RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SAMD9Q5K651 1589 aa13.57□□□□□ -0.24
LIMCH1-205ENST00000503057 MINK1Q8N4C8 1332 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-205ENST00000503057 CFAP70Q5T0N1 1121 aa13.57□□□□□ -0.24
LIMCH1-205ENST00000503057 MCCP23508 829 aa13.57□□□□□ -0.24
LIMCH1-205ENST00000503057 LMOD2Q6P5Q4 547 aa13.57□□□□□ -0.24
LIMCH1-205ENST00000503057 OS9Q13438 667 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-205ENST00000503057 AAMPQ13685 434 aa13.56□□□□□ -0.24
LIMCH1-205ENST00000503057 PTMSP20962 102 aa13.56□□□□□ -0.24
LIMCH1-205ENST00000503057 DIAPH1O60610 1272 aaKnown RBP13.55□□□□□ -0.24
LIMCH1-205ENST00000503057 COG6Q9Y2V7 657 aa13.55□□□□□ -0.24
LIMCH1-205ENST00000503057 COG3Q96JB2 828 aa13.55□□□□□ -0.24
LIMCH1-205ENST00000503057 MFAP1P55081 439 aaKnown RBP13.54□□□□□ -0.24
LIMCH1-205ENST00000503057 SPRYD3Q8NCJ5 442 aa13.54□□□□□ -0.24
LIMCH1-205ENST00000503057 CHMP4AQ9BY43 222 aa13.54□□□□□ -0.24
LIMCH1-205ENST00000503057 CDCA7LQ96GN5 454 aa13.53□□□□□ -0.24
LIMCH1-205ENST00000503057 BCL2L13Q9BXK5 485 aa13.53□□□□□ -0.24
LIMCH1-205ENST00000503057 STK31Q9BXU1 1019 aa13.53□□□□□ -0.24
LIMCH1-205ENST00000503057 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMCH1-205ENST00000503057 SLKQ9H2G2 1235 aaPredicted RBP13.52□□□□□ -0.24
LIMCH1-205ENST00000503057 DNMT1P26358 1616 aaKnown RBP13.52□□□□□ -0.24
LIMCH1-205ENST00000503057 GBP4Q96PP9 640 aa13.52□□□□□ -0.24
LIMCH1-205ENST00000503057 HMMRO75330 724 aa13.52□□□□□ -0.25
LIMCH1-205ENST00000503057 GLIPR1L2Q4G1C9 344 aa13.52□□□□□ -0.25
LIMCH1-205ENST00000503057 DDX19BQ9UMR2 479 aa13.52□□□□□ -0.25
LIMCH1-205ENST00000503057 RALGAPBQ86X10 1494 aa13.51□□□□□ -0.25
LIMCH1-205ENST00000503057 RPGRIP1LQ68CZ1 1315 aa13.51□□□□□ -0.25
LIMCH1-205ENST00000503057 PAK3O75914 559 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-205ENST00000503057 TMEM132EQ6IEE7 984 aa13.51□□□□□ -0.25
LIMCH1-205ENST00000503057 ATP10BO94823 1461 aa13.51□□□□□ -0.25
LIMCH1-205ENST00000503057 CYB5RLQ6IPT4 315 aa13.5□□□□□ -0.25
LIMCH1-205ENST00000503057 FAM135AQ9P2D6 1515 aa13.5□□□□□ -0.25
LIMCH1-205ENST00000503057 DZIP1LQ8IYY4 767 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-205ENST00000503057 NGDNQ8NEJ9 315 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-205ENST00000503057 RIPK4P57078 832 aa13.49□□□□□ -0.25
LIMCH1-205ENST00000503057 EIF4G3O43432 1585 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-205ENST00000503057 SHANK2Q9UPX8 1470 aa13.49□□□□□ -0.25
LIMCH1-205ENST00000503057 CABP2Q9NPB3 220 aa13.49□□□□□ -0.25
LIMCH1-205ENST00000503057 APBB1O00213 710 aa13.48□□□□□ -0.25
LIMCH1-205ENST00000503057 TRHP20396 242 aaPredicted RBP13.48□□□□□ -0.25
LIMCH1-205ENST00000503057 AMPHP49418 695 aa13.48□□□□□ -0.25
LIMCH1-205ENST00000503057 NINLQ9Y2I6 1382 aa13.48□□□□□ -0.25
LIMCH1-205ENST00000503057 KIF16BQ96L93 1317 aa13.47□□□□□ -0.25
LIMCH1-205ENST00000503057 MTHFSP49914 203 aa13.47□□□□□ -0.25
LIMCH1-205ENST00000503057 PTMAP06454 111 aaKnown RBP13.47□□□□□ -0.25
LIMCH1-205ENST00000503057 FAM69CQ0P6D2 419 aa13.47□□□□□ -0.25
LIMCH1-205ENST00000503057 GCC2Q8IWJ2 1684 aa13.47□□□□□ -0.25
LIMCH1-205ENST00000503057 KCNJ4P48050 445 aa13.46□□□□□ -0.25
LIMCH1-205ENST00000503057 RTN4Q9NQC3 1192 aaKnown RBP13.46□□□□□ -0.25
LIMCH1-205ENST00000503057 DUOX2Q9NRD8 1548 aa13.46□□□□□ -0.25
LIMCH1-205ENST00000503057 ADGRL1O94910 1474 aa13.46□□□□□ -0.25
LIMCH1-205ENST00000503057 TCP11L2Q8N4U5 519 aa13.46□□□□□ -0.26
LIMCH1-205ENST00000503057 GGNBP2Q9H3C7 697 aa13.45□□□□□ -0.26
LIMCH1-205ENST00000503057 DISP1Q96F81 1524 aa13.45□□□□□ -0.26
LIMCH1-205ENST00000503057 PDE3AQ14432 1141 aa13.44□□□□□ -0.26
LIMCH1-205ENST00000503057 SLC52A1Q9NWF4 448 aa13.44□□□□□ -0.26
LIMCH1-205ENST00000503057 SCAF11Q99590 1463 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 HDAC5Q9UQL6 1122 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 GNAI1P63096 354 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 ARHGEF12Q9NZN5 1544 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 PANK1Q8TE04 598 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 API5Q9BZZ5 524 aaKnown RBP13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 SYCP2Q9BX26 1530 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 SLC4A10Q6U841 1118 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 KIAA1211Q6ZU35 1233 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 ANKRD45Q5TZF3 282 aa13.43□□□□□ -0.26
LIMCH1-205ENST00000503057 A0A0G2JS52 829 aa13.42□□□□□ -0.26
LIMCH1-205ENST00000503057 NUP160Q12769 1436 aa13.42□□□□□ -0.26
LIMCH1-205ENST00000503057 EIF2AK4Q9P2K8 1649 aaKnown RBP13.42□□□□□ -0.26
LIMCH1-205ENST00000503057 SLC12A5Q9H2X9 1139 aa13.42□□□□□ -0.26
LIMCH1-205ENST00000503057 NUTM2FA1L443 756 aa13.42□□□□□ -0.26
LIMCH1-205ENST00000503057 ADGRL2O95490 1459 aa13.41□□□□□ -0.26
LIMCH1-205ENST00000503057 ELL2O00472 640 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-205ENST00000503057 WDR63Q8IWG1 891 aa13.41□□□□□ -0.26
LIMCH1-205ENST00000503057 TARBP1Q13395 1621 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-205ENST00000503057 SLC4A3P48751 1232 aa13.41□□□□□ -0.26
LIMCH1-205ENST00000503057 PLCH2O75038 1416 aa13.41□□□□□ -0.26
LIMCH1-205ENST00000503057 FANCAO15360 1455 aa13.4□□□□□ -0.26
LIMCH1-205ENST00000503057 GOLGA6L3A6NEY3 463 aa13.4□□□□□ -0.26
LIMCH1-205ENST00000503057 ZRSR1Q15695 479 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-205ENST00000503057 PRAM1Q96QH2 718 aa13.4□□□□□ -0.26
LIMCH1-205ENST00000503057 PZPP20742 1482 aa13.4□□□□□ -0.26
LIMCH1-205ENST00000503057 PRAG1Q86YV5 1406 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 NSD3Q9BZ95 1437 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 DDX11L8A8MPP1 907 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 CT47B1P0C2W7 299 aaPredicted RBP13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 ADGBQ8N7X0 1667 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 FGD1P98174 961 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 DISP3Q9P2K9 1392 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 GPATCH3Q96I76 525 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 ATAD2Q6PL18 1390 aa13.39□□□□□ -0.27
LIMCH1-205ENST00000503057 NAP1L5Q96NT1 182 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 CD109Q6YHK3 1445 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 ST18O60284 1047 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 SLFN5Q08AF3 891 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 GSE1Q14687 1217 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 TRIM6-TRIM34B2RNG4 842 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 TPRNQ4KMQ1 711 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 GZF1Q9H116 711 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 MAGI3Q5TCQ9 1506 aa13.38□□□□□ -0.27
LIMCH1-205ENST00000503057 BACH2Q9BYV9 841 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms