RNA–Protein interactions for RNA: ENST00000494582.1

LINC00488-201, long intergenic non-protein coding RNA 488, humanhuman

TSL 1 (best) BASIC

Gene LINC00488, Length 2,520 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00488-201ENST00000494582 WDR43Q15061 677 aaKnown RBP eCLIP12.86□□□□□ -0.35
LINC00488-201ENST00000494582 ARID3AQ99856 593 aa12.86□□□□□ -0.35
LINC00488-201ENST00000494582 FAM13BQ9NYF5 915 aa12.86□□□□□ -0.35
LINC00488-201ENST00000494582 TRPM1Q7Z4N2 1603 aa12.85□□□□□ -0.35
LINC00488-201ENST00000494582 CGNL1Q0VF96 1302 aa12.85□□□□□ -0.35
LINC00488-201ENST00000494582 CLASP1Q7Z460 1538 aa12.85□□□□□ -0.35
LINC00488-201ENST00000494582 KDM5DQ9BY66 1539 aa12.85□□□□□ -0.35
LINC00488-201ENST00000494582 DDX11L8A8MPP1 907 aa12.85□□□□□ -0.35
LINC00488-201ENST00000494582 LAMC3Q9Y6N6 1575 aa12.84□□□□□ -0.35
LINC00488-201ENST00000494582 APAF1O14727 1248 aa12.84□□□□□ -0.35
LINC00488-201ENST00000494582 ISY1Q9ULR0 285 aaKnown RBP12.84□□□□□ -0.35
LINC00488-201ENST00000494582 NUP155O75694 1391 aa12.84□□□□□ -0.35
LINC00488-201ENST00000494582 FGD1P98174 961 aa12.84□□□□□ -0.35
LINC00488-201ENST00000494582 TNPO1Q92973 898 aaKnown RBP12.84□□□□□ -0.35
LINC00488-201ENST00000494582 C22orf23Q9BZE7 217 aa12.84□□□□□ -0.35
LINC00488-201ENST00000494582 PRAG1Q86YV5 1406 aa12.84□□□□□ -0.35
LINC00488-201ENST00000494582 MAGI2Q86UL8 1455 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 PDE3AQ14432 1141 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 ZSCAN30Q86W11 494 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 PPP1R9BQ96SB3 815 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 PRDM10Q9NQV6 1147 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 ADGBQ8N7X0 1667 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 RLBP1P12271 317 aa12.83□□□□□ -0.36
LINC00488-201ENST00000494582 MFAP1P55081 439 aaKnown RBP12.83□□□□□ -0.36
LINC00488-201ENST00000494582 ZHX1Q9UKY1 873 aaPredicted RBP12.83□□□□□ -0.36
LINC00488-201ENST00000494582 R3HCC1Q9Y3T6 440 aaKnown RBP12.83□□□□□ -0.36
LINC00488-201ENST00000494582 NCOA3Q9Y6Q9 1424 aa12.82□□□□□ -0.36
LINC00488-201ENST00000494582 ERBINQ96RT1 1412 aa12.81□□□□□ -0.36
LINC00488-201ENST00000494582 ANKRD50Q9ULJ7 1429 aa12.81□□□□□ -0.36
LINC00488-201ENST00000494582 ADGRL2O95490 1459 aa12.81□□□□□ -0.36
LINC00488-201ENST00000494582 CCDC173Q0VFZ6 552 aa12.8□□□□□ -0.36
LINC00488-201ENST00000494582 AEBP2Q6ZN18 517 aaPredicted RBP12.8□□□□□ -0.36
LINC00488-201ENST00000494582 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.8□□□□□ -0.36
LINC00488-201ENST00000494582 ZNF777Q9ULD5 760 aaPredicted RBP12.8□□□□□ -0.36
LINC00488-201ENST00000494582 AMER1Q5JTC6 1135 aaPredicted RBP12.79□□□□□ -0.36
LINC00488-201ENST00000494582 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.79□□□□□ -0.36
LINC00488-201ENST00000494582 CANXP27824 592 aaKnown RBP12.79□□□□□ -0.36
LINC00488-201ENST00000494582 NASPP49321 788 aaPredicted RBP12.79□□□□□ -0.36
LINC00488-201ENST00000494582 RGL3Q3MIN7 710 aa12.79□□□□□ -0.36
LINC00488-201ENST00000494582 SMAP1Q8IYB5 467 aaPredicted RBP12.79□□□□□ -0.36
LINC00488-201ENST00000494582 GPRASP1Q5JY77 1395 aa12.78□□□□□ -0.36
LINC00488-201ENST00000494582 E9PSI1 815 aa12.78□□□□□ -0.36
LINC00488-201ENST00000494582 CROCC2H7BZ55 1655 aa12.78□□□□□ -0.36
LINC00488-201ENST00000494582 WDR7Q9Y4E6 1490 aa12.78□□□□□ -0.36
LINC00488-201ENST00000494582 TERF1P54274 439 aa12.78□□□□□ -0.36
LINC00488-201ENST00000494582 XPCQ01831 940 aaPredicted RBP12.78□□□□□ -0.36
LINC00488-201ENST00000494582 PRDM15P57071 1507 aaPredicted RBP12.77□□□□□ -0.36
LINC00488-201ENST00000494582 ZMYM3Q14202 1370 aa12.77□□□□□ -0.36
LINC00488-201ENST00000494582 UQCRHLA0A096LP55 91 aa12.77□□□□□ -0.37
LINC00488-201ENST00000494582 UQCRHP07919 91 aa12.77□□□□□ -0.37
LINC00488-201ENST00000494582 CFDP1Q9UEE9 299 aaPredicted RBP12.77□□□□□ -0.37
LINC00488-201ENST00000494582 HSCBQ8IWL3 235 aa12.77□□□□□ -0.37
LINC00488-201ENST00000494582 PMFBP1Q8TBY8 1022 aa12.77□□□□□ -0.37
LINC00488-201ENST00000494582 ANKRD30AQ9BXX3 1397 aa12.76□□□□□ -0.37
LINC00488-201ENST00000494582 RAB3GAP1Q15042 981 aa12.76□□□□□ -0.37
LINC00488-201ENST00000494582 EIF4G3O43432 1585 aaKnown RBP12.76□□□□□ -0.37
LINC00488-201ENST00000494582 MSNP26038 577 aaKnown RBP12.76□□□□□ -0.37
LINC00488-201ENST00000494582 FOXD4L1Q9NU39 408 aa12.76□□□□□ -0.37
LINC00488-201ENST00000494582 MAP7D2Q96T17 732 aa12.75□□□□□ -0.37
LINC00488-201ENST00000494582 BCL2L13Q9BXK5 485 aa12.75□□□□□ -0.37
LINC00488-201ENST00000494582 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
LINC00488-201ENST00000494582 FAM135AQ9P2D6 1515 aa12.75□□□□□ -0.37
LINC00488-201ENST00000494582 NUP153P49790 1475 aaKnown RBP12.75□□□□□ -0.37
LINC00488-201ENST00000494582 CD2BP2O95400 341 aaKnown RBP12.75□□□□□ -0.37
LINC00488-201ENST00000494582 ABCC2Q92887 1545 aa12.74□□□□□ -0.37
LINC00488-201ENST00000494582 TMF1P82094 1093 aa12.74□□□□□ -0.37
LINC00488-201ENST00000494582 SMC5Q8IY18 1101 aa12.74□□□□□ -0.37
LINC00488-201ENST00000494582 KNSTRNQ9Y448 316 aa12.74□□□□□ -0.37
LINC00488-201ENST00000494582 A2MP01023 1474 aa12.74□□□□□ -0.37
LINC00488-201ENST00000494582 NINLQ9Y2I6 1382 aa12.74□□□□□ -0.37
LINC00488-201ENST00000494582 RARSP54136 660 aaKnown RBP12.73□□□□□ -0.37
LINC00488-201ENST00000494582 GPATCH8Q9UKJ3 1502 aaKnown RBP12.73□□□□□ -0.37
LINC00488-201ENST00000494582 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
LINC00488-201ENST00000494582 ABCC10Q5T3U5 1492 aa12.73□□□□□ -0.37
LINC00488-201ENST00000494582 PLXNC1O60486 1568 aa12.73□□□□□ -0.37
LINC00488-201ENST00000494582 PIK3C2GO75747 1445 aa12.72□□□□□ -0.37
LINC00488-201ENST00000494582 IQGAP2Q13576 1575 aa12.72□□□□□ -0.37
LINC00488-201ENST00000494582 ZNF500O60304 480 aaPredicted RBP12.72□□□□□ -0.37
LINC00488-201ENST00000494582 SSFA2P28290 1259 aa12.72□□□□□ -0.37
LINC00488-201ENST00000494582 GBP4Q96PP9 640 aa12.72□□□□□ -0.37
LINC00488-201ENST00000494582 ZSCAN20P17040 1043 aaPredicted RBP12.71□□□□□ -0.37
LINC00488-201ENST00000494582 SKOR2Q2VWA4 1001 aaPredicted RBP12.71□□□□□ -0.37
LINC00488-201ENST00000494582 WWC1Q8IX03 1113 aa12.71□□□□□ -0.37
LINC00488-201ENST00000494582 NOL7Q9UMY1 257 aaKnown RBP12.71□□□□□ -0.37
LINC00488-201ENST00000494582 PTPRGP23470 1445 aa12.71□□□□□ -0.37
LINC00488-201ENST00000494582 DMTNQ08495 405 aa12.71□□□□□ -0.37
LINC00488-201ENST00000494582 URB2Q14146 1524 aaKnown RBP12.71□□□□□ -0.38
LINC00488-201ENST00000494582 KIF2CQ99661 725 aa12.7□□□□□ -0.38
LINC00488-201ENST00000494582 RWDD1Q9H446 243 aaPredicted RBP12.7□□□□□ -0.38
LINC00488-201ENST00000494582 LAMC1P11047 1609 aa12.7□□□□□ -0.38
LINC00488-201ENST00000494582 ADCY10Q96PN6 1610 aa12.7□□□□□ -0.38
LINC00488-201ENST00000494582 SNX21Q969T3 373 aa12.7□□□□□ -0.38
LINC00488-201ENST00000494582 RBSNQ9H1K0 784 aa12.69□□□□□ -0.38
LINC00488-201ENST00000494582 CIZ1Q9ULV3 898 aaPredicted RBP12.69□□□□□ -0.38
LINC00488-201ENST00000494582 ITSN2Q9NZM3 1697 aa12.69□□□□□ -0.38
LINC00488-201ENST00000494582 CCDC144AA2RUR9 1427 aa12.69□□□□□ -0.38
LINC00488-201ENST00000494582 HSP90AB1P08238 724 aaKnown RBP12.69□□□□□ -0.38
LINC00488-201ENST00000494582 RBM25P49756 843 aaKnown RBP12.69□□□□□ -0.38
LINC00488-201ENST00000494582 PDLIM2Q96JY6 352 aa12.69□□□□□ -0.38
LINC00488-201ENST00000494582 PLA2R1Q13018 1463 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms