RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 FAM50AQ14320 339 aaKnown RBP12.3□□□□□ -0.44
SCN1A-207ENST00000507401 MROH1Q8NDA8 1641 aa12.29□□□□□ -0.44
SCN1A-207ENST00000507401 ARHGAP31Q2M1Z3 1444 aa12.29□□□□□ -0.44
SCN1A-207ENST00000507401 ANKLE2Q86XL3 938 aa12.29□□□□□ -0.44
SCN1A-207ENST00000507401 KANK1Q14678 1352 aa12.29□□□□□ -0.44
SCN1A-207ENST00000507401 ADGRL2O95490 1459 aa12.28□□□□□ -0.44
SCN1A-207ENST00000507401 SPATA31D1Q6ZQQ2 1576 aa12.28□□□□□ -0.44
SCN1A-207ENST00000507401 CD44P16070 742 aaKnown RBP12.28□□□□□ -0.44
SCN1A-207ENST00000507401 PRDM15P57071 1507 aaPredicted RBP12.27□□□□□ -0.44
SCN1A-207ENST00000507401 LTBP4Q8N2S1 1624 aa12.27□□□□□ -0.44
SCN1A-207ENST00000507401 DEPDC5O75140 1603 aa12.26□□□□□ -0.45
SCN1A-207ENST00000507401 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.26□□□□□ -0.45
SCN1A-207ENST00000507401 ERVK-7P63135 1459 aa12.26□□□□□ -0.45
SCN1A-207ENST00000507401 IQSEC2Q5JU85 1478 aa12.26□□□□□ -0.45
SCN1A-207ENST00000507401 UGGT1Q9NYU2 1555 aa12.26□□□□□ -0.45
SCN1A-207ENST00000507401 CEP152O94986 1710 aa12.24□□□□□ -0.45
SCN1A-207ENST00000507401 CFAP65Q6ZU64 1925 aaKnown RBP12.24□□□□□ -0.45
SCN1A-207ENST00000507401 LMTK2Q8IWU2 1503 aa12.24□□□□□ -0.45
SCN1A-207ENST00000507401 VWDEQ8N2E2 1590 aa12.23□□□□□ -0.45
SCN1A-207ENST00000507401 MED14O60244 1454 aa12.23□□□□□ -0.45
SCN1A-207ENST00000507401 ANKRD50Q9ULJ7 1429 aa12.23□□□□□ -0.45
SCN1A-207ENST00000507401 ROCK1Q13464 1354 aa12.23□□□□□ -0.45
SCN1A-207ENST00000507401 MYT1Q01538 1121 aa12.23□□□□□ -0.45
SCN1A-207ENST00000507401 ZNF335Q9H4Z2 1342 aaPredicted RBP12.22□□□□□ -0.45
SCN1A-207ENST00000507401 POLR1AO95602 1720 aaPredicted RBP12.22□□□□□ -0.45
SCN1A-207ENST00000507401 GABBR2O75899 941 aa12.2□□□□□ -0.46
SCN1A-207ENST00000507401 HRCP23327 699 aa12.2□□□□□ -0.46
SCN1A-207ENST00000507401 SLC52A1Q9NWF4 448 aa12.2□□□□□ -0.46
SCN1A-207ENST00000507401 NEURL4Q96JN8 1562 aa12.2□□□□□ -0.46
SCN1A-207ENST00000507401 IDI1Q13907 227 aa12.19□□□□□ -0.46
SCN1A-207ENST00000507401 NPHP4O75161 1426 aaPredicted RBP12.19□□□□□ -0.46
SCN1A-207ENST00000507401 UBR1Q8IWV7 1749 aa12.18□□□□□ -0.46
SCN1A-207ENST00000507401 PPARGC1BQ86YN6 1023 aaKnown RBP12.18□□□□□ -0.46
SCN1A-207ENST00000507401 EID1Q9Y6B2 187 aa12.18□□□□□ -0.46
SCN1A-207ENST00000507401 RPRD2Q5VT52 1461 aaKnown RBP12.18□□□□□ -0.46
SCN1A-207ENST00000507401 KDM5AP29375 1690 aaKnown RBP12.17□□□□□ -0.46
SCN1A-207ENST00000507401 ARHGAP23Q9P227 1491 aa12.17□□□□□ -0.46
SCN1A-207ENST00000507401 TXNDC2Q86VQ3 553 aa12.17□□□□□ -0.46
SCN1A-207ENST00000507401 NOS1P29475 1434 aa12.17□□□□□ -0.46
SCN1A-207ENST00000507401 SLIT1O75093 1534 aa12.16□□□□□ -0.46
SCN1A-207ENST00000507401 CPS1P31327 1500 aa12.16□□□□□ -0.46
SCN1A-207ENST00000507401 EFCAB6Q5THR3 1501 aa12.16□□□□□ -0.46
SCN1A-207ENST00000507401 LTKP29376 864 aa12.16□□□□□ -0.46
SCN1A-207ENST00000507401 MIER1Q8N108 512 aa12.15□□□□□ -0.46
SCN1A-207ENST00000507401 TMEM2Q9UHN6 1383 aa12.15□□□□□ -0.46
SCN1A-207ENST00000507401 IQGAP1P46940 1657 aa12.14□□□□□ -0.47
SCN1A-207ENST00000507401 UBAP1LF5GYI3 381 aa12.14□□□□□ -0.47
SCN1A-207ENST00000507401 ITGAEP38570 1179 aa12.14□□□□□ -0.47
SCN1A-207ENST00000507401 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
SCN1A-207ENST00000507401 ZRANB1Q9UGI0 708 aa12.14□□□□□ -0.47
SCN1A-207ENST00000507401 PIK3C2BO00750 1634 aa12.14□□□□□ -0.47
SCN1A-207ENST00000507401 SCAF11Q99590 1463 aaKnown RBP12.14□□□□□ -0.47
SCN1A-207ENST00000507401 UNC13BO14795 1591 aa12.13□□□□□ -0.47
SCN1A-207ENST00000507401 TET3O43151 1660 aa12.13□□□□□ -0.47
SCN1A-207ENST00000507401 RRBP1Q9P2E9 1410 aaKnown RBP12.13□□□□□ -0.47
SCN1A-207ENST00000507401 HDGFP51858 240 aaKnown RBP12.13□□□□□ -0.47
SCN1A-207ENST00000507401 TOM1O60784 492 aa12.12□□□□□ -0.47
SCN1A-207ENST00000507401 NUP155O75694 1391 aa12.12□□□□□ -0.47
SCN1A-207ENST00000507401 SYNMO15061 1565 aa12.12□□□□□ -0.47
SCN1A-207ENST00000507401 GCC2Q8IWJ2 1684 aa12.11□□□□□ -0.47
SCN1A-207ENST00000507401 IQGAP3Q86VI3 1631 aa12.09□□□□□ -0.47
SCN1A-207ENST00000507401 FBXO3Q9UK99 471 aa12.08□□□□□ -0.48
SCN1A-207ENST00000507401 ADGRB3O60242 1522 aa12.07□□□□□ -0.48
SCN1A-207ENST00000507401 E9PCH4 1651 aa12.06□□□□□ -0.48
SCN1A-207ENST00000507401 LRRC7Q96NW7 1537 aa12.06□□□□□ -0.48
SCN1A-207ENST00000507401 KCNA6P17658 529 aa12.06□□□□□ -0.48
SCN1A-207ENST00000507401 PLCD3Q8N3E9 789 aa12.06□□□□□ -0.48
SCN1A-207ENST00000507401 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.06□□□□□ -0.48
SCN1A-207ENST00000507401 NAIPQ13075 1403 aa12.05□□□□□ -0.48
SCN1A-207ENST00000507401 CLCN6P51797 869 aa12.05□□□□□ -0.48
SCN1A-207ENST00000507401 STRCP1A6NGW2 1772 aa12.05□□□□□ -0.48
SCN1A-207ENST00000507401 TMEM131LA2VDJ0 1609 aa12.04□□□□□ -0.48
SCN1A-207ENST00000507401 ZFYVE9O95405 1425 aa12.04□□□□□ -0.48
SCN1A-207ENST00000507401 SLC26A8Q96RN1 970 aa12.04□□□□□ -0.48
SCN1A-207ENST00000507401 PLEKHG5O94827 1062 aa12.03□□□□□ -0.48
SCN1A-207ENST00000507401 PHF12Q96QT6 1004 aa12.03□□□□□ -0.48
SCN1A-207ENST00000507401 TBX22Q9Y458 520 aa12.03□□□□□ -0.48
SCN1A-207ENST00000507401 PLEKHG1Q9ULL1 1385 aa12.03□□□□□ -0.48
SCN1A-207ENST00000507401 RIMS2Q9UQ26 1411 aa12.03□□□□□ -0.48
SCN1A-207ENST00000507401 PPP1R15AO75807 674 aaPredicted RBP12.02□□□□□ -0.49
SCN1A-207ENST00000507401 PAK3O75914 559 aaPredicted RBP12.02□□□□□ -0.49
SCN1A-207ENST00000507401 CHGAP10645 457 aaKnown RBP12.02□□□□□ -0.49
SCN1A-207ENST00000507401 PIP4K2BP78356 416 aa12.02□□□□□ -0.49
SCN1A-207ENST00000507401 RASEFQ8IZ41 740 aa12.02□□□□□ -0.49
SCN1A-207ENST00000507401 BCANQ96GW7 911 aa12.02□□□□□ -0.49
SCN1A-207ENST00000507401 HFM1A2PYH4 1435 aa12.02□□□□□ -0.49
SCN1A-207ENST00000507401 POTEIP0CG38 1075 aa12.01□□□□□ -0.49
SCN1A-207ENST00000507401 MYO5BQ9ULV0 1848 aa12□□□□□ -0.49
SCN1A-207ENST00000507401 NUBP1P53384 320 aa12□□□□□ -0.49
SCN1A-207ENST00000507401 PROSER2Q86WR7 435 aaPredicted RBP12□□□□□ -0.49
SCN1A-207ENST00000507401 CCDC61Q9Y6R9 512 aa12□□□□□ -0.49
SCN1A-207ENST00000507401 ACIN1Q9UKV3 1341 aaKnown RBP12□□□□□ -0.49
SCN1A-207ENST00000507401 HSPA1LP34931 641 aa11.99□□□□□ -0.49
SCN1A-207ENST00000507401 VASPP50552 380 aaPredicted RBP11.99□□□□□ -0.49
SCN1A-207ENST00000507401 ALKQ9UM73 1620 aa11.98□□□□□ -0.49
SCN1A-207ENST00000507401 PIK3R4Q99570 1358 aa11.98□□□□□ -0.49
SCN1A-207ENST00000507401 GALR2O43603 387 aaPredicted RBP11.98□□□□□ -0.49
SCN1A-207ENST00000507401 TRIM52Q96A61 297 aa11.98□□□□□ -0.49
SCN1A-207ENST00000507401 TMEM94Q12767 1356 aa11.97□□□□□ -0.49
SCN1A-207ENST00000507401 DISP3Q9P2K9 1392 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms