RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PDE4AP27815 886 aa13.89□□□□□ -0.19
HDAC6-228ENST00000486227 GSE1Q14687 1217 aa13.88□□□□□ -0.19
HDAC6-228ENST00000486227 HSP90AB1P08238 724 aaKnown RBP13.88□□□□□ -0.19
HDAC6-228ENST00000486227 NCLP19338 710 aaKnown RBP13.88□□□□□ -0.19
HDAC6-228ENST00000486227 RSPH6AQ9H0K4 717 aa13.88□□□□□ -0.19
HDAC6-228ENST00000486227 THOC2Q8NI27 1593 aaKnown RBP13.87□□□□□ -0.19
HDAC6-228ENST00000486227 SLC12A5Q9H2X9 1139 aa13.87□□□□□ -0.19
HDAC6-228ENST00000486227 C11orf95C9JLR9 678 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-228ENST00000486227 SLC4A10Q6U841 1118 aa13.87□□□□□ -0.19
HDAC6-228ENST00000486227 PTPRKQ15262 1439 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 ATF3P18847 181 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 EVA1CP58658 441 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 COG6Q9Y2V7 657 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 PPP2R1AP30153 589 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 MTHFSP49914 203 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 SPRYD3Q8NCJ5 442 aa13.86□□□□□ -0.19
HDAC6-228ENST00000486227 RUNDC1Q96C34 613 aa13.85□□□□□ -0.19
HDAC6-228ENST00000486227 PSME1Q06323 249 aa13.85□□□□□ -0.19
HDAC6-228ENST00000486227 RIPK4P57078 832 aa13.85□□□□□ -0.19
HDAC6-228ENST00000486227 CDCA7LQ96GN5 454 aa13.85□□□□□ -0.19
HDAC6-228ENST00000486227 PRAM1Q96QH2 718 aa13.85□□□□□ -0.19
HDAC6-228ENST00000486227 SLC52A1Q9NWF4 448 aa13.84□□□□□ -0.19
HDAC6-228ENST00000486227 KCNJ4P48050 445 aa13.84□□□□□ -0.19
HDAC6-228ENST00000486227 TPRNQ4KMQ1 711 aa13.84□□□□□ -0.19
HDAC6-228ENST00000486227 MSH5O43196 834 aa13.84□□□□□ -0.19
HDAC6-228ENST00000486227 KIF14Q15058 1648 aa13.84□□□□□ -0.19
HDAC6-228ENST00000486227 HSCBQ8IWL3 235 aa13.83□□□□□ -0.19
HDAC6-228ENST00000486227 NGEFQ8N5V2 710 aa13.83□□□□□ -0.19
HDAC6-228ENST00000486227 GPATCH8Q9UKJ3 1502 aaKnown RBP13.83□□□□□ -0.2
HDAC6-228ENST00000486227 ZKSCAN2Q63HK3 967 aa13.83□□□□□ -0.2
HDAC6-228ENST00000486227 PNISRQ8TF01 805 aaKnown RBP13.83□□□□□ -0.2
HDAC6-228ENST00000486227 TXNDC2Q86VQ3 553 aa13.82□□□□□ -0.2
HDAC6-228ENST00000486227 ERBINQ96RT1 1412 aa13.82□□□□□ -0.2
HDAC6-228ENST00000486227 TMX4Q9H1E5 349 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-228ENST00000486227 CD109Q6YHK3 1445 aa13.82□□□□□ -0.2
HDAC6-228ENST00000486227 HMOX1P09601 288 aa13.82□□□□□ -0.2
HDAC6-228ENST00000486227 THEMISQ8N1K5 641 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-228ENST00000486227 CENPQQ7L2Z9 268 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-228ENST00000486227 NUP153P49790 1475 aaKnown RBP13.8□□□□□ -0.2
HDAC6-228ENST00000486227 MEX3CQ5U5Q3 659 aaKnown RBP13.8□□□□□ -0.2
HDAC6-228ENST00000486227 ATP10BO94823 1461 aa13.8□□□□□ -0.2
HDAC6-228ENST00000486227 PRKCSHP14314 528 aaPredicted RBP13.79□□□□□ -0.2
HDAC6-228ENST00000486227 POGZQ7Z3K3 1410 aa13.79□□□□□ -0.2
HDAC6-228ENST00000486227 MFAP1P55081 439 aaKnown RBP13.79□□□□□ -0.2
HDAC6-228ENST00000486227 TCP11L2Q8N4U5 519 aa13.79□□□□□ -0.2
HDAC6-228ENST00000486227 ADGRL1O94910 1474 aa13.78□□□□□ -0.2
HDAC6-228ENST00000486227 FGD1P98174 961 aa13.78□□□□□ -0.2
HDAC6-228ENST00000486227 ANO8Q9HCE9 1232 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-228ENST00000486227 SLKQ9H2G2 1235 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-228ENST00000486227 UGGT2Q9NYU1 1516 aa13.77□□□□□ -0.2
HDAC6-228ENST00000486227 HMMRO75330 724 aa13.77□□□□□ -0.2
HDAC6-228ENST00000486227 HDAC5Q9UQL6 1122 aa13.77□□□□□ -0.21
HDAC6-228ENST00000486227 PROSER2Q86WR7 435 aaPredicted RBP13.77□□□□□ -0.21
HDAC6-228ENST00000486227 RPRD2Q5VT52 1461 aaKnown RBP13.77□□□□□ -0.21
HDAC6-228ENST00000486227 GOLGA6L3A6NEY3 463 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 CABP1Q9NZU7 370 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 RPGRIP1LQ68CZ1 1315 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 C1orf141Q5JVX7 400 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 MCCP23508 829 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 CDK19Q9BWU1 502 aa13.76□□□□□ -0.21
HDAC6-228ENST00000486227 RAPGEF6Q8TEU7 1601 aa13.75□□□□□ -0.21
HDAC6-228ENST00000486227 GTF2E1P29083 439 aaPredicted RBP13.75□□□□□ -0.21
HDAC6-228ENST00000486227 FAM161AQ3B820 660 aa13.75□□□□□ -0.21
HDAC6-228ENST00000486227 DZIP1LQ8IYY4 767 aaKnown RBP13.75□□□□□ -0.21
HDAC6-228ENST00000486227 TAOK2Q9UL54 1235 aa13.75□□□□□ -0.21
HDAC6-228ENST00000486227 PTMAP06454 111 aaKnown RBP13.74□□□□□ -0.21
HDAC6-228ENST00000486227 TEFQ10587 303 aa13.74□□□□□ -0.21
HDAC6-228ENST00000486227 NLRP6P59044 892 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 NAP1L2Q9ULW6 460 aaPredicted RBP13.73□□□□□ -0.21
HDAC6-228ENST00000486227 MAPKBP1O60336 1514 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 PANK1Q8TE04 598 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 SLC26A8Q96RN1 970 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 ADAMTS12P58397 1594 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 MSNP26038 577 aaKnown RBP13.73□□□□□ -0.21
HDAC6-228ENST00000486227 ANKRD45Q5TZF3 282 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 ADGRF5Q8IZF2 1346 aa13.73□□□□□ -0.21
HDAC6-228ENST00000486227 KIAA1211Q6ZU35 1233 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 ANKLE2Q86XL3 938 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 IL27Q8NEV9 243 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 NECTIN2Q92692 538 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 FANCAO15360 1455 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 TRIM6-TRIM34B2RNG4 842 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 TAF7LQ5H9L4 462 aa13.72□□□□□ -0.21
HDAC6-228ENST00000486227 DDX19BQ9UMR2 479 aa13.71□□□□□ -0.21
HDAC6-228ENST00000486227 CTTNBP2Q8WZ74 1663 aa13.71□□□□□ -0.21
HDAC6-228ENST00000486227 SLC4A3P48751 1232 aa13.71□□□□□ -0.21
HDAC6-228ENST00000486227 GNAI1P63096 354 aa13.71□□□□□ -0.22
HDAC6-228ENST00000486227 PRKAR2BP31323 418 aa13.71□□□□□ -0.22
HDAC6-228ENST00000486227 HSP90AA2PQ14568 343 aaPredicted RBP13.71□□□□□ -0.22
HDAC6-228ENST00000486227 DNTTIP2Q5QJE6 756 aaKnown RBP13.71□□□□□ -0.22
HDAC6-228ENST00000486227 GZF1Q9H116 711 aaPredicted RBP13.71□□□□□ -0.22
HDAC6-228ENST00000486227 CHMP3Q9Y3E7 222 aa13.71□□□□□ -0.22
HDAC6-228ENST00000486227 EIF2S2P20042 333 aaKnown RBP13.7□□□□□ -0.22
HDAC6-228ENST00000486227 PTMSP20962 102 aa13.7□□□□□ -0.22
HDAC6-228ENST00000486227 KIF21AQ7Z4S6 1674 aa13.7□□□□□ -0.22
HDAC6-228ENST00000486227 IDI1Q13907 227 aa13.7□□□□□ -0.22
HDAC6-228ENST00000486227 NFKBIBQ15653 356 aa13.69□□□□□ -0.22
HDAC6-228ENST00000486227 FBXO31Q5XUX0 539 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms