RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 FAM187AA6NFU0 413 aa11.01□□□□□ -0.65
SMC4-220ENST00000488017 OSBPP22059 807 aa11□□□□□ -0.65
SMC4-220ENST00000488017 GDF9O60383 454 aa10.99□□□□□ -0.65
SMC4-220ENST00000488017 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
SMC4-220ENST00000488017 ANKLE1Q8NAG6 615 aa10.98□□□□□ -0.65
SMC4-220ENST00000488017 AAASQ9NRG9 546 aa10.98□□□□□ -0.65
SMC4-220ENST00000488017 ZNF697Q5TEC3 545 aa10.97□□□□□ -0.65
SMC4-220ENST00000488017 PRR14Q9BWN1 585 aa10.97□□□□□ -0.65
SMC4-220ENST00000488017 CDHR5Q9HBB8 845 aa10.97□□□□□ -0.65
SMC4-220ENST00000488017 STK17AQ9UEE5 414 aa10.97□□□□□ -0.65
SMC4-220ENST00000488017 ST8SIA5O15466 376 aa10.96□□□□□ -0.65
SMC4-220ENST00000488017 LIAT1Q6ZQX7 453 aa10.96□□□□□ -0.65
SMC4-220ENST00000488017 TTC13Q8NBP0 860 aa10.95□□□□□ -0.66
SMC4-220ENST00000488017 PCDHB3Q9Y5E6 796 aa10.95□□□□□ -0.66
SMC4-220ENST00000488017 TNFRSF10AO00220 468 aa10.93□□□□□ -0.66
SMC4-220ENST00000488017 SLC4A3P48751 1232 aa10.93□□□□□ -0.66
SMC4-220ENST00000488017 WFS1O76024 890 aa10.92□□□□□ -0.66
SMC4-220ENST00000488017 BLOC1S3Q6QNY0 202 aa10.92□□□□□ -0.66
SMC4-220ENST00000488017 PAXIP1Q6ZW49 1069 aaPredicted RBP10.92□□□□□ -0.66
SMC4-220ENST00000488017 CFAP44Q96MT7 982 aa10.92□□□□□ -0.66
SMC4-220ENST00000488017 CRIPAKQ8N1N5 446 aa10.9□□□□□ -0.66
SMC4-220ENST00000488017 NPDC1Q9NQX5 325 aaPredicted RBP10.9□□□□□ -0.66
SMC4-220ENST00000488017 PPEF1O14829 653 aaPredicted RBP10.89□□□□□ -0.67
SMC4-220ENST00000488017 WIPF1O43516 503 aa10.89□□□□□ -0.67
SMC4-220ENST00000488017 AMER1Q5JTC6 1135 aaPredicted RBP10.89□□□□□ -0.67
SMC4-220ENST00000488017 TLL1O43897 1013 aa10.88□□□□□ -0.67
SMC4-220ENST00000488017 S1PR4O95977 384 aa10.88□□□□□ -0.67
SMC4-220ENST00000488017 PADI6Q6TGC4 694 aa10.88□□□□□ -0.67
SMC4-220ENST00000488017 INSM1Q01101 510 aaPredicted RBP10.87□□□□□ -0.67
SMC4-220ENST00000488017 LMOD2Q6P5Q4 547 aa10.85□□□□□ -0.67
SMC4-220ENST00000488017 EYA1Q99502 592 aa10.85□□□□□ -0.67
SMC4-220ENST00000488017 NFX1Q12986 1120 aaKnown RBP10.84□□□□□ -0.67
SMC4-220ENST00000488017 DACH1Q9UI36 760 aa10.83□□□□□ -0.68
SMC4-220ENST00000488017 AVPP01185 164 aa10.82□□□□□ -0.68
SMC4-220ENST00000488017 PKD2L1Q9P0L9 805 aa10.82□□□□□ -0.68
SMC4-220ENST00000488017 GMPR2Q9P2T1 348 aaKnown RBP10.81□□□□□ -0.68
SMC4-220ENST00000488017 C11orf95C9JLR9 678 aaPredicted RBP10.8□□□□□ -0.68
SMC4-220ENST00000488017 ACTN4O43707 911 aaKnown RBP10.8□□□□□ -0.68
SMC4-220ENST00000488017 PLA2G2CQ5R387 149 aa10.8□□□□□ -0.68
SMC4-220ENST00000488017 LOC100996750A0A140TA64 210 aa10.79□□□□□ -0.68
SMC4-220ENST00000488017 ADH1BP00325 375 aa10.79□□□□□ -0.68
SMC4-220ENST00000488017 ARHGEF1Q92888 912 aaKnown RBP10.79□□□□□ -0.68
SMC4-220ENST00000488017 KRTAP4-6Q9BYQ5 205 aa10.79□□□□□ -0.68
SMC4-220ENST00000488017 FOXC1Q12948 553 aa10.77□□□□□ -0.69
SMC4-220ENST00000488017 AXIN1O15169 862 aa10.76□□□□□ -0.69
SMC4-220ENST00000488017 DNAJB2P25686 324 aa10.76□□□□□ -0.69
SMC4-220ENST00000488017 CTC1Q2NKJ3 1217 aa10.76□□□□□ -0.69
SMC4-220ENST00000488017 KMT5BQ4FZB7 885 aa10.76□□□□□ -0.69
SMC4-220ENST00000488017 SMCPP49901 116 aaPredicted RBP10.75□□□□□ -0.69
SMC4-220ENST00000488017 SLC6A16Q9GZN6 736 aa10.75□□□□□ -0.69
SMC4-220ENST00000488017 TOR4AQ9NXH8 423 aa10.75□□□□□ -0.69
SMC4-220ENST00000488017 PTGDRQ13258 359 aa10.74□□□□□ -0.69
SMC4-220ENST00000488017 RBM46Q8TBY0 533 aaKnown RBP10.74□□□□□ -0.69
SMC4-220ENST00000488017 MLLT3P42568 568 aaPredicted RBP10.73□□□□□ -0.69
SMC4-220ENST00000488017 RTN4Q9NQC3 1192 aaKnown RBP10.73□□□□□ -0.69
SMC4-220ENST00000488017 NR1I2O75469 434 aa10.72□□□□□ -0.69
SMC4-220ENST00000488017 TMEM134Q9H6X4 195 aa10.72□□□□□ -0.69
SMC4-220ENST00000488017 LCE2CQ5TA81 110 aa10.71□□□□□ -0.69
SMC4-220ENST00000488017 RPIAP49247 311 aa10.7□□□□□ -0.7
SMC4-220ENST00000488017 ADGRG1Q9Y653 693 aa10.7□□□□□ -0.7
SMC4-220ENST00000488017 CFHP08603 1231 aa10.69□□□□□ -0.7
SMC4-220ENST00000488017 TERTO14746 1132 aaKnown RBP10.68□□□□□ -0.7
SMC4-220ENST00000488017 CYP4X1Q8N118 509 aa10.68□□□□□ -0.7
SMC4-220ENST00000488017 KCNV2Q8TDN2 545 aa10.68□□□□□ -0.7
SMC4-220ENST00000488017 RCCD1A6NED2 376 aa10.66□□□□□ -0.7
SMC4-220ENST00000488017 SCUBE3Q8IX30 993 aa10.65□□□□□ -0.7
SMC4-220ENST00000488017 CD2BP2O95400 341 aaKnown RBP10.64□□□□□ -0.71
SMC4-220ENST00000488017 TSHZ2Q9NRE2 1034 aa10.64□□□□□ -0.71
SMC4-220ENST00000488017 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.63□□□□□ -0.71
SMC4-220ENST00000488017 NUTM2FA1L443 756 aa10.63□□□□□ -0.71
SMC4-220ENST00000488017 FAM181BA6NEQ2 426 aa10.62□□□□□ -0.71
SMC4-220ENST00000488017 FCHSD2O94868 740 aa10.62□□□□□ -0.71
SMC4-220ENST00000488017 SLC10A3P09131 477 aa10.62□□□□□ -0.71
SMC4-220ENST00000488017 SNRPBP14678 240 aaKnown RBP10.62□□□□□ -0.71
SMC4-220ENST00000488017 SPSB2Q99619 263 aa10.62□□□□□ -0.71
SMC4-220ENST00000488017 ATP13A2Q9NQ11 1180 aa10.61□□□□□ -0.71
SMC4-220ENST00000488017 P3H3Q8IVL6 736 aa10.6□□□□□ -0.71
SMC4-220ENST00000488017 TRIM47Q96LD4 638 aa10.59□□□□□ -0.71
SMC4-220ENST00000488017 SENP2Q9HC62 589 aa10.59□□□□□ -0.71
SMC4-220ENST00000488017 OATP04181 439 aa10.58□□□□□ -0.72
SMC4-220ENST00000488017 FAM161AQ3B820 660 aa10.58□□□□□ -0.72
SMC4-220ENST00000488017 TTC24A2A3L6 582 aaPredicted RBP10.57□□□□□ -0.72
SMC4-220ENST00000488017 RSPH4AQ5TD94 716 aa10.56□□□□□ -0.72
SMC4-220ENST00000488017 PXYLP1Q8TE99 480 aa10.56□□□□□ -0.72
SMC4-220ENST00000488017 FCF1Q9Y324 198 aaKnown RBP10.56□□□□□ -0.72
SMC4-220ENST00000488017 SMPD1P17405 629 aa10.54□□□□□ -0.72
SMC4-220ENST00000488017 PUS10Q3MIT2 529 aaKnown RBP10.54□□□□□ -0.72
SMC4-220ENST00000488017 HIC1Q14526 733 aa10.53□□□□□ -0.72
SMC4-220ENST00000488017 KIFC2Q96AC6 838 aa10.52□□□□□ -0.73
SMC4-220ENST00000488017 SEMA3EO15041 775 aa10.51□□□□□ -0.73
SMC4-220ENST00000488017 LORP23490 312 aaPredicted RBP10.51□□□□□ -0.73
SMC4-220ENST00000488017 SNIP1Q8TAD8 396 aaKnown RBP10.51□□□□□ -0.73
SMC4-220ENST00000488017 WNT7AO00755 349 aa10.5□□□□□ -0.73
SMC4-220ENST00000488017 METTL3Q86U44 580 aaKnown RBP10.5□□□□□ -0.73
SMC4-220ENST00000488017 ZSCAN1Q8NBB4 408 aa10.5□□□□□ -0.73
SMC4-220ENST00000488017 SLC16A10Q8TF71 515 aa10.5□□□□□ -0.73
SMC4-220ENST00000488017 THAP11Q96EK4 314 aa10.5□□□□□ -0.73
SMC4-220ENST00000488017 SUZ12Q15022 739 aaKnown RBP10.47□□□□□ -0.73
SMC4-220ENST00000488017 FAM160A2Q8N612 972 aaPredicted RBP10.47□□□□□ -0.73
SMC4-220ENST00000488017 ZBTB24O43167 697 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms