RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 ANKLE1Q8NAG6 615 aa9.83□□□□□ -0.84
RFC1-208ENST00000504849 PPEF1O14829 653 aaPredicted RBP9.82□□□□□ -0.84
RFC1-208ENST00000504849 CRIPAKQ8N1N5 446 aa9.82□□□□□ -0.84
RFC1-208ENST00000504849 TLL1O43897 1013 aa9.81□□□□□ -0.84
RFC1-208ENST00000504849 SWT1Q5T5J6 900 aaKnown RBP9.81□□□□□ -0.84
RFC1-208ENST00000504849 CERKQ8TCT0 537 aa9.8□□□□□ -0.84
RFC1-208ENST00000504849 INSM1Q01101 510 aaPredicted RBP9.79□□□□□ -0.84
RFC1-208ENST00000504849 BLOC1S3Q6QNY0 202 aa9.79□□□□□ -0.84
RFC1-208ENST00000504849 GMPR2Q9P2T1 348 aaKnown RBP9.79□□□□□ -0.84
RFC1-208ENST00000504849 HDGFP51858 240 aaKnown RBP9.77□□□□□ -0.85
RFC1-208ENST00000504849 PDIA6Q15084 440 aa9.77□□□□□ -0.85
RFC1-208ENST00000504849 PLA2G2CQ5R387 149 aa9.77□□□□□ -0.85
RFC1-208ENST00000504849 NECTIN2Q92692 538 aa9.77□□□□□ -0.85
RFC1-208ENST00000504849 PKD2L1Q9P0L9 805 aa9.77□□□□□ -0.85
RFC1-208ENST00000504849 S1PR4O95977 384 aa9.76□□□□□ -0.85
RFC1-208ENST00000504849 SLF2Q8IX21 1173 aa9.76□□□□□ -0.85
RFC1-208ENST00000504849 CDHR5Q9HBB8 845 aa9.76□□□□□ -0.85
RFC1-208ENST00000504849 PCDHB3Q9Y5E6 796 aa9.76□□□□□ -0.85
RFC1-208ENST00000504849 TTC13Q8NBP0 860 aa9.75□□□□□ -0.85
RFC1-208ENST00000504849 RBM27Q9P2N5 1060 aaKnown RBP9.75□□□□□ -0.85
RFC1-208ENST00000504849 AVPP01185 164 aa9.74□□□□□ -0.85
RFC1-208ENST00000504849 C11orf95C9JLR9 678 aaPredicted RBP9.73□□□□□ -0.85
RFC1-208ENST00000504849 PRR14Q9BWN1 585 aa9.68□□□□□ -0.86
RFC1-208ENST00000504849 TOR4AQ9NXH8 423 aa9.68□□□□□ -0.86
RFC1-208ENST00000504849 LMOD2Q6P5Q4 547 aa9.67□□□□□ -0.86
RFC1-208ENST00000504849 AXIN1O15169 862 aa9.66□□□□□ -0.86
RFC1-208ENST00000504849 SMCPP49901 116 aaPredicted RBP9.66□□□□□ -0.86
RFC1-208ENST00000504849 FOXC1Q12948 553 aa9.66□□□□□ -0.86
RFC1-208ENST00000504849 PADI6Q6TGC4 694 aa9.66□□□□□ -0.86
RFC1-208ENST00000504849 EYA1Q99502 592 aa9.66□□□□□ -0.86
RFC1-208ENST00000504849 SPDYE16A6NNV3 312 aaPredicted RBP9.65□□□□□ -0.86
RFC1-208ENST00000504849 TERTO14746 1132 aaKnown RBP9.64□□□□□ -0.87
RFC1-208ENST00000504849 ADH1BP00325 375 aa9.64□□□□□ -0.87
RFC1-208ENST00000504849 OSBPP22059 807 aa9.64□□□□□ -0.87
RFC1-208ENST00000504849 LORP23490 312 aaPredicted RBP9.64□□□□□ -0.87
RFC1-208ENST00000504849 NPDC1Q9NQX5 325 aaPredicted RBP9.64□□□□□ -0.87
RFC1-208ENST00000504849 CTC1Q2NKJ3 1217 aa9.63□□□□□ -0.87
RFC1-208ENST00000504849 SNRPBP14678 240 aaKnown RBP9.62□□□□□ -0.87
RFC1-208ENST00000504849 GRXCR2A6NFK2 248 aa9.61□□□□□ -0.87
RFC1-208ENST00000504849 ACTN4O43707 911 aaKnown RBP9.6□□□□□ -0.87
RFC1-208ENST00000504849 SUZ12Q15022 739 aaKnown RBP9.6□□□□□ -0.87
RFC1-208ENST00000504849 SLC6A16Q9GZN6 736 aa9.59□□□□□ -0.87
RFC1-208ENST00000504849 SLC4A3P48751 1232 aa9.57□□□□□ -0.88
RFC1-208ENST00000504849 ATP13A2Q9NQ11 1180 aa9.56□□□□□ -0.88
RFC1-208ENST00000504849 RPIAP49247 311 aa9.54□□□□□ -0.88
RFC1-208ENST00000504849 CYP4X1Q8N118 509 aa9.54□□□□□ -0.88
RFC1-208ENST00000504849 TRIM47Q96LD4 638 aa9.54□□□□□ -0.88
RFC1-208ENST00000504849 CFHP08603 1231 aa9.52□□□□□ -0.89
RFC1-208ENST00000504849 KMT5BQ4FZB7 885 aa9.51□□□□□ -0.89
RFC1-208ENST00000504849 ARIH1Q9Y4X5 557 aaPredicted RBP9.51□□□□□ -0.89
RFC1-208ENST00000504849 FAM181BA6NEQ2 426 aa9.5□□□□□ -0.89
RFC1-208ENST00000504849 NR1I2O75469 434 aa9.5□□□□□ -0.89
RFC1-208ENST00000504849 TMEM134Q9H6X4 195 aa9.5□□□□□ -0.89
RFC1-208ENST00000504849 SLC10A3P09131 477 aa9.49□□□□□ -0.89
RFC1-208ENST00000504849 DNAJB2P25686 324 aa9.49□□□□□ -0.89
RFC1-208ENST00000504849 SMPD1P17405 629 aa9.48□□□□□ -0.89
RFC1-208ENST00000504849 GMPRP36959 345 aa9.48□□□□□ -0.89
RFC1-208ENST00000504849 SCUBE3Q8IX30 993 aa9.48□□□□□ -0.89
RFC1-208ENST00000504849 ZSCAN1Q8NBB4 408 aa9.48□□□□□ -0.89
RFC1-208ENST00000504849 SPSB2Q99619 263 aa9.45□□□□□ -0.9
RFC1-208ENST00000504849 CD2BP2O95400 341 aaKnown RBP9.44□□□□□ -0.9
RFC1-208ENST00000504849 SENP2Q9HC62 589 aa9.44□□□□□ -0.9
RFC1-208ENST00000504849 FCF1Q9Y324 198 aaKnown RBP9.44□□□□□ -0.9
RFC1-208ENST00000504849 TTC24A2A3L6 582 aaPredicted RBP9.42□□□□□ -0.9
RFC1-208ENST00000504849 PUS10Q3MIT2 529 aaKnown RBP9.41□□□□□ -0.9
RFC1-208ENST00000504849 RCCD1A6NED2 376 aa9.4□□□□□ -0.9
RFC1-208ENST00000504849 ADGRG1Q9Y653 693 aa9.4□□□□□ -0.9
RFC1-208ENST00000504849 E2F4Q16254 413 aa9.39□□□□□ -0.91
RFC1-208ENST00000504849 KIFC2Q96AC6 838 aa9.39□□□□□ -0.91
RFC1-208ENST00000504849 J3QL48 77 aa9.38□□□□□ -0.91
RFC1-208ENST00000504849 WNT7AO00755 349 aa9.38□□□□□ -0.91
RFC1-208ENST00000504849 SNIP1Q8TAD8 396 aaKnown RBP9.38□□□□□ -0.91
RFC1-208ENST00000504849 SLC16A10Q8TF71 515 aa9.38□□□□□ -0.91
RFC1-208ENST00000504849 THAP11Q96EK4 314 aa9.38□□□□□ -0.91
RFC1-208ENST00000504849 NXF1Q9UBU9 619 aaKnown RBP9.38□□□□□ -0.91
RFC1-208ENST00000504849 GSK3AP49840 483 aa9.37□□□□□ -0.91
RFC1-208ENST00000504849 FAM160A2Q8N612 972 aaPredicted RBP9.37□□□□□ -0.91
RFC1-208ENST00000504849 RBM46Q8TBY0 533 aaKnown RBP9.37□□□□□ -0.91
RFC1-208ENST00000504849 HPS1Q92902 700 aa9.37□□□□□ -0.91
RFC1-208ENST00000504849 ERBB4Q15303 1308 aa9.35□□□□□ -0.91
RFC1-208ENST00000504849 FAM161AQ3B820 660 aa9.35□□□□□ -0.91
RFC1-208ENST00000504849 IRF7Q92985 503 aa9.34□□□□□ -0.91
RFC1-208ENST00000504849 PRDM9Q9NQV7 894 aa9.34□□□□□ -0.91
RFC1-208ENST00000504849 PTGDRQ13258 359 aa9.33□□□□□ -0.92
RFC1-208ENST00000504849 NPAS3Q8IXF0 933 aa9.33□□□□□ -0.92
RFC1-208ENST00000504849 MRGPRX2Q96LB1 330 aa9.33□□□□□ -0.92
RFC1-208ENST00000504849 H3BM21 787 aa9.32□□□□□ -0.92
RFC1-208ENST00000504849 VEGFBP49765 207 aa9.32□□□□□ -0.92
RFC1-208ENST00000504849 KCTD17Q8N5Z5 321 aa9.31□□□□□ -0.92
RFC1-208ENST00000504849 MORN1Q5T089 497 aa9.3□□□□□ -0.92
RFC1-208ENST00000504849 SLC24A1O60721 1099 aa9.28□□□□□ -0.92
RFC1-208ENST00000504849 KCNMA1Q12791 1236 aa9.27□□□□□ -0.93
RFC1-208ENST00000504849 TRIM32Q13049 653 aa9.27□□□□□ -0.93
RFC1-208ENST00000504849 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.26□□□□□ -0.93
RFC1-208ENST00000504849 TRIM46Q7Z4K8 759 aa9.25□□□□□ -0.93
RFC1-208ENST00000504849 ZBTB24O43167 697 aaPredicted RBP9.24□□□□□ -0.93
RFC1-208ENST00000504849 FMNL1O95466 1100 aaPredicted RBP9.23□□□□□ -0.93
RFC1-208ENST00000504849 SLC27A5Q9Y2P5 690 aa9.23□□□□□ -0.93
RFC1-208ENST00000504849 BMP1P13497 986 aa9.22□□□□□ -0.93
RFC1-208ENST00000504849 MLLT3P42568 568 aaPredicted RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms