RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 PLEKHG5O94827 1062 aa11.82□□□□□ -0.52
HPS4-217ENST00000496385 ADGRL2O95490 1459 aa11.82□□□□□ -0.52
HPS4-217ENST00000496385 CEBPAP49715 358 aaPredicted RBP11.81□□□□□ -0.52
HPS4-217ENST00000496385 PDE3BQ13370 1112 aa11.81□□□□□ -0.52
HPS4-217ENST00000496385 DUOX2Q9NRD8 1548 aa11.81□□□□□ -0.52
HPS4-217ENST00000496385 ANKRD50Q9ULJ7 1429 aa11.81□□□□□ -0.52
HPS4-217ENST00000496385 FRAT2O75474 233 aaPredicted RBP11.81□□□□□ -0.52
HPS4-217ENST00000496385 EXOC6Q8TAG9 804 aa11.81□□□□□ -0.52
HPS4-217ENST00000496385 BCORL1Q5H9F3 1711 aa11.8□□□□□ -0.52
HPS4-217ENST00000496385 NAP1L5Q96NT1 182 aaPredicted RBP11.8□□□□□ -0.52
HPS4-217ENST00000496385 MADDQ8WXG6 1647 aa11.8□□□□□ -0.52
HPS4-217ENST00000496385 ESF1Q9H501 851 aaKnown RBP11.79□□□□□ -0.52
HPS4-217ENST00000496385 ROCK1Q13464 1354 aa11.79□□□□□ -0.52
HPS4-217ENST00000496385 REREQ9P2R6 1566 aa11.79□□□□□ -0.52
HPS4-217ENST00000496385 NAIPQ13075 1403 aa11.79□□□□□ -0.52
HPS4-217ENST00000496385 AGLP35573 1532 aa11.78□□□□□ -0.52
HPS4-217ENST00000496385 PDCL3Q9H2J4 239 aa11.78□□□□□ -0.52
HPS4-217ENST00000496385 RCAN3Q9UKA8 241 aa11.78□□□□□ -0.52
HPS4-217ENST00000496385 RIMS1Q86UR5 1692 aaKnown RBP11.78□□□□□ -0.52
HPS4-217ENST00000496385 SPATA31E1Q6ZUB1 1445 aa11.77□□□□□ -0.52
HPS4-217ENST00000496385 LRPPRCP42704 1394 aaKnown RBP11.77□□□□□ -0.53
HPS4-217ENST00000496385 CALD1Q05682 793 aaKnown RBP11.77□□□□□ -0.53
HPS4-217ENST00000496385 PNISRQ8TF01 805 aaKnown RBP11.77□□□□□ -0.53
HPS4-217ENST00000496385 KTN1Q86UP2 1357 aaKnown RBP11.77□□□□□ -0.53
HPS4-217ENST00000496385 FER1L4A9Z1Z3 1794 aa11.77□□□□□ -0.53
HPS4-217ENST00000496385 ERBINQ96RT1 1412 aa11.77□□□□□ -0.53
HPS4-217ENST00000496385 TPM2P07951 284 aa11.76□□□□□ -0.53
HPS4-217ENST00000496385 FAM161AQ3B820 660 aa11.76□□□□□ -0.53
HPS4-217ENST00000496385 ADAMTSL3P82987 1691 aa11.76□□□□□ -0.53
HPS4-217ENST00000496385 KIF7Q2M1P5 1343 aa11.76□□□□□ -0.53
HPS4-217ENST00000496385 CLTCQ00610 1675 aaKnown RBP11.75□□□□□ -0.53
HPS4-217ENST00000496385 MROH1Q8NDA8 1641 aa11.75□□□□□ -0.53
HPS4-217ENST00000496385 CFAP65Q6ZU64 1925 aaKnown RBP11.73□□□□□ -0.53
HPS4-217ENST00000496385 GCC2Q8IWJ2 1684 aa11.73□□□□□ -0.53
HPS4-217ENST00000496385 NUP155O75694 1391 aa11.73□□□□□ -0.53
HPS4-217ENST00000496385 CEP152O94986 1710 aa11.73□□□□□ -0.53
HPS4-217ENST00000496385 EIF2AK4Q9P2K8 1649 aaKnown RBP11.73□□□□□ -0.53
HPS4-217ENST00000496385 FBXO31Q5XUX0 539 aaPredicted RBP11.73□□□□□ -0.53
HPS4-217ENST00000496385 PTPRMP28827 1452 aa11.72□□□□□ -0.53
HPS4-217ENST00000496385 BRD4O60885 1362 aaPredicted RBP11.72□□□□□ -0.53
HPS4-217ENST00000496385 ROCK2O75116 1388 aaKnown RBP11.72□□□□□ -0.53
HPS4-217ENST00000496385 INSRP06213 1382 aa11.72□□□□□ -0.53
HPS4-217ENST00000496385 RNF17Q9BXT8 1623 aaKnown RBP11.72□□□□□ -0.53
HPS4-217ENST00000496385 ZMYM3Q14202 1370 aa11.71□□□□□ -0.53
HPS4-217ENST00000496385 SLC4A3P48751 1232 aa11.71□□□□□ -0.53
HPS4-217ENST00000496385 CENPQQ7L2Z9 268 aaPredicted RBP11.71□□□□□ -0.53
HPS4-217ENST00000496385 ISY1Q9ULR0 285 aaKnown RBP11.71□□□□□ -0.53
HPS4-217ENST00000496385 FSD2A1L4K1 749 aa11.71□□□□□ -0.54
HPS4-217ENST00000496385 FOXD1Q16676 465 aa11.71□□□□□ -0.54
HPS4-217ENST00000496385 KANK1Q14678 1352 aa11.7□□□□□ -0.54
HPS4-217ENST00000496385 TMC1Q8TDI8 760 aa11.7□□□□□ -0.54
HPS4-217ENST00000496385 ABCC3O15438 1527 aa11.7□□□□□ -0.54
HPS4-217ENST00000496385 GOLGA6L3A6NEY3 463 aa11.7□□□□□ -0.54
HPS4-217ENST00000496385 PRDM15P57071 1507 aaPredicted RBP11.7□□□□□ -0.54
HPS4-217ENST00000496385 KDM5DQ9BY66 1539 aa11.7□□□□□ -0.54
HPS4-217ENST00000496385 DEPDC5O75140 1603 aa11.69□□□□□ -0.54
HPS4-217ENST00000496385 KDM2BQ8NHM5 1336 aa11.69□□□□□ -0.54
HPS4-217ENST00000496385 POGKQ9P215 609 aa11.69□□□□□ -0.54
HPS4-217ENST00000496385 C8orf34Q49A92 452 aa11.69□□□□□ -0.54
HPS4-217ENST00000496385 C3P01024 1663 aa11.69□□□□□ -0.54
HPS4-217ENST00000496385 AAMPQ13685 434 aa11.68□□□□□ -0.54
HPS4-217ENST00000496385 BECN1Q14457 450 aa11.68□□□□□ -0.54
HPS4-217ENST00000496385 RBM10P98175 930 aaKnown RBP11.68□□□□□ -0.54
HPS4-217ENST00000496385 MAP7D2Q96T17 732 aa11.68□□□□□ -0.54
HPS4-217ENST00000496385 UNC13BO14795 1591 aa11.68□□□□□ -0.54
HPS4-217ENST00000496385 XRCC6P12956 609 aaKnown RBP eCLIP11.67□□□□□ -0.546e-6■■■■■ 31.4
HPS4-217ENST00000496385 L3MBTL2Q969R5 705 aa11.67□□□□□ -0.54
HPS4-217ENST00000496385 SLC4A1APQ9BWU0 796 aaKnown RBP11.67□□□□□ -0.54
HPS4-217ENST00000496385 MRE11P49959 708 aa11.67□□□□□ -0.54
HPS4-217ENST00000496385 TERF1P54274 439 aa11.67□□□□□ -0.54
HPS4-217ENST00000496385 PRDM4Q9UKN5 801 aa11.67□□□□□ -0.54
HPS4-217ENST00000496385 FAM135AQ9P2D6 1515 aa11.66□□□□□ -0.54
HPS4-217ENST00000496385 CAMSAP1Q5T5Y3 1602 aa11.66□□□□□ -0.54
HPS4-217ENST00000496385 FGD1P98174 961 aa11.66□□□□□ -0.54
HPS4-217ENST00000496385 RPRD2Q5VT52 1461 aaKnown RBP11.66□□□□□ -0.54
HPS4-217ENST00000496385 VIRMAQ69YN4 1812 aaKnown RBP11.66□□□□□ -0.54
HPS4-217ENST00000496385 RALBP1Q15311 655 aa11.65□□□□□ -0.54
HPS4-217ENST00000496385 NPATQ14207 1427 aa11.65□□□□□ -0.54
HPS4-217ENST00000496385 PKD2Q13563 968 aa11.65□□□□□ -0.54
HPS4-217ENST00000496385 PPP6R1Q9UPN7 881 aa11.65□□□□□ -0.54
HPS4-217ENST00000496385 VWDEQ8N2E2 1590 aa11.65□□□□□ -0.55
HPS4-217ENST00000496385 MYBBP1AQ9BQG0 1328 aaKnown RBP11.64□□□□□ -0.55
HPS4-217ENST00000496385 ESPNB1AK53 854 aa11.64□□□□□ -0.55
HPS4-217ENST00000496385 PZPP20742 1482 aa11.64□□□□□ -0.55
HPS4-217ENST00000496385 HSPA2P54652 639 aa11.63□□□□□ -0.55
HPS4-217ENST00000496385 MPHOSPH9Q99550 1183 aa11.63□□□□□ -0.55
HPS4-217ENST00000496385 IQGAP3Q86VI3 1631 aa11.63□□□□□ -0.55
HPS4-217ENST00000496385 ZC3H13Q5T200 1668 aaKnown RBP11.63□□□□□ -0.55
HPS4-217ENST00000496385 SENP3Q9H4L4 574 aaPredicted RBP11.62□□□□□ -0.55
HPS4-217ENST00000496385 MROH2AA6NES4 1674 aa11.62□□□□□ -0.55
HPS4-217ENST00000496385 EFCAB6Q5THR3 1501 aa11.62□□□□□ -0.55
HPS4-217ENST00000496385 CRBNQ96SW2 442 aa11.62□□□□□ -0.55
HPS4-217ENST00000496385 E9PCH4 1651 aa11.62□□□□□ -0.55
HPS4-217ENST00000496385 TET3O43151 1660 aa11.61□□□□□ -0.55
HPS4-217ENST00000496385 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
HPS4-217ENST00000496385 UGGT1Q9NYU2 1555 aa11.61□□□□□ -0.55
HPS4-217ENST00000496385 NBPF8Q3BBV2 869 aa11.61□□□□□ -0.55
HPS4-217ENST00000496385 MTERF4Q7Z6M4 381 aaKnown RBP11.6□□□□□ -0.55
HPS4-217ENST00000496385 ANTXR1Q9H6X2 564 aa11.6□□□□□ -0.55
HPS4-217ENST00000496385 TNRQ92752 1358 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms