RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 LSM11P83369 360 aaKnown RBP eCLIP7.65□□□□□ -1.18
USP53-204ENST00000507906 POTEEQ6S8J3 1075 aa7.65□□□□□ -1.18
USP53-204ENST00000507906 TBC1D2Q9BYX2 928 aa7.65□□□□□ -1.18
USP53-204ENST00000507906 CERKQ8TCT0 537 aa7.64□□□□□ -1.19
USP53-204ENST00000507906 FNBP4Q8N3X1 1017 aaPredicted RBP7.63□□□□□ -1.19
USP53-204ENST00000507906 EYA1Q99502 592 aa7.63□□□□□ -1.19
USP53-204ENST00000507906 RBM27Q9P2N5 1060 aaKnown RBP7.63□□□□□ -1.19
USP53-204ENST00000507906 LIMD1Q9UGP4 676 aa7.63□□□□□ -1.19
USP53-204ENST00000507906 SNRKQ9NRH2 765 aa7.62□□□□□ -1.19
USP53-204ENST00000507906 TSKSQ9UJT2 592 aa7.62□□□□□ -1.19
USP53-204ENST00000507906 RCCD1A6NED2 376 aa7.61□□□□□ -1.19
USP53-204ENST00000507906 HRCP23327 699 aa7.61□□□□□ -1.19
USP53-204ENST00000507906 SPIRE2Q8WWL2 714 aa7.61□□□□□ -1.19
USP53-204ENST00000507906 CLK2P49760 499 aaKnown RBP7.6□□□□□ -1.19
USP53-204ENST00000507906 CCDC82Q8N4S0 544 aa7.6□□□□□ -1.19
USP53-204ENST00000507906 ZNF777Q9ULD5 760 aaPredicted RBP7.6□□□□□ -1.19
USP53-204ENST00000507906 RFC5P40937 340 aa7.59□□□□□ -1.19
USP53-204ENST00000507906 TRIM26Q12899 539 aaPredicted RBP7.59□□□□□ -1.19
USP53-204ENST00000507906 RBM46Q8TBY0 533 aaKnown RBP7.59□□□□□ -1.19
USP53-204ENST00000507906 ATP1B4Q9UN42 357 aaPredicted RBP7.59□□□□□ -1.19
USP53-204ENST00000507906 CD46P15529 392 aa7.58□□□□□ -1.2
USP53-204ENST00000507906 PSEN2P49810 448 aa7.58□□□□□ -1.2
USP53-204ENST00000507906 DMRTA1Q5VZB9 504 aa7.57□□□□□ -1.2
USP53-204ENST00000507906 NUDT18Q6ZVK8 323 aa7.57□□□□□ -1.2
USP53-204ENST00000507906 RIC3Q7Z5B4 369 aa7.57□□□□□ -1.2
USP53-204ENST00000507906 PROSER2Q86WR7 435 aaPredicted RBP7.57□□□□□ -1.2
USP53-204ENST00000507906 BCL2L12Q9HB09 334 aa7.57□□□□□ -1.2
USP53-204ENST00000507906 COG6Q9Y2V7 657 aa7.57□□□□□ -1.2
USP53-204ENST00000507906 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.56□□□□□ -1.2
USP53-204ENST00000507906 NDUFV2P19404 249 aa7.56□□□□□ -1.2
USP53-204ENST00000507906 PCDHB15Q9Y5E8 787 aa7.56□□□□□ -1.2
USP53-204ENST00000507906 MOXD2PA6NHM9 499 aa7.55□□□□□ -1.2
USP53-204ENST00000507906 SMAPO00193 183 aa7.55□□□□□ -1.2
USP53-204ENST00000507906 SPTLC1O15269 473 aa7.55□□□□□ -1.2
USP53-204ENST00000507906 PBX2P40425 430 aa7.55□□□□□ -1.2
USP53-204ENST00000507906 QPCTQ16769 361 aa7.55□□□□□ -1.2
USP53-204ENST00000507906 PPP2R2DQ66LE6 453 aa7.55□□□□□ -1.2
USP53-204ENST00000507906 SPDYE5A6NIY4 337 aa7.54□□□□□ -1.2
USP53-204ENST00000507906 PROX2Q3B8N5 592 aa7.54□□□□□ -1.2
USP53-204ENST00000507906 ADGRD1Q6QNK2 874 aa7.54□□□□□ -1.2
USP53-204ENST00000507906 MTMR14Q8NCE2 650 aa7.54□□□□□ -1.2
USP53-204ENST00000507906 TATDN2Q93075 761 aa7.54□□□□□ -1.2
USP53-204ENST00000507906 PODXL2Q9NZ53 605 aa7.54□□□□□ -1.2
USP53-204ENST00000507906 DDX11L8A8MPP1 907 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 PPP1R3GB7ZBB8 358 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 ARHGAP33O14559 1287 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 CSPP1Q1MSJ5 1256 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 RTL5Q5HYW3 569 aaPredicted RBP7.53□□□□□ -1.2
USP53-204ENST00000507906 PPP4R3BQ5MIZ7 849 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 RSBN1LQ6PCB5 846 aaPredicted RBP7.53□□□□□ -1.2
USP53-204ENST00000507906 BANK1Q8NDB2 785 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 KCNK17Q96T54 332 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 TMEM134Q9H6X4 195 aa7.53□□□□□ -1.2
USP53-204ENST00000507906 TRIM6-TRIM34B2RNG4 842 aa7.52□□□□□ -1.21
USP53-204ENST00000507906 PNMA3Q9UL41 463 aa7.52□□□□□ -1.21
USP53-204ENST00000507906 CABLES1Q8TDN4 633 aa7.51□□□□□ -1.21
USP53-204ENST00000507906 LILRB3O75022 631 aa7.5□□□□□ -1.21
USP53-204ENST00000507906 PTPREP23469 700 aa7.5□□□□□ -1.21
USP53-204ENST00000507906 DNAJB2P25686 324 aa7.5□□□□□ -1.21
USP53-204ENST00000507906 TUSC1Q2TAM9 212 aa7.5□□□□□ -1.21
USP53-204ENST00000507906 TMEM259Q4ZIN3 620 aa7.5□□□□□ -1.21
USP53-204ENST00000507906 GDPD2Q9HCC8 539 aa7.5□□□□□ -1.21
USP53-204ENST00000507906 RAD21O60216 631 aa7.49□□□□□ -1.21
USP53-204ENST00000507906 DIXDC1Q155Q3 683 aa7.49□□□□□ -1.21
USP53-204ENST00000507906 HLA-CQ95604 372 aa7.49□□□□□ -1.21
USP53-204ENST00000507906 NUTM1Q86Y26 1132 aa7.48□□□□□ -1.21
USP53-204ENST00000507906 KCTD12Q96CX2 325 aaKnown RBP7.48□□□□□ -1.21
USP53-204ENST00000507906 PSDA5PKW4 1024 aaPredicted RBP7.47□□□□□ -1.21
USP53-204ENST00000507906 NBPF26B4DH59 902 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 SLC10A3P09131 477 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 PACS2Q86VP3 889 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 SULF1Q8IWU6 871 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 NECTIN2Q92692 538 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 KIAA1468Q9P260 1216 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 PCDHGC3Q9UN70 934 aa7.47□□□□□ -1.21
USP53-204ENST00000507906 POM121CA8CG34 1229 aa7.46□□□□□ -1.22
USP53-204ENST00000507906 AP1G2O75843 785 aa7.46□□□□□ -1.22
USP53-204ENST00000507906 GUCA2AQ02747 115 aa7.46□□□□□ -1.22
USP53-204ENST00000507906 PLA2G2EQ9NZK7 142 aa7.46□□□□□ -1.22
USP53-204ENST00000507906 TBC1D2BQ9UPU7 963 aa7.46□□□□□ -1.22
USP53-204ENST00000507906 ZNF330Q9Y3S2 320 aaPredicted RBP7.46□□□□□ -1.22
USP53-204ENST00000507906 KDM4AO75164 1064 aa7.45□□□□□ -1.22
USP53-204ENST00000507906 GJA5P36382 358 aa7.45□□□□□ -1.22
USP53-204ENST00000507906 GCGRP47871 477 aa7.45□□□□□ -1.22
USP53-204ENST00000507906 RDH13Q8NBN7 331 aa7.45□□□□□ -1.22
USP53-204ENST00000507906 ZBED2Q9BTP6 218 aa7.45□□□□□ -1.22
USP53-204ENST00000507906 HRO43593 1189 aa7.44□□□□□ -1.22
USP53-204ENST00000507906 GJD4Q96KN9 370 aaPredicted RBP7.44□□□□□ -1.22
USP53-204ENST00000507906 STAC3Q96MF2 364 aa7.44□□□□□ -1.22
USP53-204ENST00000507906 HOXA2O43364 376 aa7.43□□□□□ -1.22
USP53-204ENST00000507906 GPR37L1O60883 481 aa7.43□□□□□ -1.22
USP53-204ENST00000507906 USP17L8P0C7I0 530 aa7.43□□□□□ -1.22
USP53-204ENST00000507906 SWT1Q5T5J6 900 aaKnown RBP7.43□□□□□ -1.22
USP53-204ENST00000507906 HCSTQ9UBK5 93 aa7.43□□□□□ -1.22
USP53-204ENST00000507906 SERPINA10Q9UK55 444 aa7.43□□□□□ -1.22
USP53-204ENST00000507906 ABL2P42684 1182 aa7.42□□□□□ -1.22
USP53-204ENST00000507906 PTPN5P54829 565 aa7.42□□□□□ -1.22
USP53-204ENST00000507906 IRF5Q13568 498 aa7.42□□□□□ -1.22
USP53-204ENST00000507906 KCNH8Q96L42 1107 aa7.42□□□□□ -1.22
USP53-204ENST00000507906 HMX1Q9NP08 348 aaPredicted RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms