RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 RDXP35241 583 aaKnown RBP8.84□□□□□ -0.99
SYNE1-228ENST00000490135 DCAF11Q8TEB1 546 aa8.84□□□□□ -0.99
SYNE1-228ENST00000490135 KIF16BQ96L93 1317 aa8.84□□□□□ -0.99
SYNE1-228ENST00000490135 MFAP1P55081 439 aaKnown RBP8.83□□□□□ -1
SYNE1-228ENST00000490135 ODF2Q5BJF6 829 aa8.83□□□□□ -1
SYNE1-228ENST00000490135 MORC1Q86VD1 984 aa8.83□□□□□ -1
SYNE1-228ENST00000490135 CHMP4CQ96CF2 233 aa8.83□□□□□ -1
SYNE1-228ENST00000490135 XPCQ01831 940 aaPredicted RBP8.83□□□□□ -1
SYNE1-228ENST00000490135 STK31Q9BXU1 1019 aa8.83□□□□□ -1
SYNE1-228ENST00000490135 AMOTL1Q8IY63 956 aa8.83□□□□□ -1
SYNE1-228ENST00000490135 ZNF592Q92610 1267 aa8.83□□□□□ -1
SYNE1-228ENST00000490135 XRCC6P12956 609 aaKnown RBP eCLIP8.82□□□□□ -1
SYNE1-228ENST00000490135 CT47A1Q5JQC4 288 aaPredicted RBP8.82□□□□□ -1
SYNE1-228ENST00000490135 CCDC43Q96MW1 224 aaKnown RBP8.82□□□□□ -1
SYNE1-228ENST00000490135 GOLGA6L19H0YKK7 550 aa8.82□□□□□ -1
SYNE1-228ENST00000490135 GIMAP7Q8NHV1 300 aa8.82□□□□□ -1
SYNE1-228ENST00000490135 H3BQV1 296 aa8.82□□□□□ -1
SYNE1-228ENST00000490135 IFFO2Q5TF58 517 aa8.82□□□□□ -1
SYNE1-228ENST00000490135 ANKRD20A12PQ8NF67 263 aa8.82□□□□□ -1
SYNE1-228ENST00000490135 NOL10Q9BSC4 688 aaKnown RBP8.82□□□□□ -1
SYNE1-228ENST00000490135 RWDD1Q9H446 243 aaPredicted RBP8.82□□□□□ -1
SYNE1-228ENST00000490135 GOLIM4O00461 696 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 TMF1P82094 1093 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 ITPRIPQ8IWB1 547 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 RAD21O60216 631 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 PAF1Q8N7H5 531 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 RUFY1Q96T51 708 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 HDGFL2Q7Z4V5 671 aaPredicted RBP8.81□□□□□ -1
SYNE1-228ENST00000490135 AK7Q96M32 723 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 SPAG9O60271 1321 aaKnown RBP8.81□□□□□ -1
SYNE1-228ENST00000490135 OFD1O75665 1012 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 CCDC191Q8NCU4 936 aa8.81□□□□□ -1
SYNE1-228ENST00000490135 RBM28Q9NW13 759 aaKnown RBP8.81□□□□□ -1
SYNE1-228ENST00000490135 TRHP20396 242 aaPredicted RBP8.8□□□□□ -1
SYNE1-228ENST00000490135 LEKR1Q6ZMV7 388 aa8.8□□□□□ -1
SYNE1-228ENST00000490135 SYNE3Q6ZMZ3 975 aa8.8□□□□□ -1
SYNE1-228ENST00000490135 BECN2A8MW95 431 aa8.8□□□□□ -1
SYNE1-228ENST00000490135 NOL8Q76FK4 1167 aaKnown RBP8.8□□□□□ -1
SYNE1-228ENST00000490135 HSP90AB3PQ58FF7 597 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 MNS1Q8NEH6 495 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 CTR9Q6PD62 1173 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 RSF1Q96T23 1441 aaPredicted RBP8.79□□□□□ -1
SYNE1-228ENST00000490135 FAM184AQ8NB25 1140 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 MYCBPQ99417 103 aaPredicted RBP8.79□□□□□ -1
SYNE1-228ENST00000490135 PANK2Q9BZ23 570 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 RALBP1Q15311 655 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 CLIP1P30622 1438 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 DCTN1Q14203 1278 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 CRBNQ96SW2 442 aa8.79□□□□□ -1
SYNE1-228ENST00000490135 SLC26A8Q96RN1 970 aa8.78□□□□□ -1
SYNE1-228ENST00000490135 ARGLU1Q9NWB6 273 aaPredicted RBP8.78□□□□□ -1
SYNE1-228ENST00000490135 PSMD1Q99460 953 aa8.78□□□□□ -1
SYNE1-228ENST00000490135 KANK1Q14678 1352 aa8.78□□□□□ -1
SYNE1-228ENST00000490135 MCM4P33991 863 aa8.78□□□□□ -1
SYNE1-228ENST00000490135 DHX57Q6P158 1386 aaKnown RBP8.78□□□□□ -1
SYNE1-228ENST00000490135 ST18O60284 1047 aa8.77□□□□□ -1
SYNE1-228ENST00000490135 ZRSR2Q15696 482 aaKnown RBP8.77□□□□□ -1
SYNE1-228ENST00000490135 CFDP1Q9UEE9 299 aaPredicted RBP8.77□□□□□ -1
SYNE1-228ENST00000490135 IGSF3O75054 1194 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 ACBD3Q9H3P7 528 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-228ENST00000490135 DCAF8L1A6NGE4 600 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 USP8P40818 1118 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 MLECQ14165 292 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 HSP90AB2PQ58FF8 381 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 DHX16O60231 1041 aaKnown RBP8.77□□□□□ -1.01
SYNE1-228ENST00000490135 TRIM29Q14134 588 aa8.77□□□□□ -1.01
SYNE1-228ENST00000490135 SAMD1Q6SPF0 538 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-228ENST00000490135 MPHOSPH10O00566 681 aaKnown RBP8.76□□□□□ -1.01
SYNE1-228ENST00000490135 NAP1L1P55209 391 aaKnown RBP8.76□□□□□ -1.01
SYNE1-228ENST00000490135 ZFYVE27Q5T4F4 411 aa8.76□□□□□ -1.01
SYNE1-228ENST00000490135 CCDC91Q7Z6B0 441 aa8.76□□□□□ -1.01
SYNE1-228ENST00000490135 PMFBP1Q8TBY8 1022 aa8.76□□□□□ -1.01
SYNE1-228ENST00000490135 PAIP2Q9BPZ3 127 aaKnown RBP8.76□□□□□ -1.01
SYNE1-228ENST00000490135 TERF1P54274 439 aa8.76□□□□□ -1.01
SYNE1-228ENST00000490135 CPLX2Q6PUV4 134 aaKnown RBP8.76□□□□□ -1.01
SYNE1-228ENST00000490135 HOOK1Q9UJC3 728 aaKnown RBP8.76□□□□□ -1.01
SYNE1-228ENST00000490135 SAFB2Q14151 953 aaKnown RBP eCLIP8.75□□□□□ -1.01
SYNE1-228ENST00000490135 ATP6V1DQ9Y5K8 247 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 AKNAQ7Z591 1439 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 ZNF830Q96NB3 372 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-228ENST00000490135 H0YHG0 523 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 GTF2F1P35269 517 aaKnown RBP eCLIP8.75□□□□□ -1.01
SYNE1-228ENST00000490135 SARNPP82979 210 aaKnown RBP8.75□□□□□ -1.01
SYNE1-228ENST00000490135 WWC2Q6AWC2 1192 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 HSPA5P11021 654 aaKnown RBP8.75□□□□□ -1.01
SYNE1-228ENST00000490135 RASSF4Q9H2L5 321 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-228ENST00000490135 MCTP1Q6DN14 999 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 MRVI1Q9Y6F6 885 aa8.75□□□□□ -1.01
SYNE1-228ENST00000490135 TNIKQ9UKE5 1360 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 LRRFIP1Q32MZ4 808 aaKnown RBP8.74□□□□□ -1.01
SYNE1-228ENST00000490135 IFT57Q9NWB7 429 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 ARID4AP29374 1257 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-228ENST00000490135 PRIMPOLQ96LW4 560 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 MYO6Q9UM54 1294 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 NEXNQ0ZGT2 675 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 PLIN1O60240 522 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 TTLL5Q6EMB2 1281 aa8.74□□□□□ -1.01
SYNE1-228ENST00000490135 SLC4A10Q6U841 1118 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms