RNA–Protein interactions for RNA: ENST00000494672.1

CCDC66-222, Transcript of coiled-coil domain containing 66, human

TSL 4

Gene CCDC66, Length 577 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC66-222	ENST00000494672	PXYLP1	Q8TE99	480 aa		11.39	□□□□□ -0.59
CCDC66-222	ENST00000494672	TJAP1	Q5JTD0	557 aa		11.38	□□□□□ -0.59
CCDC66-222	ENST00000494672	PRR14	Q9BWN1	585 aa		11.38	□□□□□ -0.59
CCDC66-222	ENST00000494672	GPR37	O15354	613 aa		11.37	□□□□□ -0.59
CCDC66-222	ENST00000494672	FECH	P22830	423 aa		11.37	□□□□□ -0.59
CCDC66-222	ENST00000494672	IL21	Q9HBE4	155 aa		11.37	□□□□□ -0.59
CCDC66-222	ENST00000494672	MTR	Q99707	1265 aa		11.36	□□□□□ -0.59
CCDC66-222	ENST00000494672	METTL3	Q86U44	580 aa	Known RBP	11.35	□□□□□ -0.59
CCDC66-222	ENST00000494672	RSPH4A	Q5TD94	716 aa		11.33	□□□□□ -0.6
CCDC66-222	ENST00000494672	KMT5B	Q4FZB7	885 aa		11.31	□□□□□ -0.6
CCDC66-222	ENST00000494672	ZNF516	Q92618	1163 aa		11.3	□□□□□ -0.6
CCDC66-222	ENST00000494672	PCDHB3	Q9Y5E6	796 aa		11.3	□□□□□ -0.6
CCDC66-222	ENST00000494672	COPS2	P61201	443 aa		11.28	□□□□□ -0.6
CCDC66-222	ENST00000494672	CFH	P08603	1231 aa		11.27	□□□□□ -0.61
CCDC66-222	ENST00000494672	SLC10A3	P09131	477 aa		11.27	□□□□□ -0.61
CCDC66-222	ENST00000494672	DAXX	Q9UER7	740 aa	Predicted RBP	11.27	□□□□□ -0.61
CCDC66-222	ENST00000494672	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
CCDC66-222	ENST00000494672	ACTN4	O43707	911 aa	Known RBP	11.25	□□□□□ -0.61
CCDC66-222	ENST00000494672	ZPR1	O75312	459 aa		11.25	□□□□□ -0.61
CCDC66-222	ENST00000494672	MAP2K5	Q13163	448 aa		11.23	□□□□□ -0.61
CCDC66-222	ENST00000494672	BLOC1S3	Q6QNY0	202 aa		11.23	□□□□□ -0.61
CCDC66-222	ENST00000494672	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.23	□□□□□ -0.61
CCDC66-222	ENST00000494672	RDH13	Q8NBN7	331 aa		11.22	□□□□□ -0.61
CCDC66-222	ENST00000494672	NKX2-3	Q8TAU0	364 aa		11.22	□□□□□ -0.61
CCDC66-222	ENST00000494672	IRF6	O14896	467 aa		11.21	□□□□□ -0.61
CCDC66-222	ENST00000494672	PPP1R18	Q6NYC8	613 aa		11.21	□□□□□ -0.61
CCDC66-222	ENST00000494672	SULF1	Q8IWU6	871 aa		11.21	□□□□□ -0.61
CCDC66-222	ENST00000494672	NLRP7	Q8WX94	980 aa		11.21	□□□□□ -0.61
CCDC66-222	ENST00000494672	PHOX2B	Q99453	314 aa		11.21	□□□□□ -0.61
CCDC66-222	ENST00000494672	DDX11L8	A8MPP1	907 aa		11.2	□□□□□ -0.62
CCDC66-222	ENST00000494672	GGCX	P38435	758 aa		11.2	□□□□□ -0.62
CCDC66-222	ENST00000494672	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.2	□□□□□ -0.62
CCDC66-222	ENST00000494672	LMOD2	Q6P5Q4	547 aa		11.19	□□□□□ -0.62
CCDC66-222	ENST00000494672	NR1I2	O75469	434 aa		11.18	□□□□□ -0.62
CCDC66-222	ENST00000494672	TMUB1	Q9BVT8	246 aa		11.16	□□□□□ -0.62
CCDC66-222	ENST00000494672	IRX2	Q9BZI1	471 aa	Predicted RBP	11.16	□□□□□ -0.62
CCDC66-222	ENST00000494672	GCGR	P47871	477 aa		11.13	□□□□□ -0.63
CCDC66-222	ENST00000494672	SCUBE3	Q8IX30	993 aa		11.13	□□□□□ -0.63
CCDC66-222	ENST00000494672	KRI1	Q8N9T8	703 aa	Known RBP	11.13	□□□□□ -0.63
CCDC66-222	ENST00000494672	PUS10	Q3MIT2	529 aa	Known RBP	11.12	□□□□□ -0.63
CCDC66-222	ENST00000494672	CCDC102A	Q96A19	550 aa		11.12	□□□□□ -0.63
CCDC66-222	ENST00000494672	PRKD2	Q9BZL6	878 aa		11.12	□□□□□ -0.63
CCDC66-222	ENST00000494672	ATP6V1A	P38606	617 aa		11.11	□□□□□ -0.63
CCDC66-222	ENST00000494672	TLL1	O43897	1013 aa		11.1	□□□□□ -0.63
CCDC66-222	ENST00000494672	MDM2	Q00987	491 aa	Predicted RBP	11.1	□□□□□ -0.63
CCDC66-222	ENST00000494672	FUT2	Q10981	343 aa		11.1	□□□□□ -0.63
CCDC66-222	ENST00000494672		V9GY48	417 aa	Predicted RBP	11.1	□□□□□ -0.63
CCDC66-222	ENST00000494672	ADH1B	P00325	375 aa		11.09	□□□□□ -0.63
CCDC66-222	ENST00000494672	GRIPAP1	Q4V328	841 aa		11.09	□□□□□ -0.63
CCDC66-222	ENST00000494672	BARGIN	Q6ZT62	677 aa		11.08	□□□□□ -0.64
CCDC66-222	ENST00000494672	MORN1	Q5T089	497 aa		11.07	□□□□□ -0.64
CCDC66-222	ENST00000494672	ZC3H15	Q8WU90	426 aa	Known RBP	11.07	□□□□□ -0.64
CCDC66-222	ENST00000494672	RNF223	E7ERA6	249 aa		11.06	□□□□□ -0.64
CCDC66-222	ENST00000494672	ZMYND10	O75800	440 aa		11.06	□□□□□ -0.64
CCDC66-222	ENST00000494672	CD46	P15529	392 aa		11.06	□□□□□ -0.64
CCDC66-222	ENST00000494672	CLCN1	P35523	988 aa		11.06	□□□□□ -0.64
CCDC66-222	ENST00000494672	SPSB2	Q99619	263 aa		11.06	□□□□□ -0.64
CCDC66-222	ENST00000494672	SLC6A16	Q9GZN6	736 aa		11.06	□□□□□ -0.64
CCDC66-222	ENST00000494672	S1PR4	O95977	384 aa		11.05	□□□□□ -0.64
CCDC66-222	ENST00000494672	GPCPD1	Q9NPB8	672 aa		11.05	□□□□□ -0.64
CCDC66-222	ENST00000494672	ANKLE1	Q8NAG6	615 aa		11.04	□□□□□ -0.64
CCDC66-222	ENST00000494672	SLC27A5	Q9Y2P5	690 aa		11.03	□□□□□ -0.64
CCDC66-222	ENST00000494672	FMNL1	O95466	1100 aa	Predicted RBP	11.02	□□□□□ -0.65
CCDC66-222	ENST00000494672	LAPTM4A	Q15012	233 aa		11.02	□□□□□ -0.65
CCDC66-222	ENST00000494672	SALL2	Q9Y467	1007 aa	Predicted RBP	11.02	□□□□□ -0.65
CCDC66-222	ENST00000494672	KDM4A	O75164	1064 aa		11.01	□□□□□ -0.65
CCDC66-222	ENST00000494672	PPEF1	O14829	653 aa	Predicted RBP	11	□□□□□ -0.65
CCDC66-222	ENST00000494672	SLC19A1	P41440	591 aa		11	□□□□□ -0.65
CCDC66-222	ENST00000494672	FAM217B	Q9NTX9	383 aa	Predicted RBP	11	□□□□□ -0.65
CCDC66-222	ENST00000494672	USP46	P62068	366 aa		10.99	□□□□□ -0.65
CCDC66-222	ENST00000494672		Q3C1V9	767 aa		10.99	□□□□□ -0.65
CCDC66-222	ENST00000494672	THAP11	Q96EK4	314 aa		10.99	□□□□□ -0.65
CCDC66-222	ENST00000494672	GFRA3	O60609	400 aa		10.98	□□□□□ -0.65
CCDC66-222	ENST00000494672	BRICD5	Q6PL45	260 aa		10.98	□□□□□ -0.65
CCDC66-222	ENST00000494672	NUTM1	Q86Y26	1132 aa		10.96	□□□□□ -0.65
CCDC66-222	ENST00000494672	SSTR3	P32745	418 aa	Predicted RBP	10.95	□□□□□ -0.66
CCDC66-222	ENST00000494672	TTLL12	Q14166	644 aa	Predicted RBP	10.95	□□□□□ -0.66
CCDC66-222	ENST00000494672		Q6ZNB5	142 aa		10.95	□□□□□ -0.66
CCDC66-222	ENST00000494672	FAM160A2	Q8N612	972 aa	Predicted RBP	10.95	□□□□□ -0.66
CCDC66-222	ENST00000494672	REPIN1	Q9BWE0	567 aa	Known RBP	10.95	□□□□□ -0.66
CCDC66-222	ENST00000494672	AMHR2	Q16671	573 aa		10.94	□□□□□ -0.66
CCDC66-222	ENST00000494672	SPRYD7	Q5W111	196 aa		10.93	□□□□□ -0.66
CCDC66-222	ENST00000494672	LIAT1	Q6ZQX7	453 aa		10.93	□□□□□ -0.66
CCDC66-222	ENST00000494672	AK7	Q96M32	723 aa		10.93	□□□□□ -0.66
CCDC66-222	ENST00000494672	RNF19B	Q6ZMZ0	732 aa		10.92	□□□□□ -0.66
CCDC66-222	ENST00000494672	ZNF598	Q86UK7	904 aa	Known RBP	10.92	□□□□□ -0.66
CCDC66-222	ENST00000494672	EMID1	Q96A84	441 aa	Predicted RBP	10.92	□□□□□ -0.66
CCDC66-222	ENST00000494672	PDZRN3	Q9UPQ7	1066 aa		10.92	□□□□□ -0.66
CCDC66-222	ENST00000494672	NRG2	O14511	850 aa	Predicted RBP	10.91	□□□□□ -0.66
CCDC66-222	ENST00000494672	HOXA2	O43364	376 aa		10.91	□□□□□ -0.66
CCDC66-222	ENST00000494672	SLC24A1	O60721	1099 aa		10.91	□□□□□ -0.66
CCDC66-222	ENST00000494672	MSS51	Q4VC12	460 aa		10.91	□□□□□ -0.66
CCDC66-222	ENST00000494672	TRIM66	O15016	1216 aa		10.89	□□□□□ -0.67
CCDC66-222	ENST00000494672	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.89	□□□□□ -0.67
CCDC66-222	ENST00000494672	USB1	Q9BQ65	265 aa	Known RBP	10.89	□□□□□ -0.67
CCDC66-222	ENST00000494672	FCF1	Q9Y324	198 aa	Known RBP	10.89	□□□□□ -0.67
CCDC66-222	ENST00000494672	PLA2G2C	Q5R387	149 aa		10.88	□□□□□ -0.67
CCDC66-222	ENST00000494672	HLA-C	Q95604	372 aa		10.88	□□□□□ -0.67
CCDC66-222	ENST00000494672	ZNF697	Q5TEC3	545 aa		10.87	□□□□□ -0.67
CCDC66-222	ENST00000494672	CD2BP2	O95400	341 aa	Known RBP	10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 103 ms