RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 PLPPR3Q6T4P5 718 aa29.56■■■□□ 2.32
SND1-214ENST00000489417 ADGRF5Q8IZF2 1346 aa29.56■■■□□ 2.32
SND1-214ENST00000489417 ROCK2O75116 1388 aaKnown RBP29.55■■■□□ 2.32
SND1-214ENST00000489417 KDM5AP29375 1690 aaKnown RBP29.54■■■□□ 2.32
SND1-214ENST00000489417 EIF4G2P78344 907 aaKnown RBP eCLIP29.54■■■□□ 2.32
SND1-214ENST00000489417 GPRASP1Q5JY77 1395 aa29.53■■■□□ 2.32
SND1-214ENST00000489417 KIAA1210Q9ULL0 1709 aa29.52■■■□□ 2.32
SND1-214ENST00000489417 VGFO15240 615 aaPredicted RBP29.51■■■□□ 2.31
SND1-214ENST00000489417 ZFYVE9O95405 1425 aa29.51■■■□□ 2.31
SND1-214ENST00000489417 HSPA5P11021 654 aaKnown RBP29.51■■■□□ 2.31
SND1-214ENST00000489417 CARD11Q9BXL7 1154 aa29.51■■■□□ 2.31
SND1-214ENST00000489417 LAMC1P11047 1609 aa29.51■■■□□ 2.31
SND1-214ENST00000489417 UBR1Q8IWV7 1749 aa29.5■■■□□ 2.31
SND1-214ENST00000489417 NBPF1Q3BBV0 1214 aa29.49■■■□□ 2.31
SND1-214ENST00000489417 PIK3C2GO75747 1445 aa29.48■■■□□ 2.31
SND1-214ENST00000489417 MYO3AQ8NEV4 1616 aa29.48■■■□□ 2.31
SND1-214ENST00000489417 USP47Q96K76 1375 aa29.47■■■□□ 2.31
SND1-214ENST00000489417 HIRIP3Q9BW71 556 aaPredicted RBP29.46■■■□□ 2.31
SND1-214ENST00000489417 RIMS2Q9UQ26 1411 aa29.46■■■□□ 2.31
SND1-214ENST00000489417 NUTM2DQ5VT03 806 aaPredicted RBP29.45■■■□□ 2.3
SND1-214ENST00000489417 PTPRMP28827 1452 aa29.44■■■□□ 2.3
SND1-214ENST00000489417 CFAP70Q5T0N1 1121 aa29.42■■■□□ 2.3
SND1-214ENST00000489417 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.39■■■□□ 2.3
SND1-214ENST00000489417 C14orf93Q9H972 538 aaKnown RBP29.39■■■□□ 2.3
SND1-214ENST00000489417 TMEM2Q9UHN6 1383 aa29.39■■■□□ 2.29
SND1-214ENST00000489417 CEP170BQ9Y4F5 1589 aaPredicted RBP29.38■■■□□ 2.29
SND1-214ENST00000489417 SETBP1Q9Y6X0 1596 aa29.38■■■□□ 2.29
SND1-214ENST00000489417 HDGFP51858 240 aaKnown RBP29.37■■■□□ 2.29
SND1-214ENST00000489417 IQGAP1P46940 1657 aa29.35■■■□□ 2.29
SND1-214ENST00000489417 ZNF142P52746 1687 aaPredicted RBP29.34■■■□□ 2.29
SND1-214ENST00000489417 SCAF11Q99590 1463 aaKnown RBP29.34■■■□□ 2.29
SND1-214ENST00000489417 SLIT1O75093 1534 aa29.32■■■□□ 2.28
SND1-214ENST00000489417 ADGRB1O14514 1584 aa29.31■■■□□ 2.28
SND1-214ENST00000489417 ARHGAP23Q9P227 1491 aa29.31■■■□□ 2.28
SND1-214ENST00000489417 THEMISQ8N1K5 641 aaPredicted RBP29.31■■■□□ 2.28
SND1-214ENST00000489417 SETD1BQ9UPS6 1966 aaKnown RBP29.29■■■□□ 2.28
SND1-214ENST00000489417 ST20-MTHFSA0A0A6YYL1 179 aa29.28■■■□□ 2.28
SND1-214ENST00000489417 ALKQ9UM73 1620 aa29.27■■■□□ 2.28
SND1-214ENST00000489417 EIF3AQ14152 1382 aaKnown RBP29.25■■■□□ 2.27
SND1-214ENST00000489417 ASXL1Q8IXJ9 1541 aa29.24■■■□□ 2.27
SND1-214ENST00000489417 SENP3Q9H4L4 574 aaPredicted RBP29.24■■■□□ 2.27
SND1-214ENST00000489417 EID1Q9Y6B2 187 aa29.24■■■□□ 2.27
SND1-214ENST00000489417 NRXN3Q9Y4C0 1643 aa29.24■■■□□ 2.27
SND1-214ENST00000489417 KDM4FA0A1W2PPD8 638 aa29.23■■■□□ 2.27
SND1-214ENST00000489417 DIEXFQ68CQ4 756 aaKnown RBP29.23■■■□□ 2.27
SND1-214ENST00000489417 TXNDC2Q86VQ3 553 aa29.23■■■□□ 2.27
SND1-214ENST00000489417 LTKP29376 864 aa29.22■■■□□ 2.27
SND1-214ENST00000489417 TMEM132EQ6IEE7 984 aa29.22■■■□□ 2.27
SND1-214ENST00000489417 PLEKHG1Q9ULL1 1385 aa29.21■■■□□ 2.27
SND1-214ENST00000489417 SETD1AO15047 1707 aaKnown RBP29.2■■■□□ 2.26
SND1-214ENST00000489417 POLR1AO95602 1720 aaPredicted RBP29.2■■■□□ 2.26
SND1-214ENST00000489417 WASHC2AQ641Q2 1341 aa29.2■■■□□ 2.26
SND1-214ENST00000489417 CCDC7Q96M83 1385 aa29.19■■■□□ 2.26
SND1-214ENST00000489417 C11orf95C9JLR9 678 aaPredicted RBP29.19■■■□□ 2.26
SND1-214ENST00000489417 TESK2Q96S53 571 aa29.15■■■□□ 2.26
SND1-214ENST00000489417 KIF7Q2M1P5 1343 aa29.14■■■□□ 2.26
SND1-214ENST00000489417 BCANQ96GW7 911 aa29.14■■■□□ 2.26
SND1-214ENST00000489417 TRAK1Q9UPV9 953 aa29.14■■■□□ 2.26
SND1-214ENST00000489417 YTHDC2Q9H6S0 1430 aaKnown RBP29.13■■■□□ 2.25
SND1-214ENST00000489417 ADAMTS13Q76LX8 1427 aa29.12■■■□□ 2.25
SND1-214ENST00000489417 DDX10Q13206 875 aaKnown RBP29.11■■■□□ 2.25
SND1-214ENST00000489417 ARHGEF28Q8N1W1 1705 aaKnown RBP29.11■■■□□ 2.25
SND1-214ENST00000489417 CENPJQ9HC77 1338 aaPredicted RBP29.09■■■□□ 2.25
SND1-214ENST00000489417 ANKLE2Q86XL3 938 aa29.09■■■□□ 2.25
SND1-214ENST00000489417 MED14O60244 1454 aa29.08■■■□□ 2.25
SND1-214ENST00000489417 METP08581 1390 aa29.08■■■□□ 2.25
SND1-214ENST00000489417 LRPPRCP42704 1394 aaKnown RBP29.08■■■□□ 2.25
SND1-214ENST00000489417 STK26Q9P289 416 aa29.08■■■□□ 2.25
SND1-214ENST00000489417 TMF1P82094 1093 aa29.07■■■□□ 2.24
SND1-214ENST00000489417 DIP2AQ14689 1571 aa29.06■■■□□ 2.24
SND1-214ENST00000489417 DISP3Q9P2K9 1392 aa29.05■■■□□ 2.24
SND1-214ENST00000489417 SBNO2Q9Y2G9 1366 aa29.05■■■□□ 2.24
SND1-214ENST00000489417 QRICH2Q9H0J4 1663 aa29.05■■■□□ 2.24
SND1-214ENST00000489417 DLC1Q96QB1 1528 aa29.05■■■□□ 2.24
SND1-214ENST00000489417 SLC24A1O60721 1099 aa29.04■■■□□ 2.24
SND1-214ENST00000489417 TBX22Q9Y458 520 aa29.03■■■□□ 2.24
SND1-214ENST00000489417 ABCC11Q96J66 1382 aa29.02■■■□□ 2.24
SND1-214ENST00000489417 POLR3GLQ9BT43 218 aa29.02■■■□□ 2.24
SND1-214ENST00000489417 SLC26A8Q96RN1 970 aa29.01■■■□□ 2.23
SND1-214ENST00000489417 KNDC1Q76NI1 1749 aa29.01■■■□□ 2.23
SND1-214ENST00000489417 TECPR2O15040 1411 aa28.98■■■□□ 2.23
SND1-214ENST00000489417 CDCA8Q53HL2 280 aa28.96■■■□□ 2.23
SND1-214ENST00000489417 CPS1P31327 1500 aa28.96■■■□□ 2.23
SND1-214ENST00000489417 NPHP4O75161 1426 aaPredicted RBP28.96■■■□□ 2.23
SND1-214ENST00000489417 PRAM1Q96QH2 718 aa28.95■■■□□ 2.23
SND1-214ENST00000489417 POGKQ9P215 609 aa28.95■■■□□ 2.23
SND1-214ENST00000489417 SIRT1Q96EB6 747 aa28.93■■■□□ 2.22
SND1-214ENST00000489417 PTPRUQ92729 1446 aa28.92■■■□□ 2.22
SND1-214ENST00000489417 FAM135BQ49AJ0 1406 aa28.92■■■□□ 2.22
SND1-214ENST00000489417 NCKAP5LQ9HCH0 1330 aa28.91■■■□□ 2.22
SND1-214ENST00000489417 LMTK3Q96Q04 1460 aa28.91■■■□□ 2.22
SND1-214ENST00000489417 PIK3R4Q99570 1358 aa28.91■■■□□ 2.22
SND1-214ENST00000489417 SAFB2Q14151 953 aaKnown RBP eCLIP28.9■■■□□ 2.22
SND1-214ENST00000489417 AEBP2Q6ZN18 517 aaPredicted RBP28.89■■■□□ 2.22
SND1-214ENST00000489417 PLEKHH1Q9ULM0 1364 aa28.88■■■□□ 2.21
SND1-214ENST00000489417 TULP4Q9NRJ4 1543 aa28.88■■■□□ 2.21
SND1-214ENST00000489417 WAPLQ7Z5K2 1190 aa28.86■■■□□ 2.21
SND1-214ENST00000489417 XRN1Q8IZH2 1706 aaKnown RBP28.86■■■□□ 2.21
SND1-214ENST00000489417 EVC2Q86UK5 1308 aa28.86■■■□□ 2.21
SND1-214ENST00000489417 AMOTL2Q9Y2J4 779 aa28.86■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms