RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 A2MP01023 1474 aa7.91□□□□□ -1.14
COL17A1-206ENST00000483876 PZPP20742 1482 aa7.91□□□□□ -1.14
COL17A1-206ENST00000483876 KIF14Q15058 1648 aa7.9□□□□□ -1.14
COL17A1-206ENST00000483876 SCAF11Q99590 1463 aaKnown RBP7.9□□□□□ -1.14
COL17A1-206ENST00000483876 TXNDC2Q86VQ3 553 aa7.9□□□□□ -1.14
COL17A1-206ENST00000483876 ABCC5O15440 1437 aa7.89□□□□□ -1.15
COL17A1-206ENST00000483876 DAPK1P53355 1430 aa7.89□□□□□ -1.15
COL17A1-206ENST00000483876 EP400Q96L91 3159 aa7.89□□□□□ -1.15
COL17A1-206ENST00000483876 LTKP29376 864 aa7.89□□□□□ -1.15
COL17A1-206ENST00000483876 USP21Q9UK80 565 aa7.89□□□□□ -1.15
COL17A1-206ENST00000483876 PLXNC1O60486 1568 aa7.88□□□□□ -1.15
COL17A1-206ENST00000483876 ZNF644Q9H582 1327 aaPredicted RBP7.88□□□□□ -1.15
COL17A1-206ENST00000483876 AHDC1Q5TGY3 1603 aaPredicted RBP7.88□□□□□ -1.15
COL17A1-206ENST00000483876 SAMD9LQ8IVG5 1584 aa7.88□□□□□ -1.15
COL17A1-206ENST00000483876 PRDM15P57071 1507 aaPredicted RBP7.88□□□□□ -1.15
COL17A1-206ENST00000483876 TSPY4P0CV99 314 aa7.87□□□□□ -1.15
COL17A1-206ENST00000483876 TSPY10P0CW01 314 aa7.87□□□□□ -1.15
COL17A1-206ENST00000483876 R3HDM1Q15032 1099 aaKnown RBP7.87□□□□□ -1.15
COL17A1-206ENST00000483876 ABCC3O15438 1527 aa7.87□□□□□ -1.15
COL17A1-206ENST00000483876 KIAA1107Q9UPP5 1409 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 DIP2AQ14689 1571 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 ADAMTS2O95450 1211 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 RRP7BPQ9NSQ0 103 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 EID1Q9Y6B2 187 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 ADGRL2O95490 1459 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 CAMSAP2Q08AD1 1489 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 PLEKHH2Q8IVE3 1493 aa7.86□□□□□ -1.15
COL17A1-206ENST00000483876 ANKRD30AQ9BXX3 1397 aa7.85□□□□□ -1.15
COL17A1-206ENST00000483876 WASHC2CQ9Y4E1 1318 aa7.85□□□□□ -1.15
COL17A1-206ENST00000483876 CAPN15O75808 1086 aa7.85□□□□□ -1.15
COL17A1-206ENST00000483876 CHIC2Q9UKJ5 165 aa7.85□□□□□ -1.15
COL17A1-206ENST00000483876 ZNF777Q9ULD5 760 aaPredicted RBP7.85□□□□□ -1.15
COL17A1-206ENST00000483876 CDC42BPAQ5VT25 1732 aa7.84□□□□□ -1.15
COL17A1-206ENST00000483876 MBD5Q9P267 1494 aa7.84□□□□□ -1.15
COL17A1-206ENST00000483876 LRRC59Q96AG4 307 aaKnown RBP7.84□□□□□ -1.15
COL17A1-206ENST00000483876 ARHGEF5Q12774 1597 aa7.84□□□□□ -1.15
COL17A1-206ENST00000483876 NKTRP30414 1462 aaKnown RBP7.83□□□□□ -1.16
COL17A1-206ENST00000483876 ZNF316A6NFI3 1004 aaPredicted RBP7.83□□□□□ -1.16
COL17A1-206ENST00000483876 GIGYF1O75420 1035 aaPredicted RBP7.83□□□□□ -1.16
COL17A1-206ENST00000483876 BAG6P46379 1132 aa7.83□□□□□ -1.16
COL17A1-206ENST00000483876 SLC26A8Q96RN1 970 aa7.83□□□□□ -1.16
COL17A1-206ENST00000483876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.83□□□□□ -1.16
COL17A1-206ENST00000483876 ATRNO75882 1429 aa7.83□□□□□ -1.16
COL17A1-206ENST00000483876 GCC2Q8IWJ2 1684 aa7.83□□□□□ -1.16
COL17A1-206ENST00000483876 HNRNPMP52272 730 aaKnown RBP eCLIP7.82□□□□□ -1.16
COL17A1-206ENST00000483876 BRINP3Q76B58 766 aa7.82□□□□□ -1.16
COL17A1-206ENST00000483876 C14orf37Q86TY3 774 aa7.82□□□□□ -1.16
COL17A1-206ENST00000483876 MPHOSPH9Q99550 1183 aa7.82□□□□□ -1.16
COL17A1-206ENST00000483876 PPP1R1BQ9UD71 204 aaPredicted RBP7.82□□□□□ -1.16
COL17A1-206ENST00000483876 CDC42BPBQ9Y5S2 1711 aa7.82□□□□□ -1.16
COL17A1-206ENST00000483876 CEP350Q5VT06 3117 aa7.82□□□□□ -1.16
COL17A1-206ENST00000483876 PREX2Q70Z35 1606 aa7.81□□□□□ -1.16
COL17A1-206ENST00000483876 ARHGAP23Q9P227 1491 aa7.81□□□□□ -1.16
COL17A1-206ENST00000483876 RTEL1-TNFRSF6BF6WH68 1400 aa7.81□□□□□ -1.16
COL17A1-206ENST00000483876 CADPS2Q86UW7 1296 aa7.81□□□□□ -1.16
COL17A1-206ENST00000483876 FNBP4Q8N3X1 1017 aaPredicted RBP7.81□□□□□ -1.16
COL17A1-206ENST00000483876 KDM5AP29375 1690 aaKnown RBP7.8□□□□□ -1.16
COL17A1-206ENST00000483876 SLIT1O75093 1534 aa7.8□□□□□ -1.16
COL17A1-206ENST00000483876 KIF3BO15066 747 aa7.8□□□□□ -1.16
COL17A1-206ENST00000483876 PPP1R15AO75807 674 aaPredicted RBP7.8□□□□□ -1.16
COL17A1-206ENST00000483876 ATF3P18847 181 aa7.8□□□□□ -1.16
COL17A1-206ENST00000483876 PNPLA6Q8IY17 1366 aa7.8□□□□□ -1.16
COL17A1-206ENST00000483876 CCDC141Q6ZP82 1450 aa7.8□□□□□ -1.16
COL17A1-206ENST00000483876 ANKRD50Q9ULJ7 1429 aa7.79□□□□□ -1.16
COL17A1-206ENST00000483876 GJD4Q96KN9 370 aaPredicted RBP7.79□□□□□ -1.16
COL17A1-206ENST00000483876 NINLQ9Y2I6 1382 aa7.79□□□□□ -1.16
COL17A1-206ENST00000483876 SYCP2Q9BX26 1530 aa7.78□□□□□ -1.16
COL17A1-206ENST00000483876 SIN3AQ96ST3 1273 aa7.78□□□□□ -1.16
COL17A1-206ENST00000483876 UNC13BO14795 1591 aa7.78□□□□□ -1.16
COL17A1-206ENST00000483876 INO80Q9ULG1 1556 aaPredicted RBP7.78□□□□□ -1.16
COL17A1-206ENST00000483876 MAST1Q9Y2H9 1570 aa7.78□□□□□ -1.16
COL17A1-206ENST00000483876 ADGBQ8N7X0 1667 aa7.78□□□□□ -1.16
COL17A1-206ENST00000483876 CROCC2H7BZ55 1655 aa7.77□□□□□ -1.17
COL17A1-206ENST00000483876 DHX29Q7Z478 1369 aaKnown RBP7.77□□□□□ -1.17
COL17A1-206ENST00000483876 PRELPP51888 382 aa7.77□□□□□ -1.17
COL17A1-206ENST00000483876 EN1Q05925 392 aaPredicted RBP7.77□□□□□ -1.17
COL17A1-206ENST00000483876 C19orf44Q9H6X5 657 aa7.77□□□□□ -1.17
COL17A1-206ENST00000483876 UBR1Q8IWV7 1749 aa7.77□□□□□ -1.17
COL17A1-206ENST00000483876 ANKRD30BQ9BXX2 1392 aa7.76□□□□□ -1.17
COL17A1-206ENST00000483876 KIF15Q9NS87 1388 aa7.76□□□□□ -1.17
COL17A1-206ENST00000483876 NEUROD1Q13562 356 aa7.76□□□□□ -1.17
COL17A1-206ENST00000483876 SLC4A1APQ9BWU0 796 aaKnown RBP7.76□□□□□ -1.17
COL17A1-206ENST00000483876 NCOA3Q9Y6Q9 1424 aa7.76□□□□□ -1.17
COL17A1-206ENST00000483876 TMEM2Q9UHN6 1383 aa7.75□□□□□ -1.17
COL17A1-206ENST00000483876 BCANQ96GW7 911 aa7.75□□□□□ -1.17
COL17A1-206ENST00000483876 ERVK-7P63135 1459 aa7.75□□□□□ -1.17
COL17A1-206ENST00000483876 TONSLQ96HA7 1378 aa7.74□□□□□ -1.17
COL17A1-206ENST00000483876 CAMTA1Q9Y6Y1 1673 aa7.74□□□□□ -1.17
COL17A1-206ENST00000483876 DIEXFQ68CQ4 756 aaKnown RBP7.74□□□□□ -1.17
COL17A1-206ENST00000483876 DDX17Q92841 729 aaKnown RBP7.74□□□□□ -1.17
COL17A1-206ENST00000483876 SPON1Q9HCB6 807 aa7.74□□□□□ -1.17
COL17A1-206ENST00000483876 PTCH1Q13635 1447 aa7.74□□□□□ -1.17
COL17A1-206ENST00000483876 RALGAPBQ86X10 1494 aa7.74□□□□□ -1.17
COL17A1-206ENST00000483876 MROH1Q8NDA8 1641 aa7.74□□□□□ -1.17
COL17A1-206ENST00000483876 TET3O43151 1660 aa7.73□□□□□ -1.17
COL17A1-206ENST00000483876 ASXL1Q8IXJ9 1541 aa7.73□□□□□ -1.17
COL17A1-206ENST00000483876 NUP155O75694 1391 aa7.73□□□□□ -1.17
COL17A1-206ENST00000483876 SEPT12Q8IYM1 358 aa7.73□□□□□ -1.17
COL17A1-206ENST00000483876 STAG3Q9UJ98 1225 aa7.73□□□□□ -1.17
COL17A1-206ENST00000483876 ERBINQ96RT1 1412 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms