RNA–Protein interactions for RNA: ENST00000494248.1

PTPN12-212, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 3

Gene PTPN12, Length 470 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-212ENST00000494248 DPYSL4O14531 572 aa7.56□□□□□ -1.2
PTPN12-212ENST00000494248 APLP1P51693 650 aa7.55□□□□□ -1.2
PTPN12-212ENST00000494248 PACS2Q86VP3 889 aa7.55□□□□□ -1.2
PTPN12-212ENST00000494248 GMPRP36959 345 aa7.54□□□□□ -1.2
PTPN12-212ENST00000494248 CAMK2BQ13554 666 aa7.54□□□□□ -1.2
PTPN12-212ENST00000494248 KRTAP4-8A0A0G2JLE6 195 aa7.52□□□□□ -1.21
PTPN12-212ENST00000494248 PRIM1P49642 420 aaKnown RBP7.52□□□□□ -1.21
PTPN12-212ENST00000494248 EN1Q05925 392 aaPredicted RBP7.52□□□□□ -1.21
PTPN12-212ENST00000494248 ZNF697Q5TEC3 545 aa7.51□□□□□ -1.21
PTPN12-212ENST00000494248 CDCA7LQ96GN5 454 aa7.51□□□□□ -1.21
PTPN12-212ENST00000494248 KRTAP9-9Q9BYP9 154 aa7.51□□□□□ -1.21
PTPN12-212ENST00000494248 KRTAP9-4Q9BYQ2 154 aa7.51□□□□□ -1.21
PTPN12-212ENST00000494248 AXIN1O15169 862 aa7.5□□□□□ -1.21
PTPN12-212ENST00000494248 TMEM151AQ8N4L1 468 aa7.5□□□□□ -1.21
PTPN12-212ENST00000494248 AVPP01185 164 aa7.49□□□□□ -1.21
PTPN12-212ENST00000494248 SNRPBP14678 240 aaKnown RBP7.49□□□□□ -1.21
PTPN12-212ENST00000494248 TATDN2Q93075 761 aa7.49□□□□□ -1.21
PTPN12-212ENST00000494248 MAP3K7O43318 606 aa7.48□□□□□ -1.21
PTPN12-212ENST00000494248 PRSS12P56730 875 aa7.48□□□□□ -1.21
PTPN12-212ENST00000494248 COPS2P61201 443 aa7.48□□□□□ -1.21
PTPN12-212ENST00000494248 NBR1Q14596 966 aa7.48□□□□□ -1.21
PTPN12-212ENST00000494248 PNMA3Q9UL41 463 aa7.47□□□□□ -1.21
PTPN12-212ENST00000494248 SLC16A10Q8TF71 515 aa7.46□□□□□ -1.22
PTPN12-212ENST00000494248 GDF11O95390 407 aa7.45□□□□□ -1.22
PTPN12-212ENST00000494248 CTC1Q2NKJ3 1217 aa7.45□□□□□ -1.22
PTPN12-212ENST00000494248 RNF223E7ERA6 249 aa7.44□□□□□ -1.22
PTPN12-212ENST00000494248 RNF40O75150 1001 aa7.44□□□□□ -1.22
PTPN12-212ENST00000494248 KRTAP4-12Q9BQ66 201 aa7.44□□□□□ -1.22
PTPN12-212ENST00000494248 BTBD11A6QL63 1104 aa7.43□□□□□ -1.22
PTPN12-212ENST00000494248 SMCPP49901 116 aaPredicted RBP7.43□□□□□ -1.22
PTPN12-212ENST00000494248 NUDT18Q6ZVK8 323 aa7.43□□□□□ -1.22
PTPN12-212ENST00000494248 ZPR1O75312 459 aa7.42□□□□□ -1.22
PTPN12-212ENST00000494248 NBPF26B4DH59 902 aa7.41□□□□□ -1.22
PTPN12-212ENST00000494248 RASSF7Q02833 373 aa7.41□□□□□ -1.22
PTPN12-212ENST00000494248 LIAT1Q6ZQX7 453 aa7.41□□□□□ -1.22
PTPN12-212ENST00000494248 TRIM47Q96LD4 638 aa7.41□□□□□ -1.22
PTPN12-212ENST00000494248 CDHR5Q9HBB8 845 aa7.41□□□□□ -1.22
PTPN12-212ENST00000494248 PDIA6Q15084 440 aa7.4□□□□□ -1.22
PTPN12-212ENST00000494248 SWT1Q5T5J6 900 aaKnown RBP7.4□□□□□ -1.22
PTPN12-212ENST00000494248 IRF7Q92985 503 aa7.4□□□□□ -1.22
PTPN12-212ENST00000494248 PPEF1O14829 653 aaPredicted RBP7.39□□□□□ -1.23
PTPN12-212ENST00000494248 TLL1O43897 1013 aa7.37□□□□□ -1.23
PTPN12-212ENST00000494248 IGHA1P01876 353 aa7.36□□□□□ -1.23
PTPN12-212ENST00000494248 GPAT2Q6NUI2 795 aa7.36□□□□□ -1.23
PTPN12-212ENST00000494248 BLOC1S3Q6QNY0 202 aa7.36□□□□□ -1.23
PTPN12-212ENST00000494248 CERKQ8TCT0 537 aa7.36□□□□□ -1.23
PTPN12-212ENST00000494248 ATP13A2Q9NQ11 1180 aa7.36□□□□□ -1.23
PTPN12-212ENST00000494248 TTC13Q8NBP0 860 aa7.35□□□□□ -1.23
PTPN12-212ENST00000494248 SENP2Q9HC62 589 aa7.35□□□□□ -1.23
PTPN12-212ENST00000494248 PKD2L1Q9P0L9 805 aa7.35□□□□□ -1.23
PTPN12-212ENST00000494248 HDGFP51858 240 aaKnown RBP7.34□□□□□ -1.23
PTPN12-212ENST00000494248 LMOD2Q6P5Q4 547 aa7.34□□□□□ -1.23
PTPN12-212ENST00000494248 ANKLE1Q8NAG6 615 aa7.34□□□□□ -1.23
PTPN12-212ENST00000494248 NXF1Q9UBU9 619 aaKnown RBP7.34□□□□□ -1.23
PTPN12-212ENST00000494248 GRXCR2A6NFK2 248 aa7.33□□□□□ -1.24
PTPN12-212ENST00000494248 OSBPP22059 807 aa7.33□□□□□ -1.24
PTPN12-212ENST00000494248 PLA2G2CQ5R387 149 aa7.33□□□□□ -1.24
PTPN12-212ENST00000494248 NPDC1Q9NQX5 325 aaPredicted RBP7.33□□□□□ -1.24
PTPN12-212ENST00000494248 PCDHB3Q9Y5E6 796 aa7.33□□□□□ -1.24
PTPN12-212ENST00000494248 S1PR4O95977 384 aa7.32□□□□□ -1.24
PTPN12-212ENST00000494248 SLF2Q8IX21 1173 aa7.32□□□□□ -1.24
PTPN12-212ENST00000494248 SPDYE16A6NNV3 312 aaPredicted RBP7.31□□□□□ -1.24
PTPN12-212ENST00000494248 PADI6Q6TGC4 694 aa7.31□□□□□ -1.24
PTPN12-212ENST00000494248 TOR4AQ9NXH8 423 aa7.31□□□□□ -1.24
PTPN12-212ENST00000494248 RBM27Q9P2N5 1060 aaKnown RBP7.31□□□□□ -1.24
PTPN12-212ENST00000494248 ADAM23O75077 832 aa7.3□□□□□ -1.24
PTPN12-212ENST00000494248 NPAS3Q8IXF0 933 aa7.3□□□□□ -1.24
PTPN12-212ENST00000494248 EYA1Q99502 592 aa7.3□□□□□ -1.24
PTPN12-212ENST00000494248 KRTAP4-7Q9BYR0 210 aa7.3□□□□□ -1.24
PTPN12-212ENST00000494248 ERBB4Q15303 1308 aa7.29□□□□□ -1.24
PTPN12-212ENST00000494248 FOXC1Q12948 553 aa7.29□□□□□ -1.24
PTPN12-212ENST00000494248 NECTIN2Q92692 538 aa7.28□□□□□ -1.24
PTPN12-212ENST00000494248 KIFC2Q96AC6 838 aa7.28□□□□□ -1.24
PTPN12-212ENST00000494248 RNF225M0QZC1 329 aaPredicted RBP7.27□□□□□ -1.25
PTPN12-212ENST00000494248 H3BM21 787 aa7.26□□□□□ -1.25
PTPN12-212ENST00000494248 Q8N3U1 123 aa7.26□□□□□ -1.25
PTPN12-212ENST00000494248 DNMT3AQ9Y6K1 912 aaPredicted RBP7.26□□□□□ -1.25
PTPN12-212ENST00000494248 VEGFBP49765 207 aa7.23□□□□□ -1.25
PTPN12-212ENST00000494248 PRR14Q9BWN1 585 aa7.23□□□□□ -1.25
PTPN12-212ENST00000494248 ARIH1Q9Y4X5 557 aaPredicted RBP7.23□□□□□ -1.25
PTPN12-212ENST00000494248 ACTN4O43707 911 aaKnown RBP7.22□□□□□ -1.25
PTPN12-212ENST00000494248 ADH1BP00325 375 aa7.21□□□□□ -1.26
PTPN12-212ENST00000494248 CYP4X1Q8N118 509 aa7.21□□□□□ -1.26
PTPN12-212ENST00000494248 FOXK2Q01167 660 aa7.2□□□□□ -1.26
PTPN12-212ENST00000494248 SLC6A16Q9GZN6 736 aa7.19□□□□□ -1.26
PTPN12-212ENST00000494248 SLC10A3P09131 477 aa7.18□□□□□ -1.26
PTPN12-212ENST00000494248 E2F4Q16254 413 aa7.18□□□□□ -1.26
PTPN12-212ENST00000494248 TMEM134Q9H6X4 195 aa7.18□□□□□ -1.26
PTPN12-212ENST00000494248 CFHP08603 1231 aa7.17□□□□□ -1.26
PTPN12-212ENST00000494248 DNAJB2P25686 324 aa7.16□□□□□ -1.26
PTPN12-212ENST00000494248 SLC4A3P48751 1232 aa7.16□□□□□ -1.26
PTPN12-212ENST00000494248 SCUBE3Q8IX30 993 aa7.16□□□□□ -1.26
PTPN12-212ENST00000494248 DCAF8L2P0C7V8 631 aa7.15□□□□□ -1.26
PTPN12-212ENST00000494248 FAM161AQ3B820 660 aa7.15□□□□□ -1.26
PTPN12-212ENST00000494248 KMT5BQ4FZB7 885 aa7.14□□□□□ -1.27
PTPN12-212ENST00000494248 NR1I2O75469 434 aa7.13□□□□□ -1.27
PTPN12-212ENST00000494248 PUS10Q3MIT2 529 aaKnown RBP7.13□□□□□ -1.27
PTPN12-212ENST00000494248 ADGRG1Q9Y653 693 aa7.13□□□□□ -1.27
PTPN12-212ENST00000494248 RCCD1A6NED2 376 aa7.12□□□□□ -1.27
PTPN12-212ENST00000494248 RPIAP49247 311 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms