-207ENST00000508499 ANKLE2Q86XL3 938 aa12.42□□□□□ -0.42
USP46-207ENST00000508499 ALKQ9UM73 1620 aa12.42□□□□□ -0.42
USP46-207ENST00000508499 RALGAPBQ86X10 1494 aa12.41□□□□□ -0.42
USP46-207ENST00000508499 LTKP29376 864 aa12.41□□□□□ -0.42
USP46-207ENST00000508499 GPRASP1Q5JY77 1395 aa12.4□□□□□ -0.42
USP46-207ENST00000508499 TXNDC2Q86VQ3 553 aa12.4□□□□□ -0.42
USP46-207ENST00000508499 ADAMTS13Q76LX8 1427 aa12.4□□□□□ -0.42
USP46-207ENST00000508499 ADGRB1O14514 1584 aa12.4□□□□□ -0.42
USP46-207ENST00000508499 KNDC1Q76NI1 1749 aa12.4□□□□□ -0.42
USP46-207ENST00000508499 CHD2O14647 1828 aaKnown RBP12.4□□□□□ -0.43
USP46-207ENST00000508499 PIK3R4Q99570 1358 aa12.4□□□□□ -0.43
USP46-207ENST00000508499 ADGRF5Q8IZF2 1346 aa12.39□□□□□ -0.43
USP46-207ENST00000508499 NPHP4O75161 1426 aaPredicted RBP12.38□□□□□ -0.43
USP46-207ENST00000508499 C14orf93Q9H972 538 aaKnown RBP12.38□□□□□ -0.43
USP46-207ENST00000508499 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
USP46-207ENST00000508499 ZBTB12Q9Y330 459 aaPredicted RBP12.37□□□□□ -0.43
USP46-207ENST00000508499 TBX22Q9Y458 520 aa12.37□□□□□ -0.43
USP46-207ENST00000508499 ASXL1Q8IXJ9 1541 aa12.37□□□□□ -0.43
USP46-207ENST00000508499 NWD1Q149M9 1564 aa12.36□□□□□ -0.43
USP46-207ENST00000508499 XRN1Q8IZH2 1706 aaKnown RBP12.36□□□□□ -0.43
USP46-207ENST00000508499 NBPF8Q3BBV2 869 aa12.36□□□□□ -0.43
USP46-207ENST00000508499 TECPR2O15040 1411 aa12.35□□□□□ -0.43
USP46-207ENST00000508499 DLC1Q96QB1 1528 aa12.34□□□□□ -0.43
USP46-207ENST00000508499 ARHGEF28Q8N1W1 1705 aaKnown RBP12.34□□□□□ -0.43
USP46-207ENST00000508499 HAX1O00165 279 aa12.34□□□□□ -0.43
USP46-207ENST00000508499 KDM2AQ9Y2K7 1162 aa12.34□□□□□ -0.43
USP46-207ENST00000508499 CPS1P31327 1500 aa12.34□□□□□ -0.43
USP46-207ENST00000508499 HSPA2P54652 639 aa12.33□□□□□ -0.44
USP46-207ENST00000508499 ABCC11Q96J66 1382 aa12.31□□□□□ -0.44
USP46-207ENST00000508499 NCKAP5LQ9HCH0 1330 aa12.31□□□□□ -0.44
USP46-207ENST00000508499 NKTRP30414 1462 aaKnown RBP12.31□□□□□ -0.44
USP46-207ENST00000508499 PTCH1Q13635 1447 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms