RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 POLA2Q14181 598 aa15.59■□□□□ 0.09
GPNMB-211ENST00000479625 TMEM94Q12767 1356 aa15.59■□□□□ 0.09
GPNMB-211ENST00000479625 EFCAB6Q5THR3 1501 aa15.58■□□□□ 0.09
GPNMB-211ENST00000479625 LRRC9Q6ZRR7 1453 aa15.58■□□□□ 0.08
GPNMB-211ENST00000479625 TET3O43151 1660 aa15.57■□□□□ 0.08
GPNMB-211ENST00000479625 MYO5BQ9ULV0 1848 aa15.57■□□□□ 0.08
GPNMB-211ENST00000479625 ARHGAP31Q2M1Z3 1444 aa15.57■□□□□ 0.08
GPNMB-211ENST00000479625 RBM33Q96EV2 1170 aaKnown RBP15.56■□□□□ 0.08
GPNMB-211ENST00000479625 TMEM2Q9UHN6 1383 aa15.56■□□□□ 0.08
GPNMB-211ENST00000479625 COL16A1Q07092 1604 aaPredicted RBP15.56■□□□□ 0.08
GPNMB-211ENST00000479625 ADGRB3O60242 1522 aa15.54■□□□□ 0.08
GPNMB-211ENST00000479625 NKTRP30414 1462 aaKnown RBP15.54■□□□□ 0.08
GPNMB-211ENST00000479625 CHD2O14647 1828 aaKnown RBP15.53■□□□□ 0.08
GPNMB-211ENST00000479625 EID1Q9Y6B2 187 aa15.53■□□□□ 0.08
GPNMB-211ENST00000479625 MYOM3Q5VTT5 1437 aa15.52■□□□□ 0.08
GPNMB-211ENST00000479625 ERBINQ96RT1 1412 aa15.52■□□□□ 0.08
GPNMB-211ENST00000479625 KIF15Q9NS87 1388 aa15.52■□□□□ 0.08
GPNMB-211ENST00000479625 GCC2Q8IWJ2 1684 aa15.52■□□□□ 0.08
GPNMB-211ENST00000479625 LRP6O75581 1613 aa15.51■□□□□ 0.07
GPNMB-211ENST00000479625 PTPN23Q9H3S7 1636 aa15.5■□□□□ 0.07
GPNMB-211ENST00000479625 SLC26A8Q96RN1 970 aa15.5■□□□□ 0.07
GPNMB-211ENST00000479625 SHPRHQ149N8 1683 aa15.49■□□□□ 0.07
GPNMB-211ENST00000479625 LMTK2Q8IWU2 1503 aa15.48■□□□□ 0.07
GPNMB-211ENST00000479625 KCNA6P17658 529 aa15.48■□□□□ 0.07
GPNMB-211ENST00000479625 PROSER2Q86WR7 435 aaPredicted RBP15.48■□□□□ 0.07
GPNMB-211ENST00000479625 STAG3Q9UJ98 1225 aa15.48■□□□□ 0.07
GPNMB-211ENST00000479625 ABCC5O15440 1437 aa15.47■□□□□ 0.07
GPNMB-211ENST00000479625 VPS8Q8N3P4 1428 aa15.47■□□□□ 0.07
GPNMB-211ENST00000479625 MSH6P52701 1360 aa15.47■□□□□ 0.07
GPNMB-211ENST00000479625 JCADQ9P266 1359 aa15.47■□□□□ 0.07
GPNMB-211ENST00000479625 KANK4Q5T7N3 995 aaPredicted RBP15.46■□□□□ 0.07
GPNMB-211ENST00000479625 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.46■□□□□ 0.06
GPNMB-211ENST00000479625 NOS1P29475 1434 aa15.44■□□□□ 0.06
GPNMB-211ENST00000479625 IDI1Q13907 227 aa15.44■□□□□ 0.06
GPNMB-211ENST00000479625 RRP7BPQ9NSQ0 103 aa15.44■□□□□ 0.06
GPNMB-211ENST00000479625 DAPK1P53355 1430 aa15.43■□□□□ 0.06
GPNMB-211ENST00000479625 AHDC1Q5TGY3 1603 aaPredicted RBP15.43■□□□□ 0.06
GPNMB-211ENST00000479625 KANK1Q14678 1352 aa15.43■□□□□ 0.06
GPNMB-211ENST00000479625 TMEM131LA2VDJ0 1609 aa15.42■□□□□ 0.06
GPNMB-211ENST00000479625 DIP2AQ14689 1571 aa15.41■□□□□ 0.06
GPNMB-211ENST00000479625 TRIM52Q96A61 297 aa15.41■□□□□ 0.06
GPNMB-211ENST00000479625 SLAIN2Q9P270 581 aa15.41■□□□□ 0.06
GPNMB-211ENST00000479625 ZFYVE9O95405 1425 aa15.41■□□□□ 0.06
GPNMB-211ENST00000479625 UPF1Q92900 1129 aaKnown RBP eCLIP15.4■□□□□ 0.06
GPNMB-211ENST00000479625 FGD6Q6ZV73 1430 aa15.38■□□□□ 0.05
GPNMB-211ENST00000479625 ATXN8OSP0DMR3 200 aa15.38■□□□□ 0.05
GPNMB-211ENST00000479625 BCANQ96GW7 911 aa15.38■□□□□ 0.05
GPNMB-211ENST00000479625 PLEKHG1Q9ULL1 1385 aa15.37■□□□□ 0.05
GPNMB-211ENST00000479625 NHSL1Q5SYE7 1610 aa15.36■□□□□ 0.05
GPNMB-211ENST00000479625 RIMS2Q9UQ26 1411 aa15.36■□□□□ 0.05
GPNMB-211ENST00000479625 MEX3CQ5U5Q3 659 aaKnown RBP15.36■□□□□ 0.05
GPNMB-211ENST00000479625 SPATA31A6Q5VVP1 1343 aa15.36■□□□□ 0.05
GPNMB-211ENST00000479625 SRCAPQ6ZRS2 3230 aa15.36■□□□□ 0.05
GPNMB-211ENST00000479625 E9PCH4 1651 aa15.35■□□□□ 0.05
GPNMB-211ENST00000479625 CHIC2Q9UKJ5 165 aa15.34■□□□□ 0.05
GPNMB-211ENST00000479625 RPRD2Q5VT52 1461 aaKnown RBP15.33■□□□□ 0.05
GPNMB-211ENST00000479625 ZNF772Q68DY9 489 aaPredicted RBP15.33■□□□□ 0.04
GPNMB-211ENST00000479625 ANKRD30AQ9BXX3 1397 aa15.33■□□□□ 0.04
GPNMB-211ENST00000479625 ADAMTS13Q76LX8 1427 aa15.32■□□□□ 0.04
GPNMB-211ENST00000479625 UNC13BO14795 1591 aa15.32■□□□□ 0.04
GPNMB-211ENST00000479625 PPP1R15AO75807 674 aaPredicted RBP15.31■□□□□ 0.04
GPNMB-211ENST00000479625 C14orf37Q86TY3 774 aa15.31■□□□□ 0.04
GPNMB-211ENST00000479625 ADGRL2O95490 1459 aa15.31■□□□□ 0.04
GPNMB-211ENST00000479625 CDK12Q9NYV4 1490 aaPredicted RBP15.31■□□□□ 0.04
GPNMB-211ENST00000479625 ASXL1Q8IXJ9 1541 aa15.31■□□□□ 0.04
GPNMB-211ENST00000479625 XRN1Q8IZH2 1706 aaKnown RBP15.31■□□□□ 0.04
GPNMB-211ENST00000479625 TRPM2O94759 1503 aa15.3■□□□□ 0.04
GPNMB-211ENST00000479625 SLC52A1Q9NWF4 448 aa15.3■□□□□ 0.04
GPNMB-211ENST00000479625 NCOA3Q9Y6Q9 1424 aa15.3■□□□□ 0.04
GPNMB-211ENST00000479625 NRXN3Q9Y4C0 1643 aa15.29■□□□□ 0.04
GPNMB-211ENST00000479625 RGS12O14924 1447 aa15.29■□□□□ 0.04
GPNMB-211ENST00000479625 NALCNQ8IZF0 1738 aa15.29■□□□□ 0.04
GPNMB-211ENST00000479625 NUTM2BA6NNL0 878 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-211ENST00000479625 NUTM2EB1AL46 878 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-211ENST00000479625 NUTM2DQ5VT03 806 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-211ENST00000479625 NUTM2AQ8IVF1 878 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-211ENST00000479625 PTPRUQ92729 1446 aa15.27■□□□□ 0.04
GPNMB-211ENST00000479625 RXRBP28702 533 aa15.27■□□□□ 0.04
GPNMB-211ENST00000479625 RBM42Q9BTD8 480 aaKnown RBP15.27■□□□□ 0.04
GPNMB-211ENST00000479625 ZBTB12Q9Y330 459 aaPredicted RBP15.27■□□□□ 0.04
GPNMB-211ENST00000479625 AFF2P51816 1311 aa15.26■□□□□ 0.03
GPNMB-211ENST00000479625 ATF3P18847 181 aa15.25■□□□□ 0.03
GPNMB-211ENST00000479625 BRINP3Q76B58 766 aa15.25■□□□□ 0.03
GPNMB-211ENST00000479625 CADPS2Q86UW7 1296 aa15.25■□□□□ 0.03
GPNMB-211ENST00000479625 TBX22Q9Y458 520 aa15.25■□□□□ 0.03
GPNMB-211ENST00000479625 ANKRD50Q9ULJ7 1429 aa15.25■□□□□ 0.03
GPNMB-211ENST00000479625 IQGAP3Q86VI3 1631 aa15.25■□□□□ 0.03
GPNMB-211ENST00000479625 EP400Q96L91 3159 aa15.23■□□□□ 0.03
GPNMB-211ENST00000479625 LOC105371045A0A1W2PR82 267 aa15.23■□□□□ 0.03
GPNMB-211ENST00000479625 CHGAP10645 457 aaKnown RBP15.23■□□□□ 0.03
GPNMB-211ENST00000479625 C19orf44Q9H6X5 657 aa15.23■□□□□ 0.03
GPNMB-211ENST00000479625 MST1RQ04912 1400 aa15.23■□□□□ 0.03
GPNMB-211ENST00000479625 SETD5Q9C0A6 1442 aa15.23■□□□□ 0.03
GPNMB-211ENST00000479625 PIK3R4Q99570 1358 aa15.23■□□□□ 0.03
GPNMB-211ENST00000479625 DCCP43146 1447 aa15.22■□□□□ 0.03
GPNMB-211ENST00000479625 SETBP1Q9Y6X0 1596 aa15.21■□□□□ 0.03
GPNMB-211ENST00000479625 SPHKAPQ2M3C7 1700 aa15.2■□□□□ 0.02
GPNMB-211ENST00000479625 HDGFP51858 240 aaKnown RBP15.19■□□□□ 0.02
GPNMB-211ENST00000479625 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.19■□□□□ 0.02
GPNMB-211ENST00000479625 DDX17Q92841 729 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms