RNA–Protein interactions for RNA: ENST00000506515.1

HERC4-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 4

Gene HERC4, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-213ENST00000506515 SULF1Q8IWU6 871 aa11.98□□□□□ -0.49
HERC4-213ENST00000506515 POLR3EQ9NVU0 708 aa11.98□□□□□ -0.49
HERC4-213ENST00000506515 SKIV2LQ15477 1246 aaKnown RBP11.97□□□□□ -0.49
HERC4-213ENST00000506515 HS3ST6Q96QI5 342 aa11.97□□□□□ -0.49
HERC4-213ENST00000506515 CD46P15529 392 aa11.96□□□□□ -0.49
HERC4-213ENST00000506515 SLC4A5Q9BY07 1137 aa11.96□□□□□ -0.49
HERC4-213ENST00000506515 TBC1D2Q9BYX2 928 aa11.96□□□□□ -0.49
HERC4-213ENST00000506515 POTEB3A0JP26 581 aa11.95□□□□□ -0.5
HERC4-213ENST00000506515 MYSM1Q5VVJ2 828 aa11.95□□□□□ -0.5
HERC4-213ENST00000506515 POTEBQ6S5H4 581 aa11.95□□□□□ -0.5
HERC4-213ENST00000506515 VPS9D1Q9Y2B5 631 aa11.95□□□□□ -0.5
HERC4-213ENST00000506515 POTEGQ6S5H5 508 aa11.94□□□□□ -0.5
HERC4-213ENST00000506515 RDH13Q8NBN7 331 aa11.94□□□□□ -0.5
HERC4-213ENST00000506515 PROCA1Q8NCQ7 364 aaPredicted RBP11.94□□□□□ -0.5
HERC4-213ENST00000506515 DIXDC1Q155Q3 683 aa11.92□□□□□ -0.5
HERC4-213ENST00000506515 SWT1Q5T5J6 900 aaKnown RBP11.92□□□□□ -0.5
HERC4-213ENST00000506515 SPIRE2Q8WWL2 714 aa11.92□□□□□ -0.5
HERC4-213ENST00000506515 NUTM1Q86Y26 1132 aa11.91□□□□□ -0.5
HERC4-213ENST00000506515 CLK2P49760 499 aaKnown RBP11.9□□□□□ -0.5
HERC4-213ENST00000506515 HDGFP51858 240 aaKnown RBP11.9□□□□□ -0.5
HERC4-213ENST00000506515 FAM98CQ17RN3 349 aaKnown RBP11.89□□□□□ -0.51
HERC4-213ENST00000506515 LCE2DQ5TA82 110 aaPredicted RBP11.89□□□□□ -0.51
HERC4-213ENST00000506515 NBPF3Q9H094 633 aa11.88□□□□□ -0.51
HERC4-213ENST00000506515 RSPH4AQ5TD94 716 aa11.87□□□□□ -0.51
HERC4-213ENST00000506515 RIC3Q7Z5B4 369 aa11.86□□□□□ -0.51
HERC4-213ENST00000506515 LIMD1Q9UGP4 676 aa11.86□□□□□ -0.51
HERC4-213ENST00000506515 SLC10A3P09131 477 aa11.85□□□□□ -0.51
HERC4-213ENST00000506515 LSM11P83369 360 aaKnown RBP eCLIP11.85□□□□□ -0.51
HERC4-213ENST00000506515 SAMD7Q7Z3H4 446 aa11.85□□□□□ -0.51
HERC4-213ENST00000506515 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.85□□□□□ -0.51
HERC4-213ENST00000506515 MOXD2PA6NHM9 499 aa11.84□□□□□ -0.51
HERC4-213ENST00000506515 BHMG1C9JSJ3 638 aaPredicted RBP11.84□□□□□ -0.51
HERC4-213ENST00000506515 TK2O00142 265 aa11.84□□□□□ -0.51
HERC4-213ENST00000506515 RNF40O75150 1001 aa11.84□□□□□ -0.51
HERC4-213ENST00000506515 SLC4A3P48751 1232 aa11.84□□□□□ -0.51
HERC4-213ENST00000506515 LAPTM4BQ86VI4 370 aa11.84□□□□□ -0.51
HERC4-213ENST00000506515 KDM4AO75164 1064 aa11.83□□□□□ -0.52
HERC4-213ENST00000506515 NDUFV2P19404 249 aa11.83□□□□□ -0.52
HERC4-213ENST00000506515 GCGRP47871 477 aa11.83□□□□□ -0.52
HERC4-213ENST00000506515 CSPP1Q1MSJ5 1256 aa11.83□□□□□ -0.52
HERC4-213ENST00000506515 ADGRD1Q6QNK2 874 aa11.83□□□□□ -0.52
HERC4-213ENST00000506515 MRPL50Q8N5N7 158 aaKnown RBP11.83□□□□□ -0.52
HERC4-213ENST00000506515 FLIIQ13045 1269 aa11.82□□□□□ -0.52
HERC4-213ENST00000506515 SLF2Q8IX21 1173 aa11.82□□□□□ -0.52
HERC4-213ENST00000506515 ZFRQ96KR1 1074 aaKnown RBP11.82□□□□□ -0.52
HERC4-213ENST00000506515 SPTLC1O15269 473 aa11.81□□□□□ -0.52
HERC4-213ENST00000506515 RSBN1LQ6PCB5 846 aaPredicted RBP11.81□□□□□ -0.52
HERC4-213ENST00000506515 ANKRD13DQ6ZTN6 518 aa11.8□□□□□ -0.52
HERC4-213ENST00000506515 ZMYND15Q9H091 742 aa11.79□□□□□ -0.52
HERC4-213ENST00000506515 SUPT5HO00267 1087 aaKnown RBP11.78□□□□□ -0.52
HERC4-213ENST00000506515 FBXO31Q5XUX0 539 aaPredicted RBP11.78□□□□□ -0.52
HERC4-213ENST00000506515 STAC3Q96MF2 364 aa11.78□□□□□ -0.52
HERC4-213ENST00000506515 RFC5P40937 340 aa11.77□□□□□ -0.53
HERC4-213ENST00000506515 PCDHB15Q9Y5E8 787 aa11.77□□□□□ -0.53
HERC4-213ENST00000506515 HOXA2O43364 376 aa11.76□□□□□ -0.53
HERC4-213ENST00000506515 CFHP08603 1231 aa11.76□□□□□ -0.53
HERC4-213ENST00000506515 USP46P62068 366 aa11.76□□□□□ -0.53
HERC4-213ENST00000506515 HRO43593 1189 aa11.75□□□□□ -0.53
HERC4-213ENST00000506515 QPCTQ16769 361 aa11.75□□□□□ -0.53
HERC4-213ENST00000506515 TUSC1Q2TAM9 212 aa11.75□□□□□ -0.53
HERC4-213ENST00000506515 HLA-CQ95604 372 aa11.75□□□□□ -0.53
HERC4-213ENST00000506515 LRCH3Q96II8 777 aa11.75□□□□□ -0.53
HERC4-213ENST00000506515 GOLGA8CPA6NN73 597 aa11.74□□□□□ -0.53
HERC4-213ENST00000506515 GJA5P36382 358 aa11.74□□□□□ -0.53
HERC4-213ENST00000506515 GUCA2AQ02747 115 aa11.74□□□□□ -0.53
HERC4-213ENST00000506515 NUTM2BA6NNL0 878 aaPredicted RBP11.73□□□□□ -0.53
HERC4-213ENST00000506515 NUTM2EB1AL46 878 aaPredicted RBP11.73□□□□□ -0.53
HERC4-213ENST00000506515 FDX1P10109 184 aa11.73□□□□□ -0.53
HERC4-213ENST00000506515 FUT2Q10981 343 aa11.73□□□□□ -0.53
HERC4-213ENST00000506515 MCM6Q14566 821 aa11.73□□□□□ -0.53
HERC4-213ENST00000506515 NUTM2DQ5VT03 806 aaPredicted RBP11.73□□□□□ -0.53
HERC4-213ENST00000506515 PPP2R2DQ66LE6 453 aa11.73□□□□□ -0.53
HERC4-213ENST00000506515 NUTM2AQ8IVF1 878 aaPredicted RBP11.73□□□□□ -0.53
HERC4-213ENST00000506515 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.73□□□□□ -0.53
HERC4-213ENST00000506515 PCDH10Q9P2E7 1040 aa11.73□□□□□ -0.53
HERC4-213ENST00000506515 CABLES1Q8TDN4 633 aa11.72□□□□□ -0.53
HERC4-213ENST00000506515 LILRB3O75022 631 aa11.71□□□□□ -0.53
HERC4-213ENST00000506515 UBTFP17480 764 aaKnown RBP11.71□□□□□ -0.53
HERC4-213ENST00000506515 KMT5BQ4FZB7 885 aa11.7□□□□□ -0.54
HERC4-213ENST00000506515 GRIPAP1Q4V328 841 aa11.7□□□□□ -0.54
HERC4-213ENST00000506515 RTL5Q5HYW3 569 aaPredicted RBP11.7□□□□□ -0.54
HERC4-213ENST00000506515 ANKK1Q8NFD2 765 aa11.7□□□□□ -0.54
HERC4-213ENST00000506515 PCDHGC3Q9UN70 934 aa11.7□□□□□ -0.54
HERC4-213ENST00000506515 TMEM259Q4ZIN3 620 aa11.69□□□□□ -0.54
HERC4-213ENST00000506515 ZBTB3Q9H5J0 574 aa11.69□□□□□ -0.54
HERC4-213ENST00000506515 HRCP23327 699 aa11.68□□□□□ -0.54
HERC4-213ENST00000506515 PRPF38BQ5VTL8 546 aaKnown RBP11.68□□□□□ -0.54
HERC4-213ENST00000506515 CLUAP1Q96AJ1 413 aa11.68□□□□□ -0.54
HERC4-213ENST00000506515 SNRKQ9NRH2 765 aa11.68□□□□□ -0.54
HERC4-213ENST00000506515 ATP6V1AP38606 617 aa11.67□□□□□ -0.54
HERC4-213ENST00000506515 BCAMP50895 628 aa11.67□□□□□ -0.54
HERC4-213ENST00000506515 BANK1Q8NDB2 785 aa11.67□□□□□ -0.54
HERC4-213ENST00000506515 NECTIN2Q92692 538 aa11.67□□□□□ -0.54
HERC4-213ENST00000506515 AP1G2O75843 785 aa11.66□□□□□ -0.54
HERC4-213ENST00000506515 PPP4CP60510 307 aa11.66□□□□□ -0.54
HERC4-213ENST00000506515 WNT2BQ93097 391 aa11.66□□□□□ -0.54
HERC4-213ENST00000506515 SOWAHBA6NEL2 793 aa11.65□□□□□ -0.54
HERC4-213ENST00000506515 SPDYE5A6NIY4 337 aa11.65□□□□□ -0.54
HERC4-213ENST00000506515 PUS10Q3MIT2 529 aaKnown RBP11.65□□□□□ -0.54
HERC4-213ENST00000506515 HPS5Q9UPZ3 1129 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms