RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ARHGEF40Q8TER5 1519 aa21.66■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 PER1O15534 1290 aaPredicted RBP21.65■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 CFAP65Q6ZU64 1925 aaKnown RBP21.65■■□□□ 1.06
MSH5-SAPCD1-208ENST00000498473 TESK2Q96S53 571 aa21.63■■□□□ 1.05
MSH5-SAPCD1-208ENST00000498473 EIF2AK4Q9P2K8 1649 aaKnown RBP21.62■■□□□ 1.05
MSH5-SAPCD1-208ENST00000498473 ERBINQ96RT1 1412 aa21.62■■□□□ 1.05
MSH5-SAPCD1-208ENST00000498473 DISP3Q9P2K9 1392 aa21.61■■□□□ 1.05
MSH5-SAPCD1-208ENST00000498473 NLRP13Q86W25 1043 aa21.6■■□□□ 1.05
MSH5-SAPCD1-208ENST00000498473 MROH1Q8NDA8 1641 aa21.57■■□□□ 1.04
MSH5-SAPCD1-208ENST00000498473 RNF17Q9BXT8 1623 aaKnown RBP21.57■■□□□ 1.04
MSH5-SAPCD1-208ENST00000498473 CEP152O94986 1710 aa21.56■■□□□ 1.04
MSH5-SAPCD1-208ENST00000498473 CCDC136Q96JN2 1154 aa21.56■■□□□ 1.04
MSH5-SAPCD1-208ENST00000498473 WASHC2CQ9Y4E1 1318 aa21.54■■□□□ 1.04
MSH5-SAPCD1-208ENST00000498473 PANK3Q9H999 370 aa21.51■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 RRP1P56182 461 aaKnown RBP21.5■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 DEPDC5O75140 1603 aa21.5■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 CC2D1BQ5T0F9 858 aaKnown RBP21.49■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 MADDQ8WXG6 1647 aa21.49■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 CEBPAP49715 358 aaPredicted RBP21.48■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 TMF1P82094 1093 aa21.48■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 PDE3BQ13370 1112 aa21.48■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 INSRP06213 1382 aa21.48■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 SALL2Q9Y467 1007 aaPredicted RBP21.47■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 BLMP54132 1417 aaPredicted RBP21.47■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 RCAN3Q9UKA8 241 aa21.47■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 IQGAP1P46940 1657 aa21.46■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 CLTCQ00610 1675 aaKnown RBP21.46■■□□□ 1.03
MSH5-SAPCD1-208ENST00000498473 FBXO31Q5XUX0 539 aaPredicted RBP21.45■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 TRPM2O94759 1503 aa21.44■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 KANK1Q14678 1352 aa21.44■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 SPHKAPQ2M3C7 1700 aa21.44■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 CDCA7LQ96GN5 454 aa21.43■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 REREQ9P2R6 1566 aa21.43■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 EXOC6Q8TAG9 804 aa21.43■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 ABCC3O15438 1527 aa21.43■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 PTPRTO14522 1441 aa21.42■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 ESF1Q9H501 851 aaKnown RBP21.41■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 AGLP35573 1532 aa21.41■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 CLTCL1P53675 1640 aa21.41■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 VWDEQ8N2E2 1590 aa21.39■■□□□ 1.02
MSH5-SAPCD1-208ENST00000498473 UGGT1Q9NYU2 1555 aa21.39■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 SENP3Q9H4L4 574 aaPredicted RBP21.39■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 NPATQ14207 1427 aa21.38■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 CAMSAP1Q5T5Y3 1602 aa21.37■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 TET3O43151 1660 aa21.37■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 FER1L4A9Z1Z3 1794 aa21.36■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 SCAF11Q99590 1463 aaKnown RBP21.35■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 EFCAB6Q5THR3 1501 aa21.34■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 SYNMO15061 1565 aa21.34■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 RIMS1Q86UR5 1692 aaKnown RBP21.33■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 STAC3Q96MF2 364 aa21.33■■□□□ 1.01
MSH5-SAPCD1-208ENST00000498473 NOP58Q9Y2X3 529 aaKnown RBP21.33■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 ZMYM3Q14202 1370 aa21.32■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 AMER1Q5JTC6 1135 aaPredicted RBP21.32■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 ADAMTS8Q9UP79 889 aa21.32■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 MYOM1P52179 1685 aa21.32■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 PAK3O75914 559 aaPredicted RBP21.31■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 PPP2R1AP30153 589 aa21.31■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 CHGAP10645 457 aaKnown RBP21.31■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 KIAA1210Q9ULL0 1709 aa21.3■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 KNSTRNQ9Y448 316 aa21.29■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 NEURL4Q96JN8 1562 aa21.28■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 PLIN1O60240 522 aa21.28■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 ASXL1Q8IXJ9 1541 aa21.27■■□□□ 1
MSH5-SAPCD1-208ENST00000498473 KDM4FA0A1W2PPD8 638 aa21.27■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 CDCA8Q53HL2 280 aa21.27■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 IPO9Q96P70 1041 aaKnown RBP21.27■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 ZC3H13Q5T200 1668 aaKnown RBP21.26■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 LMTK2Q8IWU2 1503 aa21.26■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 TCERG1O14776 1098 aaKnown RBP21.26■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 NUTM2DQ5VT03 806 aaPredicted RBP21.26■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 C3P01024 1663 aa21.26■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 PLEKHH1Q9ULM0 1364 aa21.25■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 ANP32AP39687 249 aaKnown RBP21.25■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 ADAMTSL3P82987 1691 aa21.24■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 PREX1Q8TCU6 1659 aa21.24■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 NPC1L1Q9UHC9 1359 aa21.23■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 KDM5AP29375 1690 aaKnown RBP21.23■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 PIK3C2GO75747 1445 aa21.23■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 CRBNQ96SW2 442 aa21.23■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 ZNF521Q96K83 1311 aa21.22■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 IDI1Q13907 227 aa21.21■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 EIF3AQ14152 1382 aaKnown RBP21.21■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 MYOM2P54296 1465 aa21.21■□□□□ 0.99
MSH5-SAPCD1-208ENST00000498473 IFT172Q9UG01 1749 aa21.2■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 WDR43Q15061 677 aaKnown RBP eCLIP21.2■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 ERVK-7P63135 1459 aa21.2■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 DUSP27Q5VZP5 1158 aa21.19■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 KIF1BO60333 1816 aa21.19■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 MYO5BQ9ULV0 1848 aa21.19■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 PDE4AP27815 886 aa21.19■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 MS4A1P11836 297 aa21.18■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 CFAP70Q5T0N1 1121 aa21.18■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 ADGRF5Q8IZF2 1346 aa21.17■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 C20orf194Q5TEA3 1177 aa21.17■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 PPP6R1Q9UPN7 881 aa21.17■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 MROH2AA6NES4 1674 aa21.17■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 BACH2Q9BYV9 841 aa21.17■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 NOS1P29475 1434 aa21.16■□□□□ 0.98
MSH5-SAPCD1-208ENST00000498473 ARHGAP31Q2M1Z3 1444 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms