RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 KIF7Q2M1P5 1343 aa36.56■■■■□ 3.44
SHOX2-204ENST00000483851 ST20-MTHFSA0A0A6YYL1 179 aa36.53■■■■□ 3.44
SHOX2-204ENST00000483851 SPATA31D1Q6ZQQ2 1576 aa36.52■■■■□ 3.44
SHOX2-204ENST00000483851 CHGAP10645 457 aaKnown RBP36.51■■■■□ 3.44
SHOX2-204ENST00000483851 IQGAP1P46940 1657 aa36.5■■■■□ 3.43
SHOX2-204ENST00000483851 IDI1Q13907 227 aa36.5■■■■□ 3.43
SHOX2-204ENST00000483851 ANP32CO43423 234 aa36.47■■■■□ 3.43
SHOX2-204ENST00000483851 ESF1Q9H501 851 aaKnown RBP36.47■■■■□ 3.43
SHOX2-204ENST00000483851 ADGRF5Q8IZF2 1346 aa36.46■■■■□ 3.43
SHOX2-204ENST00000483851 TMEM131LA2VDJ0 1609 aa36.46■■■■□ 3.43
SHOX2-204ENST00000483851 SCAF11Q99590 1463 aaKnown RBP36.45■■■■□ 3.43
SHOX2-204ENST00000483851 MLECQ14165 292 aa36.45■■■■□ 3.43
SHOX2-204ENST00000483851 NEXMIFQ5QGS0 1516 aa36.44■■■■□ 3.42
SHOX2-204ENST00000483851 ZFYVE9O95405 1425 aa36.43■■■■□ 3.42
SHOX2-204ENST00000483851 YTHDC1Q96MU7 727 aaKnown RBP36.43■■■■□ 3.42
SHOX2-204ENST00000483851 PIK3C2GO75747 1445 aa36.43■■■■□ 3.42
SHOX2-204ENST00000483851 SETBP1Q9Y6X0 1596 aa36.43■■■■□ 3.42
SHOX2-204ENST00000483851 FBXO31Q5XUX0 539 aaPredicted RBP36.41■■■■□ 3.42
SHOX2-204ENST00000483851 ZMYM3Q14202 1370 aa36.4■■■■□ 3.42
SHOX2-204ENST00000483851 VGFO15240 615 aaPredicted RBP36.4■■■■□ 3.42
SHOX2-204ENST00000483851 EIF3AQ14152 1382 aaKnown RBP36.37■■■■□ 3.41
SHOX2-204ENST00000483851 CCER2I3L3R5 266 aa36.36■■■■□ 3.41
SHOX2-204ENST00000483851 TESK2Q96S53 571 aa36.35■■■■□ 3.41
SHOX2-204ENST00000483851 MYO5BQ9ULV0 1848 aa36.33■■■■□ 3.41
SHOX2-204ENST00000483851 CFAP70Q5T0N1 1121 aa36.33■■■■□ 3.41
SHOX2-204ENST00000483851 C14orf93Q9H972 538 aaKnown RBP36.33■■■■□ 3.41
SHOX2-204ENST00000483851 SLC24A1O60721 1099 aa36.31■■■■□ 3.4
SHOX2-204ENST00000483851 GTF3C3Q9Y5Q9 886 aa36.28■■■■□ 3.4
SHOX2-204ENST00000483851 TMF1P82094 1093 aa36.27■■■■□ 3.4
SHOX2-204ENST00000483851 KDM5AP29375 1690 aaKnown RBP36.24■■■■□ 3.39
SHOX2-204ENST00000483851 ADGRB1O14514 1584 aa36.24■■■■□ 3.39
SHOX2-204ENST00000483851 A2ML1A8K2U0 1454 aa36.23■■■■□ 3.39
SHOX2-204ENST00000483851 MYO3AQ8NEV4 1616 aa36.22■■■■□ 3.39
SHOX2-204ENST00000483851 STAG3Q9UJ98 1225 aa36.22■■■■□ 3.39
SHOX2-204ENST00000483851 TNRQ92752 1358 aa36.19■■■■□ 3.38
SHOX2-204ENST00000483851 CDCA8Q53HL2 280 aa36.18■■■■□ 3.38
SHOX2-204ENST00000483851 POLR3GLQ9BT43 218 aa36.18■■■■□ 3.38
SHOX2-204ENST00000483851 DISP3Q9P2K9 1392 aa36.17■■■■□ 3.38
SHOX2-204ENST00000483851 SBNO2Q9Y2G9 1366 aa36.17■■■■□ 3.38
SHOX2-204ENST00000483851 FER1L4A9Z1Z3 1794 aa36.15■■■■□ 3.38
SHOX2-204ENST00000483851 PRKRIP1Q9H875 184 aaPredicted RBP36.11■■■■□ 3.37
SHOX2-204ENST00000483851 NLRP1Q9C000 1473 aa36.1■■■■□ 3.37
SHOX2-204ENST00000483851 C3P01024 1663 aa36.08■■■■□ 3.37
SHOX2-204ENST00000483851 RIMS2Q9UQ26 1411 aa36.08■■■■□ 3.37
SHOX2-204ENST00000483851 ABCF1Q8NE71 845 aaKnown RBP eCLIP36.07■■■■□ 3.36
SHOX2-204ENST00000483851 NUTM2DQ5VT03 806 aaPredicted RBP36.06■■■■□ 3.36
SHOX2-204ENST00000483851 HDGFP51858 240 aaKnown RBP36.05■■■■□ 3.36
SHOX2-204ENST00000483851 CENPJQ9HC77 1338 aaPredicted RBP36.03■■■■□ 3.36
SHOX2-204ENST00000483851 UBR1Q8IWV7 1749 aa36.03■■■■□ 3.36
SHOX2-204ENST00000483851 KTN1Q86UP2 1357 aaKnown RBP36.02■■■■□ 3.36
SHOX2-204ENST00000483851 ALKQ9UM73 1620 aa36■■■■□ 3.35
SHOX2-204ENST00000483851 TMEM132EQ6IEE7 984 aa35.99■■■■□ 3.35
SHOX2-204ENST00000483851 ARHGEF28Q8N1W1 1705 aaKnown RBP35.99■■■■□ 3.35
SHOX2-204ENST00000483851 ASXL1Q8IXJ9 1541 aa35.98■■■■□ 3.35
SHOX2-204ENST00000483851 TRAK1Q9UPV9 953 aa35.97■■■■□ 3.35
SHOX2-204ENST00000483851 QRICH2Q9H0J4 1663 aa35.97■■■■□ 3.35
SHOX2-204ENST00000483851 TMEM2Q9UHN6 1383 aa35.93■■■■□ 3.34
SHOX2-204ENST00000483851 PER1O15534 1290 aaPredicted RBP35.92■■■■□ 3.34
SHOX2-204ENST00000483851 YTHDC2Q9H6S0 1430 aaKnown RBP35.9■■■■□ 3.34
SHOX2-204ENST00000483851 SETD1AO15047 1707 aaKnown RBP35.89■■■■□ 3.34
SHOX2-204ENST00000483851 CEBPAP49715 358 aaPredicted RBP35.89■■■■□ 3.34
SHOX2-204ENST00000483851 PUS7Q96PZ0 661 aaKnown RBP35.89■■■■□ 3.34
SHOX2-204ENST00000483851 MYOM1P52179 1685 aa35.87■■■■□ 3.33
SHOX2-204ENST00000483851 RALBP1Q15311 655 aa35.87■■■■□ 3.33
SHOX2-204ENST00000483851 PANK3Q9H999 370 aa35.86■■■■□ 3.33
SHOX2-204ENST00000483851 ADAMTSL3P82987 1691 aa35.86■■■■□ 3.33
SHOX2-204ENST00000483851 NRXN3Q9Y4C0 1643 aa35.85■■■■□ 3.33
SHOX2-204ENST00000483851 DLC1Q96QB1 1528 aa35.83■■■■□ 3.33
SHOX2-204ENST00000483851 PTPRMP28827 1452 aa35.83■■■■□ 3.33
SHOX2-204ENST00000483851 SLIT1O75093 1534 aa35.81■■■■□ 3.32
SHOX2-204ENST00000483851 RIMS1Q86UR5 1692 aaKnown RBP35.81■■■■□ 3.32
SHOX2-204ENST00000483851 LRPPRCP42704 1394 aaKnown RBP35.8■■■■□ 3.32
SHOX2-204ENST00000483851 ARHGAP23Q9P227 1491 aa35.79■■■■□ 3.32
SHOX2-204ENST00000483851 EVC2Q86UK5 1308 aa35.77■■■■□ 3.32
SHOX2-204ENST00000483851 PARD3Q8TEW0 1356 aa35.77■■■■□ 3.32
SHOX2-204ENST00000483851 ABCC11Q96J66 1382 aa35.76■■■■□ 3.31
SHOX2-204ENST00000483851 PLEKHG1Q9ULL1 1385 aa35.75■■■■□ 3.31
SHOX2-204ENST00000483851 MRS2Q9HD23 443 aa35.75■■■■□ 3.31
SHOX2-204ENST00000483851 THEMISQ8N1K5 641 aaPredicted RBP35.74■■■■□ 3.31
SHOX2-204ENST00000483851 STK26Q9P289 416 aa35.73■■■■□ 3.31
SHOX2-204ENST00000483851 MYBBP1AQ9BQG0 1328 aaKnown RBP35.73■■■■□ 3.31
SHOX2-204ENST00000483851 NPC1L1Q9UHC9 1359 aa35.72■■■■□ 3.31
SHOX2-204ENST00000483851 TULP4Q9NRJ4 1543 aa35.71■■■■□ 3.31
SHOX2-204ENST00000483851 KNSTRNQ9Y448 316 aa35.71■■■■□ 3.31
SHOX2-204ENST00000483851 EID1Q9Y6B2 187 aa35.71■■■■□ 3.31
SHOX2-204ENST00000483851 KNDC1Q76NI1 1749 aa35.7■■■■□ 3.3
SHOX2-204ENST00000483851 SIRT1Q96EB6 747 aa35.69■■■■□ 3.3
SHOX2-204ENST00000483851 CCDC184Q52MB2 194 aa35.68■■■■□ 3.3
SHOX2-204ENST00000483851 BRD4O60885 1362 aaPredicted RBP35.68■■■■□ 3.3
SHOX2-204ENST00000483851 POGKQ9P215 609 aa35.67■■■■□ 3.3
SHOX2-204ENST00000483851 PRAM1Q96QH2 718 aa35.67■■■■□ 3.3
SHOX2-204ENST00000483851 TECPR2O15040 1411 aa35.67■■■■□ 3.3
SHOX2-204ENST00000483851 CEP170BQ9Y4F5 1589 aaPredicted RBP35.67■■■■□ 3.3
SHOX2-204ENST00000483851 TXNDC2Q86VQ3 553 aa35.65■■■■□ 3.3
SHOX2-204ENST00000483851 ADAMTS13Q76LX8 1427 aa35.65■■■■□ 3.3
SHOX2-204ENST00000483851 LTKP29376 864 aa35.64■■■■□ 3.3
SHOX2-204ENST00000483851 METP08581 1390 aa35.64■■■■□ 3.3
SHOX2-204ENST00000483851 NINLQ9Y2I6 1382 aa35.64■■■■□ 3.3
SHOX2-204ENST00000483851 SETD1BQ9UPS6 1966 aaKnown RBP35.63■■■■□ 3.29
SHOX2-204ENST00000483851 SENP3Q9H4L4 574 aaPredicted RBP35.63■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms