RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 LMTK2Q8IWU2 1503 aa20.19■□□□□ 0.82
SMAD9-204ENST00000483941 NEUROD1Q13562 356 aa20.17■□□□□ 0.82
SMAD9-204ENST00000483941 SLIT1O75093 1534 aa20.17■□□□□ 0.82
SMAD9-204ENST00000483941 RGS17Q9UGC6 210 aaPredicted RBP20.16■□□□□ 0.82
SMAD9-204ENST00000483941 ARHGAP23Q9P227 1491 aa20.16■□□□□ 0.82
SMAD9-204ENST00000483941 FOXD1Q16676 465 aa20.15■□□□□ 0.82
SMAD9-204ENST00000483941 TET3O43151 1660 aa20.14■□□□□ 0.81
SMAD9-204ENST00000483941 RPRD2Q5VT52 1461 aaKnown RBP20.14■□□□□ 0.81
SMAD9-204ENST00000483941 TONSLQ96HA7 1378 aa20.14■□□□□ 0.81
SMAD9-204ENST00000483941 SIN3AQ96ST3 1273 aa20.14■□□□□ 0.81
SMAD9-204ENST00000483941 ARHGAP31Q2M1Z3 1444 aa20.1■□□□□ 0.81
SMAD9-204ENST00000483941 ROBO1Q9Y6N7 1651 aa20.1■□□□□ 0.81
SMAD9-204ENST00000483941 PIK3C2BO00750 1634 aa20.1■□□□□ 0.81
SMAD9-204ENST00000483941 CCDC144AA2RUR9 1427 aa20.1■□□□□ 0.81
SMAD9-204ENST00000483941 EFCAB6Q5THR3 1501 aa20.09■□□□□ 0.81
SMAD9-204ENST00000483941 FAM135BQ49AJ0 1406 aa20.09■□□□□ 0.81
SMAD9-204ENST00000483941 SETD1AO15047 1707 aaKnown RBP20.08■□□□□ 0.81
SMAD9-204ENST00000483941 LTKP29376 864 aa20.08■□□□□ 0.81
SMAD9-204ENST00000483941 TXNDC2Q86VQ3 553 aa20.07■□□□□ 0.8
SMAD9-204ENST00000483941 KDM5AP29375 1690 aaKnown RBP20.07■□□□□ 0.8
SMAD9-204ENST00000483941 EID1Q9Y6B2 187 aa20.04■□□□□ 0.8
SMAD9-204ENST00000483941 POTEAQ6S8J7 498 aa20.03■□□□□ 0.8
SMAD9-204ENST00000483941 E9PCH4 1651 aa20.03■□□□□ 0.8
SMAD9-204ENST00000483941 TMEM94Q12767 1356 aa20.02■□□□□ 0.8
SMAD9-204ENST00000483941 TRPM2O94759 1503 aa20.02■□□□□ 0.79
SMAD9-204ENST00000483941 TMEM2Q9UHN6 1383 aa20.01■□□□□ 0.79
SMAD9-204ENST00000483941 NWD1Q149M9 1564 aa20■□□□□ 0.79
SMAD9-204ENST00000483941 PHLPP1O60346 1717 aa20■□□□□ 0.79
SMAD9-204ENST00000483941 STAC3Q96MF2 364 aa20■□□□□ 0.79
SMAD9-204ENST00000483941 SLC52A1Q9NWF4 448 aa20■□□□□ 0.79
SMAD9-204ENST00000483941 PPP1R15AO75807 674 aaPredicted RBP19.99■□□□□ 0.79
SMAD9-204ENST00000483941 NKTRP30414 1462 aaKnown RBP19.99■□□□□ 0.79
SMAD9-204ENST00000483941 SPHKAPQ2M3C7 1700 aa19.97■□□□□ 0.79
SMAD9-204ENST00000483941 NOS1P29475 1434 aa19.96■□□□□ 0.79
SMAD9-204ENST00000483941 L3MBTL2Q969R5 705 aa19.96■□□□□ 0.79
SMAD9-204ENST00000483941 ADGRB3O60242 1522 aa19.95■□□□□ 0.78
SMAD9-204ENST00000483941 KCNA6P17658 529 aa19.94■□□□□ 0.78
SMAD9-204ENST00000483941 STAG3Q9UJ98 1225 aa19.94■□□□□ 0.78
SMAD9-204ENST00000483941 PROSER2Q86WR7 435 aaPredicted RBP19.91■□□□□ 0.78
SMAD9-204ENST00000483941 MSH6P52701 1360 aa19.91■□□□□ 0.78
SMAD9-204ENST00000483941 COL16A1Q07092 1604 aaPredicted RBP19.91■□□□□ 0.78
SMAD9-204ENST00000483941 JCADQ9P266 1359 aa19.9■□□□□ 0.78
SMAD9-204ENST00000483941 RBM33Q96EV2 1170 aaKnown RBP19.89■□□□□ 0.77
SMAD9-204ENST00000483941 SLC26A8Q96RN1 970 aa19.89■□□□□ 0.77
SMAD9-204ENST00000483941 CHD2O14647 1828 aaKnown RBP19.88■□□□□ 0.77
SMAD9-204ENST00000483941 RPGRIP1LQ68CZ1 1315 aa19.88■□□□□ 0.77
SMAD9-204ENST00000483941 RGL3Q3MIN7 710 aa19.88■□□□□ 0.77
SMAD9-204ENST00000483941 DCAF11Q8TEB1 546 aa19.88■□□□□ 0.77
SMAD9-204ENST00000483941 SPATA31E1Q6ZUB1 1445 aa19.87■□□□□ 0.77
SMAD9-204ENST00000483941 MYO5BQ9ULV0 1848 aa19.87■□□□□ 0.77
SMAD9-204ENST00000483941 IDI1Q13907 227 aa19.86■□□□□ 0.77
SMAD9-204ENST00000483941 CLTCL1P53675 1640 aa19.86■□□□□ 0.77
SMAD9-204ENST00000483941 CHGAP10645 457 aaKnown RBP19.84■□□□□ 0.77
SMAD9-204ENST00000483941 LRP6O75581 1613 aa19.84■□□□□ 0.77
SMAD9-204ENST00000483941 ZNF326Q5BKZ1 582 aaKnown RBP19.83■□□□□ 0.77
SMAD9-204ENST00000483941 SHPRHQ149N8 1683 aa19.83■□□□□ 0.76
SMAD9-204ENST00000483941 KIF1BO60333 1816 aa19.83■□□□□ 0.76
SMAD9-204ENST00000483941 SLAIN2Q9P270 581 aa19.82■□□□□ 0.76
SMAD9-204ENST00000483941 KDM2AQ9Y2K7 1162 aa19.81■□□□□ 0.76
SMAD9-204ENST00000483941 HDGFP51858 240 aaKnown RBP19.8■□□□□ 0.76
SMAD9-204ENST00000483941 BCANQ96GW7 911 aa19.8■□□□□ 0.76
SMAD9-204ENST00000483941 AHDC1Q5TGY3 1603 aaPredicted RBP19.8■□□□□ 0.76
SMAD9-204ENST00000483941 ZFYVE9O95405 1425 aa19.79■□□□□ 0.76
SMAD9-204ENST00000483941 VGFO15240 615 aaPredicted RBP19.78■□□□□ 0.76
SMAD9-204ENST00000483941 PLEKHG1Q9ULL1 1385 aa19.78■□□□□ 0.76
SMAD9-204ENST00000483941 SPATA31A6Q5VVP1 1343 aa19.77■□□□□ 0.76
SMAD9-204ENST00000483941 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.77■□□□□ 0.76
SMAD9-204ENST00000483941 MEX3CQ5U5Q3 659 aaKnown RBP19.77■□□□□ 0.76
SMAD9-204ENST00000483941 TMEM131LA2VDJ0 1609 aa19.76■□□□□ 0.75
SMAD9-204ENST00000483941 ZNF772Q68DY9 489 aaPredicted RBP19.75■□□□□ 0.75
SMAD9-204ENST00000483941 UPF1Q92900 1129 aaKnown RBP eCLIP19.75■□□□□ 0.75
SMAD9-204ENST00000483941 NCOA3Q9Y6Q9 1424 aa19.75■□□□□ 0.75
SMAD9-204ENST00000483941 DIP2AQ14689 1571 aa19.74■□□□□ 0.75
SMAD9-204ENST00000483941 MYOM2P54296 1465 aa19.74■□□□□ 0.75
SMAD9-204ENST00000483941 PRAG1Q86YV5 1406 aa19.74■□□□□ 0.75
SMAD9-204ENST00000483941 RIMS2Q9UQ26 1411 aa19.74■□□□□ 0.75
SMAD9-204ENST00000483941 NBPF8Q3BBV2 869 aa19.73■□□□□ 0.75
SMAD9-204ENST00000483941 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.73■□□□□ 0.75
SMAD9-204ENST00000483941 SRCAPQ6ZRS2 3230 aa19.72■□□□□ 0.75
SMAD9-204ENST00000483941 ZNF316A6NFI3 1004 aaPredicted RBP19.7■□□□□ 0.74
SMAD9-204ENST00000483941 EIF4G2P78344 907 aaKnown RBP eCLIP19.7■□□□□ 0.74
SMAD9-204ENST00000483941 C14orf37Q86TY3 774 aa19.7■□□□□ 0.74
SMAD9-204ENST00000483941 CDK12Q9NYV4 1490 aaPredicted RBP19.7■□□□□ 0.74
SMAD9-204ENST00000483941 RALGAPBQ86X10 1494 aa19.69■□□□□ 0.74
SMAD9-204ENST00000483941 ROCK2O75116 1388 aaKnown RBP19.68■□□□□ 0.74
SMAD9-204ENST00000483941 CADPS2Q86UW7 1296 aa19.67■□□□□ 0.74
SMAD9-204ENST00000483941 CARD11Q9BXL7 1154 aa19.66■□□□□ 0.74
SMAD9-204ENST00000483941 TBX22Q9Y458 520 aa19.66■□□□□ 0.74
SMAD9-204ENST00000483941 ADAMTS13Q76LX8 1427 aa19.66■□□□□ 0.74
SMAD9-204ENST00000483941 ATF3P18847 181 aa19.65■□□□□ 0.74
SMAD9-204ENST00000483941 NRXN1Q9ULB1 1477 aa19.65■□□□□ 0.74
SMAD9-204ENST00000483941 NHSL1Q5SYE7 1610 aa19.65■□□□□ 0.74
SMAD9-204ENST00000483941 RXRBP28702 533 aa19.64■□□□□ 0.73
SMAD9-204ENST00000483941 PIK3R4Q99570 1358 aa19.64■□□□□ 0.73
SMAD9-204ENST00000483941 NEXMIFQ5QGS0 1516 aa19.63■□□□□ 0.73
SMAD9-204ENST00000483941 ASXL1Q8IXJ9 1541 aa19.63■□□□□ 0.73
SMAD9-204ENST00000483941 GPRASP1Q5JY77 1395 aa19.63■□□□□ 0.73
SMAD9-204ENST00000483941 ADGRF5Q8IZF2 1346 aa19.63■□□□□ 0.73
SMAD9-204ENST00000483941 C19orf44Q9H6X5 657 aa19.63■□□□□ 0.73
SMAD9-204ENST00000483941 PPLO60437 1756 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms