RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 ZNF662Q6ZS27 426 aa5.68□□□□□ -1.5
BRCA1-220ENST00000492859 FAM117AQ9C073 453 aa5.68□□□□□ -1.5
BRCA1-220ENST00000492859 KIAA1522Q9P206 1035 aaPredicted RBP5.68□□□□□ -1.5
BRCA1-220ENST00000492859 TESPA1A2RU30 521 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-220ENST00000492859 AK7Q96M32 723 aa5.67□□□□□ -1.5
BRCA1-220ENST00000492859 MFRPQ9BY79 579 aa5.67□□□□□ -1.5
BRCA1-220ENST00000492859 MCCD1P59942 119 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-220ENST00000492859 TMEM92Q6UXU6 159 aa5.67□□□□□ -1.5
BRCA1-220ENST00000492859 SREK1Q8WXA9 508 aaKnown RBP5.67□□□□□ -1.5
BRCA1-220ENST00000492859 EVI5LQ96CN4 794 aa5.67□□□□□ -1.5
BRCA1-220ENST00000492859 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.67□□□□□ -1.5
BRCA1-220ENST00000492859 BOLA1Q9Y3E2 137 aa5.67□□□□□ -1.5
BRCA1-220ENST00000492859 PATL2C9JE40 543 aaKnown RBP5.66□□□□□ -1.5
BRCA1-220ENST00000492859 ST18O60284 1047 aa5.66□□□□□ -1.5
BRCA1-220ENST00000492859 RAB11FIP3O75154 756 aa5.66□□□□□ -1.5
BRCA1-220ENST00000492859 KCNA1Q09470 495 aa5.66□□□□□ -1.5
BRCA1-220ENST00000492859 FBXO22Q8NEZ5 403 aa5.66□□□□□ -1.5
BRCA1-220ENST00000492859 RBM47A0AV96 593 aaKnown RBP5.65□□□□□ -1.5
BRCA1-220ENST00000492859 ERCC3P19447 782 aa5.65□□□□□ -1.5
BRCA1-220ENST00000492859 RBM26Q5T8P6 1007 aaKnown RBP5.65□□□□□ -1.5
BRCA1-220ENST00000492859 C3orf67Q6ZVT6 689 aa5.65□□□□□ -1.5
BRCA1-220ENST00000492859 FNBP4Q8N3X1 1017 aaPredicted RBP5.65□□□□□ -1.5
BRCA1-220ENST00000492859 L3MBTL3Q96JM7 780 aaPredicted RBP5.65□□□□□ -1.5
BRCA1-220ENST00000492859 GIMAP6Q6P9H5 292 aa5.64□□□□□ -1.51
BRCA1-220ENST00000492859 PROSER2Q86WR7 435 aaPredicted RBP5.64□□□□□ -1.51
BRCA1-220ENST00000492859 MICALL2Q8IY33 904 aa5.64□□□□□ -1.51
BRCA1-220ENST00000492859 SEMA3EO15041 775 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 SOX12O15370 315 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 PPFIA4O75335 1185 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 PPP1R37O75864 691 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 MAP4K4O95819 1239 aaPredicted RBP5.63□□□□□ -1.51
BRCA1-220ENST00000492859 FOXD4Q12950 439 aaPredicted RBP5.63□□□□□ -1.51
BRCA1-220ENST00000492859 TSHZ1Q6ZSZ6 1077 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 TMEM121BQ9BXQ6 578 aaPredicted RBP5.63□□□□□ -1.51
BRCA1-220ENST00000492859 RPS6KL1Q9Y6S9 549 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 PLEKHG3A1L390 1219 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 PEX14O75381 377 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 FOSBP53539 338 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 MYBPC2Q14324 1141 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 RINLQ6ZS11 566 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 MORC4Q8TE76 937 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 MTA3Q9BTC8 594 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 UBA5Q9GZZ9 404 aa5.63□□□□□ -1.51
BRCA1-220ENST00000492859 CLGNO14967 610 aa5.62□□□□□ -1.51
BRCA1-220ENST00000492859 GTF2E1P29083 439 aaPredicted RBP5.62□□□□□ -1.51
BRCA1-220ENST00000492859 PDE4DQ08499 809 aa5.62□□□□□ -1.51
BRCA1-220ENST00000492859 SND1Q7KZF4 910 aaKnown RBP eCLIP5.62□□□□□ -1.51
BRCA1-220ENST00000492859 ZNF622Q969S3 477 aaKnown RBP eCLIP5.62□□□□□ -1.515e-8■■■□□ 17.3
BRCA1-220ENST00000492859 MARVELD3Q96A59 401 aa5.62□□□□□ -1.51
BRCA1-220ENST00000492859 MRRFQ96E11 262 aaKnown RBP5.62□□□□□ -1.51
BRCA1-220ENST00000492859 TSR1Q2NL82 804 aaKnown RBP5.61□□□□□ -1.51
BRCA1-220ENST00000492859 HOXB3P14651 431 aaPredicted RBP5.6□□□□□ -1.51
BRCA1-220ENST00000492859 LONRF3Q496Y0 759 aa5.6□□□□□ -1.51
BRCA1-220ENST00000492859 C8orf37Q96NL8 207 aa5.6□□□□□ -1.51
BRCA1-220ENST00000492859 TRIM66O15016 1216 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 NLRP6P59044 892 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 MCM6Q14566 821 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 KRBA2Q6ZNG9 492 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 SMC5Q8IY18 1101 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 UBXN4Q92575 508 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 POM121Q96HA1 1249 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 CDCA7Q9BWT1 371 aaPredicted RBP5.59□□□□□ -1.51
BRCA1-220ENST00000492859 PPP1R1BQ9UD71 204 aaPredicted RBP5.59□□□□□ -1.51
BRCA1-220ENST00000492859 IVNS1ABPQ9Y6Y0 642 aa5.59□□□□□ -1.51
BRCA1-220ENST00000492859 POTEB3A0JP26 581 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 CCER2I3L3R5 266 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 PPP1R15AO75807 674 aaPredicted RBP5.59□□□□□ -1.52
BRCA1-220ENST00000492859 TCF3P15923 654 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 CDCA8Q53HL2 280 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 POTEBQ6S5H4 581 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 SPNS2Q8IVW8 549 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 SDR16C5Q8N3Y7 309 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 KLHL42Q9P2K6 505 aa5.59□□□□□ -1.52
BRCA1-220ENST00000492859 HMGB1P1B2RPK0 211 aaPredicted RBP5.58□□□□□ -1.52
BRCA1-220ENST00000492859 G3V3G9 751 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 ZFYVE27Q5T4F4 411 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 CADPS2Q86UW7 1296 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 TXNDC2Q86VQ3 553 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 VTI1AQ96AJ9 217 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 GPATCH3Q96I76 525 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 PNMA2Q9UL42 364 aa5.58□□□□□ -1.52
BRCA1-220ENST00000492859 CREB3O43889 395 aa5.57□□□□□ -1.52
BRCA1-220ENST00000492859 RTL5Q5HYW3 569 aaPredicted RBP5.57□□□□□ -1.52
BRCA1-220ENST00000492859 CLEC4GQ6UXB4 293 aa5.57□□□□□ -1.52
BRCA1-220ENST00000492859 RBM46Q8TBY0 533 aaKnown RBP5.57□□□□□ -1.52
BRCA1-220ENST00000492859 ARHGEF1Q92888 912 aaKnown RBP5.57□□□□□ -1.52
BRCA1-220ENST00000492859 ACIN1Q9UKV3 1341 aaKnown RBP5.56□□□□□ -1.52
BRCA1-220ENST00000492859 TTC36A6NLP5 189 aa5.56□□□□□ -1.52
BRCA1-220ENST00000492859 ARID4AP29374 1257 aaPredicted RBP5.56□□□□□ -1.52
BRCA1-220ENST00000492859 MMP14P50281 582 aa5.56□□□□□ -1.52
BRCA1-220ENST00000492859 SKIV2LQ15477 1246 aaKnown RBP5.56□□□□□ -1.52
BRCA1-220ENST00000492859 CCDC181Q5TID7 509 aa5.56□□□□□ -1.52
BRCA1-220ENST00000492859 NBPF11Q86T75 865 aa5.56□□□□□ -1.52
BRCA1-220ENST00000492859 MAGEC2Q9UBF1 373 aaPredicted RBP5.56□□□□□ -1.52
BRCA1-220ENST00000492859 PARNO95453 639 aaKnown RBP5.55□□□□□ -1.52
BRCA1-220ENST00000492859 PAX3P23760 479 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 PMM1Q92871 262 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 STAC3Q96MF2 364 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 MAF1Q9H063 256 aa5.55□□□□□ -1.52
BRCA1-220ENST00000492859 EXOC5O00471 708 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms