RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 PPM1FP49593 454 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 ILDR1Q86SU0 546 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 YTHDC1Q96MU7 727 aaKnown RBP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 MS4A1P11836 297 aa4.59□□□□□ -1.67
CSMD3-207ENST00000493303 ZEB1P37275 1124 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 PDE3BQ13370 1112 aa4.59□□□□□ -1.67
CSMD3-207ENST00000493303 CABP2Q9NPB3 220 aa4.59□□□□□ -1.67
CSMD3-207ENST00000493303 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 EIF3DO15371 548 aaKnown RBP eCLIP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 GIGYF1O75420 1035 aaPredicted RBP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 RNF17Q9BXT8 1623 aaKnown RBP4.59□□□□□ -1.67
CSMD3-207ENST00000493303 ANP32CO43423 234 aa4.59□□□□□ -1.68
CSMD3-207ENST00000493303 RNF216Q9NWF9 866 aaPredicted RBP4.59□□□□□ -1.68
CSMD3-207ENST00000493303 STK32BQ9NY57 414 aa4.59□□□□□ -1.68
CSMD3-207ENST00000493303 PTPRTO14522 1441 aa4.59□□□□□ -1.68
CSMD3-207ENST00000493303 ITSN2Q9NZM3 1697 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 KIDINS220Q9ULH0 1771 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 CDC42BPBQ9Y5S2 1711 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 GRIN3BO60391 1043 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 GDPD2Q9HCC8 539 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 BIN2Q9UBW5 565 aaPredicted RBP4.58□□□□□ -1.68
CSMD3-207ENST00000493303 G3BP2Q9UN86 482 aaKnown RBP4.58□□□□□ -1.68
CSMD3-207ENST00000493303 HDAC5Q9UQL6 1122 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 UQCRHLA0A096LP55 91 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 CARMIL2Q6F5E8 1435 aa4.58□□□□□ -1.68
CSMD3-207ENST00000493303 KIF2CQ99661 725 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 HINFPQ9BQA5 517 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 NEFLP07196 543 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 PLCB2Q00722 1185 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 HS1BP3Q53T59 392 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 ISY1Q9ULR0 285 aaKnown RBP4.57□□□□□ -1.68
CSMD3-207ENST00000493303 MED14O60244 1454 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 PLA2R1Q13018 1463 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 KDM5DQ9BY66 1539 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 PPP2R3CQ969Q6 453 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 CARD10Q9BWT7 1032 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 RGPD3A6NKT7 1758 aaPredicted RBP4.57□□□□□ -1.68
CSMD3-207ENST00000493303 RGPD4Q7Z3J3 1758 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 CAPN15O75808 1086 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 DMWDQ09019 674 aa4.57□□□□□ -1.68
CSMD3-207ENST00000493303 RAD54L2Q9Y4B4 1467 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 MROH1Q8NDA8 1641 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 QRICH2Q9H0J4 1663 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 SRGAP2BP0DMP2 458 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.56□□□□□ -1.68
CSMD3-207ENST00000493303 WDR70Q9NW82 654 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 KDM2AQ9Y2K7 1162 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 SETD1AO15047 1707 aaKnown RBP4.56□□□□□ -1.68
CSMD3-207ENST00000493303 HNRNPMP52272 730 aaKnown RBP eCLIP4.56□□□□□ -1.68
CSMD3-207ENST00000493303 SART3Q15020 963 aaKnown RBP4.56□□□□□ -1.68
CSMD3-207ENST00000493303 CCDC136Q96JN2 1154 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 ABCA6Q8N139 1617 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 TTLL12Q14166 644 aaPredicted RBP4.56□□□□□ -1.68
CSMD3-207ENST00000493303 CHAMP1Q96JM3 812 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 EVA1BQ9NVM1 165 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 SFI1A8K8P3 1242 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 TSPY4P0CV99 314 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 TSPY10P0CW01 314 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 CFAP36Q96G28 342 aa4.56□□□□□ -1.68
CSMD3-207ENST00000493303 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.56□□□□□ -1.68
CSMD3-207ENST00000493303 ZBTB33Q86T24 672 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 DIP2AQ14689 1571 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 DIP2CQ9Y2E4 1556 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 DCDC2CA8MYV0 355 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 SCG3Q8WXD2 468 aaKnown RBP4.55□□□□□ -1.68
CSMD3-207ENST00000493303 PNNQ9H307 717 aaKnown RBP4.55□□□□□ -1.68
CSMD3-207ENST00000493303 EVC2Q86UK5 1308 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 ANO9A1A5B4 782 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 TCIRG1Q13488 830 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 HCN4Q9Y3Q4 1203 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 PDE4AP27815 886 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 SYMPKQ92797 1274 aaKnown RBP4.55□□□□□ -1.68
CSMD3-207ENST00000493303 STK24Q9Y6E0 443 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 RAB3GAP2Q9H2M9 1393 aa4.55□□□□□ -1.68
CSMD3-207ENST00000493303 CYB5RLQ6IPT4 315 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 NBPF3Q9H094 633 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 CRYBG1Q9Y4K1 1723 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 ADGBQ8N7X0 1667 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 MYO3AQ8NEV4 1616 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 TULP1O00294 542 aaPredicted RBP4.54□□□□□ -1.68
CSMD3-207ENST00000493303 CCDC152Q4G0S7 254 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 NOM1Q5C9Z4 860 aaKnown RBP4.54□□□□□ -1.68
CSMD3-207ENST00000493303 V9GY48 417 aaPredicted RBP4.54□□□□□ -1.68
CSMD3-207ENST00000493303 LRPPRCP42704 1394 aaKnown RBP4.54□□□□□ -1.68
CSMD3-207ENST00000493303 SPRYD3Q8NCJ5 442 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 CPLX3Q8WVH0 158 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 HECW1Q76N89 1606 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 PALM3A6NDB9 673 aaPredicted RBP4.54□□□□□ -1.68
CSMD3-207ENST00000493303 DDRGK1Q96HY6 314 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 RAB23Q9ULC3 237 aa4.54□□□□□ -1.68
CSMD3-207ENST00000493303 DPY19L2Q6NUT2 758 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 R3HCC1Q9Y3T6 440 aaKnown RBP4.53□□□□□ -1.68
CSMD3-207ENST00000493303 ZNF518AQ6AHZ1 1483 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 LDHCP07864 332 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 NBPF11Q86T75 865 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 FAM83GA6ND36 823 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 SLC51AQ86UW1 340 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 CEP131Q9UPN4 1083 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 SHPRHQ149N8 1683 aa4.53□□□□□ -1.68
CSMD3-207ENST00000493303 MEI4A8MW99 385 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms