RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 COPS2P61201 443 aa11.84□□□□□ -0.51
SMC4-219ENST00000487747 GNPATO15228 680 aa11.83□□□□□ -0.52
SMC4-219ENST00000487747 NKX2-3Q8TAU0 364 aa11.83□□□□□ -0.52
SMC4-219ENST00000487747 METTL3Q86U44 580 aaKnown RBP11.82□□□□□ -0.52
SMC4-219ENST00000487747 SLC10A3P09131 477 aa11.81□□□□□ -0.52
SMC4-219ENST00000487747 NLRP7Q8WX94 980 aa11.8□□□□□ -0.52
SMC4-219ENST00000487747 OATP04181 439 aa11.79□□□□□ -0.52
SMC4-219ENST00000487747 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.78□□□□□ -0.52
SMC4-219ENST00000487747 SLC4A3P48751 1232 aa11.78□□□□□ -0.52
SMC4-219ENST00000487747 PPP1R18Q6NYC8 613 aa11.78□□□□□ -0.52
SMC4-219ENST00000487747 NECTIN2Q92692 538 aa11.78□□□□□ -0.52
SMC4-219ENST00000487747 BLOC1S3Q6QNY0 202 aa11.77□□□□□ -0.53
SMC4-219ENST00000487747 GPIHBP1Q8IV16 184 aa11.77□□□□□ -0.53
SMC4-219ENST00000487747 PHOX2BQ99453 314 aa11.77□□□□□ -0.53
SMC4-219ENST00000487747 IRX2Q9BZI1 471 aaPredicted RBP11.77□□□□□ -0.53
SMC4-219ENST00000487747 PCDHB3Q9Y5E6 796 aa11.76□□□□□ -0.53
SMC4-219ENST00000487747 CFHP08603 1231 aa11.75□□□□□ -0.53
SMC4-219ENST00000487747 ZPR1O75312 459 aa11.74□□□□□ -0.53
SMC4-219ENST00000487747 ACTN4O43707 911 aaKnown RBP11.72□□□□□ -0.53
SMC4-219ENST00000487747 TLL1O43897 1013 aa11.71□□□□□ -0.53
SMC4-219ENST00000487747 PRR14Q9BWN1 585 aa11.71□□□□□ -0.53
SMC4-219ENST00000487747 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.7□□□□□ -0.54
SMC4-219ENST00000487747 KMT5BQ4FZB7 885 aa11.69□□□□□ -0.54
SMC4-219ENST00000487747 PRKD2Q9BZL6 878 aa11.68□□□□□ -0.54
SMC4-219ENST00000487747 DAXXQ9UER7 740 aaPredicted RBP11.67□□□□□ -0.54
SMC4-219ENST00000487747 PUS10Q3MIT2 529 aaKnown RBP11.66□□□□□ -0.54
SMC4-219ENST00000487747 DDX11L8A8MPP1 907 aa11.65□□□□□ -0.54
SMC4-219ENST00000487747 RDH13Q8NBN7 331 aa11.63□□□□□ -0.55
SMC4-219ENST00000487747 RNF223E7ERA6 249 aa11.61□□□□□ -0.55
SMC4-219ENST00000487747 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.61□□□□□ -0.551e-6■■■■■ 406.9
SMC4-219ENST00000487747 SCUBE3Q8IX30 993 aa11.61□□□□□ -0.55
SMC4-219ENST00000487747 PPEF1O14829 653 aaPredicted RBP11.6□□□□□ -0.55
SMC4-219ENST00000487747 IRF6O14896 467 aa11.6□□□□□ -0.55
SMC4-219ENST00000487747 MAP2K5Q13163 448 aa11.6□□□□□ -0.55
SMC4-219ENST00000487747 EMID1Q96A84 441 aaPredicted RBP11.6□□□□□ -0.55
SMC4-219ENST00000487747 TULP1O00294 542 aaPredicted RBP11.59□□□□□ -0.55
SMC4-219ENST00000487747 S1PR4O95977 384 aa11.59□□□□□ -0.55
SMC4-219ENST00000487747 FUT2Q10981 343 aa11.59□□□□□ -0.55
SMC4-219ENST00000487747 RSPH4AQ5TD94 716 aa11.59□□□□□ -0.55
SMC4-219ENST00000487747 NR1I2O75469 434 aa11.58□□□□□ -0.56
SMC4-219ENST00000487747 GGCXP38435 758 aa11.58□□□□□ -0.56
SMC4-219ENST00000487747 TMUB1Q9BVT8 246 aa11.58□□□□□ -0.56
SMC4-219ENST00000487747 V9GY48 417 aaPredicted RBP11.58□□□□□ -0.56
SMC4-219ENST00000487747 GCGRP47871 477 aa11.57□□□□□ -0.56
SMC4-219ENST00000487747 ADH1BP00325 375 aa11.55□□□□□ -0.56
SMC4-219ENST00000487747 MORN1Q5T089 497 aa11.55□□□□□ -0.56
SMC4-219ENST00000487747 MINK1Q8N4C8 1332 aaPredicted RBP11.55□□□□□ -0.56
SMC4-219ENST00000487747 GFRA3O60609 400 aa11.54□□□□□ -0.56
SMC4-219ENST00000487747 CCDC102AQ96A19 550 aa11.54□□□□□ -0.56
SMC4-219ENST00000487747 MDM2Q00987 491 aaPredicted RBP11.53□□□□□ -0.56
SMC4-219ENST00000487747 LMOD2Q6P5Q4 547 aa11.53□□□□□ -0.56
SMC4-219ENST00000487747 Q6ZNB5 142 aa11.53□□□□□ -0.56
SMC4-219ENST00000487747 SULF1Q8IWU6 871 aa11.53□□□□□ -0.56
SMC4-219ENST00000487747 LCE2BO14633 110 aa11.52□□□□□ -0.57
SMC4-219ENST00000487747 ATP6V1AP38606 617 aa11.52□□□□□ -0.57
SMC4-219ENST00000487747 SLC27A5Q9Y2P5 690 aa11.52□□□□□ -0.57
SMC4-219ENST00000487747 PLA2G2CQ5R387 149 aa11.51□□□□□ -0.57
SMC4-219ENST00000487747 THAP11Q96EK4 314 aa11.51□□□□□ -0.57
SMC4-219ENST00000487747 SPSB2Q99619 263 aa11.51□□□□□ -0.57
SMC4-219ENST00000487747 SLC6A16Q9GZN6 736 aa11.51□□□□□ -0.57
SMC4-219ENST00000487747 CD46P15529 392 aa11.5□□□□□ -0.57
SMC4-219ENST00000487747 ANKLE1Q8NAG6 615 aa11.5□□□□□ -0.57
SMC4-219ENST00000487747 SLC19A1P41440 591 aa11.49□□□□□ -0.57
SMC4-219ENST00000487747 LIAT1Q6ZQX7 453 aa11.49□□□□□ -0.57
SMC4-219ENST00000487747 FAM160A2Q8N612 972 aaPredicted RBP11.47□□□□□ -0.57
SMC4-219ENST00000487747 TRIM67Q6ZTA4 783 aa11.46□□□□□ -0.57
SMC4-219ENST00000487747 REPIN1Q9BWE0 567 aaKnown RBP11.46□□□□□ -0.57
SMC4-219ENST00000487747 RNF19BQ6ZMZ0 732 aa11.45□□□□□ -0.58
SMC4-219ENST00000487747 HLA-CQ95604 372 aa11.45□□□□□ -0.58
SMC4-219ENST00000487747 PRDM9Q9NQV7 894 aa11.45□□□□□ -0.58
SMC4-219ENST00000487747 PDZRN3Q9UPQ7 1066 aa11.45□□□□□ -0.58
SMC4-219ENST00000487747 LAPTM4AQ15012 233 aa11.44□□□□□ -0.58
SMC4-219ENST00000487747 SPRYD7Q5W111 196 aa11.44□□□□□ -0.58
SMC4-219ENST00000487747 BRICD5Q6PL45 260 aa11.44□□□□□ -0.58
SMC4-219ENST00000487747 NRG2O14511 850 aaPredicted RBP11.43□□□□□ -0.58
SMC4-219ENST00000487747 ZC3H15Q8WU90 426 aaKnown RBP11.43□□□□□ -0.58
SMC4-219ENST00000487747 ZMYND10O75800 440 aa11.42□□□□□ -0.58
SMC4-219ENST00000487747 FMNL1O95466 1100 aaPredicted RBP11.42□□□□□ -0.58
SMC4-219ENST00000487747 BARGINQ6ZT62 677 aa11.42□□□□□ -0.58
SMC4-219ENST00000487747 KDM4AO75164 1064 aa11.41□□□□□ -0.58
SMC4-219ENST00000487747 KRI1Q8N9T8 703 aaKnown RBP11.41□□□□□ -0.58
SMC4-219ENST00000487747 GPCPD1Q9NPB8 672 aa11.41□□□□□ -0.58
SMC4-219ENST00000487747 FAM217BQ9NTX9 383 aaPredicted RBP11.41□□□□□ -0.58
SMC4-219ENST00000487747 ZNF598Q86UK7 904 aaKnown RBP11.4□□□□□ -0.58
SMC4-219ENST00000487747 SALL2Q9Y467 1007 aaPredicted RBP11.4□□□□□ -0.58
SMC4-219ENST00000487747 CLCN1P35523 988 aa11.39□□□□□ -0.59
SMC4-219ENST00000487747 FCF1Q9Y324 198 aaKnown RBP11.39□□□□□ -0.59
SMC4-219ENST00000487747 GUCA2AQ02747 115 aa11.38□□□□□ -0.59
SMC4-219ENST00000487747 ZNF697Q5TEC3 545 aa11.38□□□□□ -0.59
SMC4-219ENST00000487747 TRAF7Q6Q0C0 670 aa11.38□□□□□ -0.59
SMC4-219ENST00000487747 GRIPAP1Q4V328 841 aa11.37□□□□□ -0.59
SMC4-219ENST00000487747 HOXA2O43364 376 aa11.35□□□□□ -0.59
SMC4-219ENST00000487747 TNFRSF10AO00220 468 aa11.34□□□□□ -0.59
SMC4-219ENST00000487747 GDF9O60383 454 aa11.34□□□□□ -0.59
SMC4-219ENST00000487747 MSS51Q4VC12 460 aa11.34□□□□□ -0.59
SMC4-219ENST00000487747 SSTR3P32745 418 aaPredicted RBP11.32□□□□□ -0.6
SMC4-219ENST00000487747 USP46P62068 366 aa11.32□□□□□ -0.6
SMC4-219ENST00000487747 SYMPKQ92797 1274 aaKnown RBP11.32□□□□□ -0.6
SMC4-219ENST00000487747 Q3C1V9 767 aa11.31□□□□□ -0.6
SMC4-219ENST00000487747 PRR20EP86478 221 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms