RNA–Protein interactions for RNA: ENST00000484275.1

SCAF11-207, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-207ENST00000484275 VSIG10Q8N0Z9 540 aa12.29□□□□□ -0.44
SCAF11-207ENST00000484275 NECTIN2Q92692 538 aa12.29□□□□□ -0.44
SCAF11-207ENST00000484275 GNPATO15228 680 aa12.28□□□□□ -0.44
SCAF11-207ENST00000484275 NKX2-3Q8TAU0 364 aa12.28□□□□□ -0.44
SCAF11-207ENST00000484275 METTL3Q86U44 580 aaKnown RBP12.27□□□□□ -0.45
SCAF11-207ENST00000484275 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.26□□□□□ -0.45
SCAF11-207ENST00000484275 OATP04181 439 aa12.26□□□□□ -0.45
SCAF11-207ENST00000484275 SLC10A3P09131 477 aa12.26□□□□□ -0.45
SCAF11-207ENST00000484275 SLC4A3P48751 1232 aa12.26□□□□□ -0.45
SCAF11-207ENST00000484275 PPP1R18Q6NYC8 613 aa12.25□□□□□ -0.45
SCAF11-207ENST00000484275 IRX2Q9BZI1 471 aaPredicted RBP12.23□□□□□ -0.45
SCAF11-207ENST00000484275 PCDHB3Q9Y5E6 796 aa12.23□□□□□ -0.45
SCAF11-207ENST00000484275 BLOC1S3Q6QNY0 202 aa12.22□□□□□ -0.45
SCAF11-207ENST00000484275 ZPR1O75312 459 aa12.21□□□□□ -0.45
SCAF11-207ENST00000484275 CFHP08603 1231 aa12.21□□□□□ -0.45
SCAF11-207ENST00000484275 GPIHBP1Q8IV16 184 aa12.21□□□□□ -0.45
SCAF11-207ENST00000484275 NLRP7Q8WX94 980 aa12.21□□□□□ -0.45
SCAF11-207ENST00000484275 ACTN4O43707 911 aaKnown RBP12.2□□□□□ -0.46
SCAF11-207ENST00000484275 PHOX2BQ99453 314 aa12.2□□□□□ -0.46
SCAF11-207ENST00000484275 PRR14Q9BWN1 585 aa12.2□□□□□ -0.46
SCAF11-207ENST00000484275 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.18□□□□□ -0.46
SCAF11-207ENST00000484275 TLL1O43897 1013 aa12.16□□□□□ -0.46
SCAF11-207ENST00000484275 KMT5BQ4FZB7 885 aa12.16□□□□□ -0.46
SCAF11-207ENST00000484275 PRKD2Q9BZL6 878 aa12.15□□□□□ -0.46
SCAF11-207ENST00000484275 DAXXQ9UER7 740 aaPredicted RBP12.13□□□□□ -0.47
SCAF11-207ENST00000484275 PUS10Q3MIT2 529 aaKnown RBP12.09□□□□□ -0.47
SCAF11-207ENST00000484275 DDX11L8A8MPP1 907 aa12.08□□□□□ -0.48
SCAF11-207ENST00000484275 RNF223E7ERA6 249 aa12.07□□□□□ -0.48
SCAF11-207ENST00000484275 GGCXP38435 758 aa12.07□□□□□ -0.48
SCAF11-207ENST00000484275 RDH13Q8NBN7 331 aa12.07□□□□□ -0.48
SCAF11-207ENST00000484275 TMUB1Q9BVT8 246 aa12.07□□□□□ -0.48
SCAF11-207ENST00000484275 V9GY48 417 aaPredicted RBP12.07□□□□□ -0.48
SCAF11-207ENST00000484275 MAP2K5Q13163 448 aa12.06□□□□□ -0.48
SCAF11-207ENST00000484275 SCUBE3Q8IX30 993 aa12.06□□□□□ -0.48
SCAF11-207ENST00000484275 EMID1Q96A84 441 aaPredicted RBP12.06□□□□□ -0.48
SCAF11-207ENST00000484275 S1PR4O95977 384 aa12.05□□□□□ -0.48
SCAF11-207ENST00000484275 RSPH4AQ5TD94 716 aa12.05□□□□□ -0.48
SCAF11-207ENST00000484275 PPEF1O14829 653 aaPredicted RBP12.04□□□□□ -0.48
SCAF11-207ENST00000484275 NR1I2O75469 434 aa12.04□□□□□ -0.48
SCAF11-207ENST00000484275 TULP1O00294 542 aaPredicted RBP12.03□□□□□ -0.48
SCAF11-207ENST00000484275 IRF6O14896 467 aa12.03□□□□□ -0.48
SCAF11-207ENST00000484275 ADH1BP00325 375 aa12.03□□□□□ -0.48
SCAF11-207ENST00000484275 FUT2Q10981 343 aa12.03□□□□□ -0.48
SCAF11-207ENST00000484275 GFRA3O60609 400 aa12.02□□□□□ -0.49
SCAF11-207ENST00000484275 GCGRP47871 477 aa12.02□□□□□ -0.49
SCAF11-207ENST00000484275 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.02□□□□□ -0.49
SCAF11-207ENST00000484275 MORN1Q5T089 497 aa12.01□□□□□ -0.49
SCAF11-207ENST00000484275 Q6ZNB5 142 aa12.01□□□□□ -0.49
SCAF11-207ENST00000484275 LCE2BO14633 110 aa12□□□□□ -0.49
SCAF11-207ENST00000484275 SULF1Q8IWU6 871 aa12□□□□□ -0.49
SCAF11-207ENST00000484275 ANKLE1Q8NAG6 615 aa11.98□□□□□ -0.49
SCAF11-207ENST00000484275 MINK1Q8N4C8 1332 aaPredicted RBP11.97□□□□□ -0.49
SCAF11-207ENST00000484275 ATP6V1AP38606 617 aa11.97□□□□□ -0.49
SCAF11-207ENST00000484275 CCDC102AQ96A19 550 aa11.97□□□□□ -0.49
SCAF11-207ENST00000484275 THAP11Q96EK4 314 aa11.97□□□□□ -0.49
SCAF11-207ENST00000484275 SLC6A16Q9GZN6 736 aa11.97□□□□□ -0.49
SCAF11-207ENST00000484275 SLC27A5Q9Y2P5 690 aa11.97□□□□□ -0.49
SCAF11-207ENST00000484275 LAPTM4AQ15012 233 aa11.96□□□□□ -0.49
SCAF11-207ENST00000484275 PLA2G2CQ5R387 149 aa11.96□□□□□ -0.49
SCAF11-207ENST00000484275 SPSB2Q99619 263 aa11.96□□□□□ -0.49
SCAF11-207ENST00000484275 SLC19A1P41440 591 aa11.95□□□□□ -0.5
SCAF11-207ENST00000484275 MDM2Q00987 491 aaPredicted RBP11.95□□□□□ -0.5
SCAF11-207ENST00000484275 CD46P15529 392 aa11.94□□□□□ -0.5
SCAF11-207ENST00000484275 LIAT1Q6ZQX7 453 aa11.94□□□□□ -0.5
SCAF11-207ENST00000484275 NRG2O14511 850 aaPredicted RBP11.93□□□□□ -0.5
SCAF11-207ENST00000484275 LMOD2Q6P5Q4 547 aa11.93□□□□□ -0.5
SCAF11-207ENST00000484275 TRIM67Q6ZTA4 783 aa11.93□□□□□ -0.5
SCAF11-207ENST00000484275 SPRYD7Q5W111 196 aa11.92□□□□□ -0.5
SCAF11-207ENST00000484275 PDZRN3Q9UPQ7 1066 aa11.92□□□□□ -0.5
SCAF11-207ENST00000484275 FAM160A2Q8N612 972 aaPredicted RBP11.91□□□□□ -0.5
SCAF11-207ENST00000484275 BRICD5Q6PL45 260 aa11.89□□□□□ -0.51
SCAF11-207ENST00000484275 RNF19BQ6ZMZ0 732 aa11.89□□□□□ -0.51
SCAF11-207ENST00000484275 PRDM9Q9NQV7 894 aa11.88□□□□□ -0.51
SCAF11-207ENST00000484275 FMNL1O95466 1100 aaPredicted RBP11.87□□□□□ -0.51
SCAF11-207ENST00000484275 ZNF598Q86UK7 904 aaKnown RBP11.87□□□□□ -0.51
SCAF11-207ENST00000484275 SALL2Q9Y467 1007 aaPredicted RBP11.87□□□□□ -0.51
SCAF11-207ENST00000484275 HLA-CQ95604 372 aa11.86□□□□□ -0.51
SCAF11-207ENST00000484275 REPIN1Q9BWE0 567 aaKnown RBP11.86□□□□□ -0.51
SCAF11-207ENST00000484275 KDM4AO75164 1064 aa11.85□□□□□ -0.51
SCAF11-207ENST00000484275 TRAF7Q6Q0C0 670 aa11.85□□□□□ -0.51
SCAF11-207ENST00000484275 GPCPD1Q9NPB8 672 aa11.85□□□□□ -0.51
SCAF11-207ENST00000484275 BARGINQ6ZT62 677 aa11.84□□□□□ -0.51
SCAF11-207ENST00000484275 FAM217BQ9NTX9 383 aaPredicted RBP11.84□□□□□ -0.51
SCAF11-207ENST00000484275 ZMYND10O75800 440 aa11.83□□□□□ -0.52
SCAF11-207ENST00000484275 GRIPAP1Q4V328 841 aa11.83□□□□□ -0.52
SCAF11-207ENST00000484275 ZNF697Q5TEC3 545 aa11.83□□□□□ -0.52
SCAF11-207ENST00000484275 ZC3H15Q8WU90 426 aaKnown RBP11.83□□□□□ -0.52
SCAF11-207ENST00000484275 FCF1Q9Y324 198 aaKnown RBP11.83□□□□□ -0.52
SCAF11-207ENST00000484275 CLCN1P35523 988 aa11.82□□□□□ -0.52
SCAF11-207ENST00000484275 GDF9O60383 454 aa11.81□□□□□ -0.52
SCAF11-207ENST00000484275 MSS51Q4VC12 460 aa11.81□□□□□ -0.52
SCAF11-207ENST00000484275 HOXA2O43364 376 aa11.8□□□□□ -0.52
SCAF11-207ENST00000484275 KRI1Q8N9T8 703 aaKnown RBP11.8□□□□□ -0.52
SCAF11-207ENST00000484275 PRR20EP86478 221 aa11.79□□□□□ -0.52
SCAF11-207ENST00000484275 PRR20CP86479 221 aa11.79□□□□□ -0.52
SCAF11-207ENST00000484275 PRR20DP86480 221 aa11.79□□□□□ -0.52
SCAF11-207ENST00000484275 PRR20BP86481 221 aa11.79□□□□□ -0.52
SCAF11-207ENST00000484275 PRR20AP86496 221 aa11.79□□□□□ -0.52
SCAF11-207ENST00000484275 GUCA2AQ02747 115 aa11.79□□□□□ -0.52
SCAF11-207ENST00000484275 TNFRSF10AO00220 468 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms