RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 RBM6P78332 1123 aaKnown RBP12.12□□□□□ -0.47
USP54-213ENST00000481991 MAP3K1Q13233 1512 aa12.11□□□□□ -0.47
USP54-213ENST00000481991 KIF15Q9NS87 1388 aa12.11□□□□□ -0.47
USP54-213ENST00000481991 ADAMTS2O95450 1211 aa12.11□□□□□ -0.47
USP54-213ENST00000481991 PIK3C2BO00750 1634 aa12.11□□□□□ -0.47
USP54-213ENST00000481991 EFCAB6Q5THR3 1501 aa12.11□□□□□ -0.47
USP54-213ENST00000481991 ARHGEF5Q12774 1597 aa12.1□□□□□ -0.47
USP54-213ENST00000481991 SLC52A1Q9NWF4 448 aa12.1□□□□□ -0.47
USP54-213ENST00000481991 ARHGAP31Q2M1Z3 1444 aa12.1□□□□□ -0.47
USP54-213ENST00000481991 FGD6Q6ZV73 1430 aa12.1□□□□□ -0.47
USP54-213ENST00000481991 BRINP3Q76B58 766 aa12.09□□□□□ -0.47
USP54-213ENST00000481991 LRRC59Q96AG4 307 aaKnown RBP12.09□□□□□ -0.47
USP54-213ENST00000481991 TBX22Q9Y458 520 aa12.09□□□□□ -0.47
USP54-213ENST00000481991 DUOX2Q9NRD8 1548 aa12.08□□□□□ -0.48
USP54-213ENST00000481991 KANK4Q5T7N3 995 aaPredicted RBP12.08□□□□□ -0.48
USP54-213ENST00000481991 DDX17Q92841 729 aaKnown RBP12.08□□□□□ -0.48
USP54-213ENST00000481991 AMOTL2Q9Y2J4 779 aa12.08□□□□□ -0.48
USP54-213ENST00000481991 NKTRP30414 1462 aaKnown RBP12.08□□□□□ -0.48
USP54-213ENST00000481991 TET3O43151 1660 aa12.07□□□□□ -0.48
USP54-213ENST00000481991 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.07□□□□□ -0.48
USP54-213ENST00000481991 MYOM3Q5VTT5 1437 aa12.06□□□□□ -0.48
USP54-213ENST00000481991 MROH1Q8NDA8 1641 aa12.06□□□□□ -0.48
USP54-213ENST00000481991 EIF2AK4Q9P2K8 1649 aaKnown RBP12.06□□□□□ -0.48
USP54-213ENST00000481991 COL16A1Q07092 1604 aaPredicted RBP12.05□□□□□ -0.48
USP54-213ENST00000481991 USP21Q9UK80 565 aa12.05□□□□□ -0.48
USP54-213ENST00000481991 PLEKHG1Q9ULL1 1385 aa12.05□□□□□ -0.48
USP54-213ENST00000481991 RIMS2Q9UQ26 1411 aa12.04□□□□□ -0.48
USP54-213ENST00000481991 ATAD2Q6PL18 1390 aa12.04□□□□□ -0.48
USP54-213ENST00000481991 CDK12Q9NYV4 1490 aaPredicted RBP12.03□□□□□ -0.48
USP54-213ENST00000481991 APLP2Q06481 763 aa12.03□□□□□ -0.48
USP54-213ENST00000481991 MAST1Q9Y2H9 1570 aa12.03□□□□□ -0.48
USP54-213ENST00000481991 RGS12O14924 1447 aa12.03□□□□□ -0.48
USP54-213ENST00000481991 ERBINQ96RT1 1412 aa12.03□□□□□ -0.48
USP54-213ENST00000481991 NCOA3Q9Y6Q9 1424 aa12.02□□□□□ -0.49
USP54-213ENST00000481991 TRPC5Q9UL62 973 aaPredicted RBP12.01□□□□□ -0.49
USP54-213ENST00000481991 ANKRD30AQ9BXX3 1397 aa12.01□□□□□ -0.49
USP54-213ENST00000481991 ABCC5O15440 1437 aa12□□□□□ -0.49
USP54-213ENST00000481991 NWD1Q149M9 1564 aa12□□□□□ -0.49
USP54-213ENST00000481991 KDM5AP29375 1690 aaKnown RBP12□□□□□ -0.49
USP54-213ENST00000481991 CHD2O14647 1828 aaKnown RBP11.98□□□□□ -0.49
USP54-213ENST00000481991 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.98□□□□□ -0.49
USP54-213ENST00000481991 SHPRHQ149N8 1683 aa11.98□□□□□ -0.49
USP54-213ENST00000481991 ADGRB3O60242 1522 aa11.98□□□□□ -0.49
USP54-213ENST00000481991 ZNF326Q5BKZ1 582 aaKnown RBP11.98□□□□□ -0.49
USP54-213ENST00000481991 CCDC125Q86Z20 511 aa11.98□□□□□ -0.49
USP54-213ENST00000481991 AHDC1Q5TGY3 1603 aaPredicted RBP11.97□□□□□ -0.49
USP54-213ENST00000481991 NOS1P29475 1434 aa11.97□□□□□ -0.49
USP54-213ENST00000481991 SF3B2Q13435 895 aaKnown RBP11.97□□□□□ -0.49
USP54-213ENST00000481991 FAM50AQ14320 339 aaKnown RBP11.97□□□□□ -0.49
USP54-213ENST00000481991 LOC105371045A0A1W2PR82 267 aa11.96□□□□□ -0.49
USP54-213ENST00000481991 ZFYVE9O95405 1425 aa11.95□□□□□ -0.5
USP54-213ENST00000481991 SETD5Q9C0A6 1442 aa11.95□□□□□ -0.5
USP54-213ENST00000481991 PNPLA6Q8IY17 1366 aa11.95□□□□□ -0.5
USP54-213ENST00000481991 SETBP1Q9Y6X0 1596 aa11.95□□□□□ -0.5
USP54-213ENST00000481991 SRCAPQ6ZRS2 3230 aa11.95□□□□□ -0.5
USP54-213ENST00000481991 DAPK1P53355 1430 aa11.94□□□□□ -0.5
USP54-213ENST00000481991 ASXL1Q8IXJ9 1541 aa11.93□□□□□ -0.5
USP54-213ENST00000481991 DEFB132Q7Z7B7 95 aa11.93□□□□□ -0.5
USP54-213ENST00000481991 ORAI2Q96SN7 254 aa11.93□□□□□ -0.5
USP54-213ENST00000481991 ADAMTS13Q76LX8 1427 aa11.93□□□□□ -0.5
USP54-213ENST00000481991 PIK3R4Q99570 1358 aa11.92□□□□□ -0.5
USP54-213ENST00000481991 PLEKHG5O94827 1062 aa11.92□□□□□ -0.5
USP54-213ENST00000481991 PTPRUQ92729 1446 aa11.92□□□□□ -0.5
USP54-213ENST00000481991 DIP2AQ14689 1571 aa11.92□□□□□ -0.5
USP54-213ENST00000481991 LMTK2Q8IWU2 1503 aa11.91□□□□□ -0.5
USP54-213ENST00000481991 FNBP4Q8N3X1 1017 aaPredicted RBP11.91□□□□□ -0.5
USP54-213ENST00000481991 GJD4Q96KN9 370 aaPredicted RBP11.91□□□□□ -0.5
USP54-213ENST00000481991 MYO5BQ9ULV0 1848 aa11.9□□□□□ -0.5
USP54-213ENST00000481991 PSDA5PKW4 1024 aaPredicted RBP11.9□□□□□ -0.5
USP54-213ENST00000481991 MST1RQ04912 1400 aa11.9□□□□□ -0.5
USP54-213ENST00000481991 VPS8Q8N3P4 1428 aa11.89□□□□□ -0.51
USP54-213ENST00000481991 XPCQ01831 940 aaPredicted RBP11.89□□□□□ -0.51
USP54-213ENST00000481991 CCDC9Q9Y3X0 531 aaKnown RBP11.89□□□□□ -0.51
USP54-213ENST00000481991 TRPM2O94759 1503 aa11.88□□□□□ -0.51
USP54-213ENST00000481991 A0A0G2JS52 829 aa11.88□□□□□ -0.51
USP54-213ENST00000481991 MYT1Q01538 1121 aa11.88□□□□□ -0.51
USP54-213ENST00000481991 ESCO1Q5FWF5 840 aa11.88□□□□□ -0.51
USP54-213ENST00000481991 PTPN23Q9H3S7 1636 aa11.88□□□□□ -0.51
USP54-213ENST00000481991 GCC2Q8IWJ2 1684 aa11.87□□□□□ -0.51
USP54-213ENST00000481991 DCCP43146 1447 aa11.87□□□□□ -0.51
USP54-213ENST00000481991 HAP1P54257 671 aaPredicted RBP11.87□□□□□ -0.51
USP54-213ENST00000481991 ANKRD50Q9ULJ7 1429 aa11.86□□□□□ -0.51
USP54-213ENST00000481991 TMEM131LA2VDJ0 1609 aa11.86□□□□□ -0.51
USP54-213ENST00000481991 METP08581 1390 aa11.86□□□□□ -0.51
USP54-213ENST00000481991 RPRD2Q5VT52 1461 aaKnown RBP11.86□□□□□ -0.51
USP54-213ENST00000481991 NUTM2FA1L443 756 aa11.85□□□□□ -0.51
USP54-213ENST00000481991 ITGAEP38570 1179 aa11.85□□□□□ -0.51
USP54-213ENST00000481991 ATRNO75882 1429 aa11.85□□□□□ -0.51
USP54-213ENST00000481991 SOS2Q07890 1332 aaPredicted RBP11.85□□□□□ -0.51
USP54-213ENST00000481991 FOXO3O43524 673 aa11.84□□□□□ -0.51
USP54-213ENST00000481991 C1orf167Q5SNV9 1468 aa11.83□□□□□ -0.52
USP54-213ENST00000481991 UNC5CLQ8IV45 518 aa11.83□□□□□ -0.52
USP54-213ENST00000481991 SEPT12Q8IYM1 358 aa11.83□□□□□ -0.52
USP54-213ENST00000481991 CROCC2H7BZ55 1655 aa11.83□□□□□ -0.52
USP54-213ENST00000481991 PTCH1Q13635 1447 aa11.83□□□□□ -0.52
USP54-213ENST00000481991 NUP155O75694 1391 aa11.82□□□□□ -0.52
USP54-213ENST00000481991 BLMP54132 1417 aaPredicted RBP11.82□□□□□ -0.52
USP54-213ENST00000481991 ADGRL3Q9HAR2 1447 aa11.82□□□□□ -0.52
USP54-213ENST00000481991 HRCP23327 699 aa11.81□□□□□ -0.52
USP54-213ENST00000481991 NHSL1Q5SYE7 1610 aa11.81□□□□□ -0.52
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