RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADAMTS8Q9UP79 889 aa20.54■□□□□ 0.88
CCDC88B-209ENST00000494080 ANKRD30BQ9BXX2 1392 aa20.53■□□□□ 0.88
CCDC88B-209ENST00000494080 CALD1Q05682 793 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-209ENST00000494080 CDCA7LQ96GN5 454 aa20.52■□□□□ 0.88
CCDC88B-209ENST00000494080 MAGI1Q96QZ7 1491 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-209ENST00000494080 RAPGEF3O95398 923 aa20.52■□□□□ 0.88
CCDC88B-209ENST00000494080 OS9Q13438 667 aaPredicted RBP20.52■□□□□ 0.87
CCDC88B-209ENST00000494080 LTV1Q96GA3 475 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-209ENST00000494080 CABP2Q9NPB3 220 aa20.51■□□□□ 0.87
CCDC88B-209ENST00000494080 E9PSI1 815 aa20.51■□□□□ 0.87
CCDC88B-209ENST00000494080 PTPRKQ15262 1439 aa20.5■□□□□ 0.87
CCDC88B-209ENST00000494080 COG6Q9Y2V7 657 aa20.5■□□□□ 0.87
CCDC88B-209ENST00000494080 GGNBP2Q9H3C7 697 aa20.49■□□□□ 0.87
CCDC88B-209ENST00000494080 CAMSAP2Q08AD1 1489 aa20.49■□□□□ 0.87
CCDC88B-209ENST00000494080 MFAP1P55081 439 aaKnown RBP20.48■□□□□ 0.87
CCDC88B-209ENST00000494080 AMPHP49418 695 aa20.48■□□□□ 0.87
CCDC88B-209ENST00000494080 GBP4Q96PP9 640 aa20.48■□□□□ 0.87
CCDC88B-209ENST00000494080 FRAT2O75474 233 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-209ENST00000494080 BRD4O60885 1362 aaPredicted RBP20.47■□□□□ 0.87
CCDC88B-209ENST00000494080 NCOA1Q15788 1441 aa20.47■□□□□ 0.87
CCDC88B-209ENST00000494080 PLCB2Q00722 1185 aa20.47■□□□□ 0.87
CCDC88B-209ENST00000494080 BACH2Q9BYV9 841 aa20.46■□□□□ 0.87
CCDC88B-209ENST00000494080 PMFBP1Q8TBY8 1022 aa20.46■□□□□ 0.87
CCDC88B-209ENST00000494080 PNISRQ8TF01 805 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-209ENST00000494080 COG3Q96JB2 828 aa20.45■□□□□ 0.86
CCDC88B-209ENST00000494080 SLC12A5Q9H2X9 1139 aa20.45■□□□□ 0.86
CCDC88B-209ENST00000494080 PLEKHH2Q8IVE3 1493 aa20.45■□□□□ 0.86
CCDC88B-209ENST00000494080 PPP2R1AP30153 589 aa20.44■□□□□ 0.86
CCDC88B-209ENST00000494080 THOC2Q8NI27 1593 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-209ENST00000494080 MTHFSP49914 203 aa20.43■□□□□ 0.86
CCDC88B-209ENST00000494080 SLC4A10Q6U841 1118 aa20.42■□□□□ 0.86
CCDC88B-209ENST00000494080 UBE2Q2Q8WVN8 375 aa20.41■□□□□ 0.86
CCDC88B-209ENST00000494080 DIAPH1O60610 1272 aaKnown RBP20.41■□□□□ 0.86
CCDC88B-209ENST00000494080 CCDC141Q6ZP82 1450 aa20.41■□□□□ 0.86
CCDC88B-209ENST00000494080 CSB-PGBD3P0DP91 1061 aa20.39■□□□□ 0.85
CCDC88B-209ENST00000494080 STK31Q9BXU1 1019 aa20.39■□□□□ 0.85
CCDC88B-209ENST00000494080 RIPK4P57078 832 aa20.39■□□□□ 0.85
CCDC88B-209ENST00000494080 RUNDC1Q96C34 613 aa20.38■□□□□ 0.85
CCDC88B-209ENST00000494080 LMOD3Q0VAK6 560 aa20.38■□□□□ 0.85
CCDC88B-209ENST00000494080 ZKSCAN2Q63HK3 967 aa20.37■□□□□ 0.85
CCDC88B-209ENST00000494080 FOXD4L1Q9NU39 408 aa20.37■□□□□ 0.85
CCDC88B-209ENST00000494080 HMOX1P09601 288 aa20.36■□□□□ 0.85
CCDC88B-209ENST00000494080 MAPKBP1O60336 1514 aa20.36■□□□□ 0.85
CCDC88B-209ENST00000494080 KCNJ4P48050 445 aa20.35■□□□□ 0.85
CCDC88B-209ENST00000494080 FAM43AQ8N2R8 423 aa20.35■□□□□ 0.85
CCDC88B-209ENST00000494080 PRAM1Q96QH2 718 aa20.34■□□□□ 0.85
CCDC88B-209ENST00000494080 AMER1Q5JTC6 1135 aaPredicted RBP20.34■□□□□ 0.85
CCDC88B-209ENST00000494080 TCP11L2Q8N4U5 519 aa20.34■□□□□ 0.85
CCDC88B-209ENST00000494080 GPATCH8Q9UKJ3 1502 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-209ENST00000494080 SMG6Q86US8 1419 aaKnown RBP20.33■□□□□ 0.85
CCDC88B-209ENST00000494080 ERBINQ96RT1 1412 aa20.32■□□□□ 0.84
CCDC88B-209ENST00000494080 DDX11L8A8MPP1 907 aa20.32■□□□□ 0.84
CCDC88B-209ENST00000494080 RPRD2Q5VT52 1461 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-209ENST00000494080 PANK1Q8TE04 598 aa20.31■□□□□ 0.84
CCDC88B-209ENST00000494080 PTMSP20962 102 aa20.31■□□□□ 0.84
CCDC88B-209ENST00000494080 NGEFQ8N5V2 710 aa20.3■□□□□ 0.84
CCDC88B-209ENST00000494080 TAOK2Q9UL54 1235 aa20.3■□□□□ 0.84
CCDC88B-209ENST00000494080 NUP153P49790 1475 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-209ENST00000494080 KIF14Q15058 1648 aa20.29■□□□□ 0.84
CCDC88B-209ENST00000494080 ZNF330Q9Y3S2 320 aaPredicted RBP20.29■□□□□ 0.84
CCDC88B-209ENST00000494080 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.29■□□□□ 0.84
CCDC88B-209ENST00000494080 CDK11BP21127 795 aaKnown RBP20.28■□□□□ 0.84
CCDC88B-209ENST00000494080 UGGT2Q9NYU1 1516 aa20.28■□□□□ 0.84
CCDC88B-209ENST00000494080 DZIP1LQ8IYY4 767 aaKnown RBP20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 FGD1P98174 961 aa20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 TXNDC2Q86VQ3 553 aa20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 SKAP1Q86WV1 359 aa20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 ATP10BO94823 1461 aa20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 A0A0U1RQG5 324 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 CHAF1AQ13111 956 aaPredicted RBP20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 SLC52A1Q9NWF4 448 aa20.26■□□□□ 0.83
CCDC88B-209ENST00000494080 ANKRD45Q5TZF3 282 aa20.25■□□□□ 0.83
CCDC88B-209ENST00000494080 CHMP5Q9NZZ3 219 aa20.24■□□□□ 0.83
CCDC88B-209ENST00000494080 NUTM2GQ5VZR2 741 aa20.24■□□□□ 0.83
CCDC88B-209ENST00000494080 CABP1Q9NZU7 370 aa20.24■□□□□ 0.83
CCDC88B-209ENST00000494080 DDX49Q9Y6V7 483 aaKnown RBP20.23■□□□□ 0.83
CCDC88B-209ENST00000494080 HMMRO75330 724 aa20.23■□□□□ 0.83
CCDC88B-209ENST00000494080 NECTIN2Q92692 538 aa20.23■□□□□ 0.83
CCDC88B-209ENST00000494080 PODXL2Q9NZ53 605 aa20.23■□□□□ 0.83
CCDC88B-209ENST00000494080 FAM13BQ9NYF5 915 aa20.22■□□□□ 0.83
CCDC88B-209ENST00000494080 KIAA2012Q0VF49 1180 aa20.22■□□□□ 0.83
CCDC88B-209ENST00000494080 NAP1L2Q9ULW6 460 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-209ENST00000494080 MCCP23508 829 aa20.21■□□□□ 0.83
CCDC88B-209ENST00000494080 BCAR3O75815 825 aa20.21■□□□□ 0.83
CCDC88B-209ENST00000494080 TRIM6-TRIM34B2RNG4 842 aa20.21■□□□□ 0.83
CCDC88B-209ENST00000494080 ADGRF5Q8IZF2 1346 aa20.21■□□□□ 0.83
CCDC88B-209ENST00000494080 CD109Q6YHK3 1445 aa20.2■□□□□ 0.82
CCDC88B-209ENST00000494080 DDX19BQ9UMR2 479 aa20.2■□□□□ 0.82
CCDC88B-209ENST00000494080 CDK19Q9BWU1 502 aa20.2■□□□□ 0.82
CCDC88B-209ENST00000494080 RAPGEF6Q8TEU7 1601 aa20.19■□□□□ 0.82
CCDC88B-209ENST00000494080 ADGRL1O94910 1474 aa20.19■□□□□ 0.82
CCDC88B-209ENST00000494080 PRKAR2BP31323 418 aa20.18■□□□□ 0.82
CCDC88B-209ENST00000494080 MRE11P49959 708 aa20.18■□□□□ 0.82
CCDC88B-209ENST00000494080 TSR2Q969E8 191 aaKnown RBP20.18■□□□□ 0.82
CCDC88B-209ENST00000494080 CTTNBP2Q8WZ74 1663 aa20.18■□□□□ 0.82
CCDC88B-209ENST00000494080 CFAP44Q96MT7 982 aa20.17■□□□□ 0.82
CCDC88B-209ENST00000494080 KIAA1211Q6ZU35 1233 aa20.17■□□□□ 0.82
CCDC88B-209ENST00000494080 EIF2S2P20042 333 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-209ENST00000494080 PSME1Q06323 249 aa20.16■□□□□ 0.82
CCDC88B-209ENST00000494080 SKOR2Q2VWA4 1001 aaPredicted RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms