RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 WDR70Q9NW82 654 aa8.53□□□□□ -1.04
PTCD3-212ENST00000477520 PKDCCQ504Y2 493 aa8.52□□□□□ -1.05
PTCD3-212ENST00000477520 LIAT1Q6ZQX7 453 aa8.52□□□□□ -1.05
PTCD3-212ENST00000477520 ZNF598Q86UK7 904 aaKnown RBP8.51□□□□□ -1.05
PTCD3-212ENST00000477520 DGAT1O75907 488 aa8.5□□□□□ -1.05
PTCD3-212ENST00000477520 S1PR4O95977 384 aa8.5□□□□□ -1.05
PTCD3-212ENST00000477520 PRR14Q9BWN1 585 aa8.5□□□□□ -1.05
PTCD3-212ENST00000477520 SLC4A3P48751 1232 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 PRR20EP86478 221 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 PRR20CP86479 221 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 PRR20DP86480 221 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 PRR20BP86481 221 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 PRR20AP86496 221 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 ANKLE1Q8NAG6 615 aa8.49□□□□□ -1.05
PTCD3-212ENST00000477520 MLLT3P42568 568 aaPredicted RBP8.48□□□□□ -1.05
PTCD3-212ENST00000477520 ZNF697Q5TEC3 545 aa8.48□□□□□ -1.05
PTCD3-212ENST00000477520 TNFRSF10AO00220 468 aa8.47□□□□□ -1.05
PTCD3-212ENST00000477520 GDF9O60383 454 aa8.47□□□□□ -1.05
PTCD3-212ENST00000477520 TMEM134Q9H6X4 195 aa8.47□□□□□ -1.05
PTCD3-212ENST00000477520 FAM187AA6NFU0 413 aa8.46□□□□□ -1.06
PTCD3-212ENST00000477520 ACTN4O43707 911 aaKnown RBP8.46□□□□□ -1.06
PTCD3-212ENST00000477520 DNAJB2P25686 324 aa8.46□□□□□ -1.06
PTCD3-212ENST00000477520 PLA2G2CQ5R387 149 aa8.46□□□□□ -1.06
PTCD3-212ENST00000477520 ST8SIA5O15466 376 aa8.45□□□□□ -1.06
PTCD3-212ENST00000477520 PTGDRQ13258 359 aa8.45□□□□□ -1.06
PTCD3-212ENST00000477520 FAM161AQ3B820 660 aa8.45□□□□□ -1.06
PTCD3-212ENST00000477520 PAXIP1Q6ZW49 1069 aaPredicted RBP8.45□□□□□ -1.06
PTCD3-212ENST00000477520 CFAP44Q96MT7 982 aa8.45□□□□□ -1.06
PTCD3-212ENST00000477520 ADGRG1Q9Y653 693 aa8.45□□□□□ -1.06
PTCD3-212ENST00000477520 CFHP08603 1231 aa8.44□□□□□ -1.06
PTCD3-212ENST00000477520 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.44□□□□□ -1.06
PTCD3-212ENST00000477520 RCCD1A6NED2 376 aa8.43□□□□□ -1.06
PTCD3-212ENST00000477520 SLC10A3P09131 477 aa8.43□□□□□ -1.06
PTCD3-212ENST00000477520 LCE2AQ5TA79 106 aaPredicted RBP8.43□□□□□ -1.06
PTCD3-212ENST00000477520 ADH1BP00325 375 aa8.42□□□□□ -1.06
PTCD3-212ENST00000477520 KMT5BQ4FZB7 885 aa8.42□□□□□ -1.06
PTCD3-212ENST00000477520 RBM46Q8TBY0 533 aaKnown RBP8.42□□□□□ -1.06
PTCD3-212ENST00000477520 AAASQ9NRG9 546 aa8.42□□□□□ -1.06
PTCD3-212ENST00000477520 TREML4Q6UXN2 200 aa8.39□□□□□ -1.07
PTCD3-212ENST00000477520 SLC6A16Q9GZN6 736 aa8.39□□□□□ -1.07
PTCD3-212ENST00000477520 PKD2L1Q9P0L9 805 aa8.39□□□□□ -1.07
PTCD3-212ENST00000477520 NR1I2O75469 434 aa8.38□□□□□ -1.07
PTCD3-212ENST00000477520 DACH1Q9UI36 760 aa8.38□□□□□ -1.07
PTCD3-212ENST00000477520 SCUBE3Q8IX30 993 aa8.37□□□□□ -1.07
PTCD3-212ENST00000477520 FOXC1Q12948 553 aa8.36□□□□□ -1.07
PTCD3-212ENST00000477520 PUS10Q3MIT2 529 aaKnown RBP8.36□□□□□ -1.07
PTCD3-212ENST00000477520 ARHGEF1Q92888 912 aaKnown RBP8.35□□□□□ -1.07
PTCD3-212ENST00000477520 NUTM2FA1L443 756 aa8.34□□□□□ -1.07
PTCD3-212ENST00000477520 KCNV2Q8TDN2 545 aa8.34□□□□□ -1.07
PTCD3-212ENST00000477520 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.33□□□□□ -1.08
PTCD3-212ENST00000477520 SPSB2Q99619 263 aa8.33□□□□□ -1.08
PTCD3-212ENST00000477520 CRIPAKQ8N1N5 446 aa8.32□□□□□ -1.08
PTCD3-212ENST00000477520 PXYLP1Q8TE99 480 aa8.32□□□□□ -1.08
PTCD3-212ENST00000477520 TOR4AQ9NXH8 423 aa8.31□□□□□ -1.08
PTCD3-212ENST00000477520 LMOD2Q6P5Q4 547 aa8.3□□□□□ -1.08
PTCD3-212ENST00000477520 GMPR2Q9P2T1 348 aaKnown RBP8.3□□□□□ -1.08
PTCD3-212ENST00000477520 AVPP01185 164 aa8.29□□□□□ -1.08
PTCD3-212ENST00000477520 FCHSD2O94868 740 aa8.28□□□□□ -1.08
PTCD3-212ENST00000477520 RPIAP49247 311 aa8.28□□□□□ -1.08
PTCD3-212ENST00000477520 THAP11Q96EK4 314 aa8.28□□□□□ -1.08
PTCD3-212ENST00000477520 FCF1Q9Y324 198 aaKnown RBP8.28□□□□□ -1.08
PTCD3-212ENST00000477520 MORN1Q5T089 497 aa8.27□□□□□ -1.09
PTCD3-212ENST00000477520 METTL3Q86U44 580 aaKnown RBP8.27□□□□□ -1.09
PTCD3-212ENST00000477520 FAM160A2Q8N612 972 aaPredicted RBP8.27□□□□□ -1.09
PTCD3-212ENST00000477520 TSHZ2Q9NRE2 1034 aa8.27□□□□□ -1.09
PTCD3-212ENST00000477520 AXIN1O15169 862 aa8.26□□□□□ -1.09
PTCD3-212ENST00000477520 WFS1O76024 890 aa8.26□□□□□ -1.09
PTCD3-212ENST00000477520 C11orf95C9JLR9 678 aaPredicted RBP8.25□□□□□ -1.09
PTCD3-212ENST00000477520 OATP04181 439 aa8.25□□□□□ -1.09
PTCD3-212ENST00000477520 NFX1Q12986 1120 aaKnown RBP8.25□□□□□ -1.09
PTCD3-212ENST00000477520 CYP4X1Q8N118 509 aa8.25□□□□□ -1.09
PTCD3-212ENST00000477520 PRDM9Q9NQV7 894 aa8.25□□□□□ -1.09
PTCD3-212ENST00000477520 FUT2Q10981 343 aa8.24□□□□□ -1.09
PTCD3-212ENST00000477520 LCE2CQ5TA81 110 aa8.24□□□□□ -1.09
PTCD3-212ENST00000477520 SEMA3EO15041 775 aa8.23□□□□□ -1.09
PTCD3-212ENST00000477520 CD2BP2O95400 341 aaKnown RBP8.23□□□□□ -1.09
PTCD3-212ENST00000477520 FECHP22830 423 aa8.22□□□□□ -1.09
PTCD3-212ENST00000477520 SMCPP49901 116 aaPredicted RBP8.22□□□□□ -1.09
PTCD3-212ENST00000477520 CTC1Q2NKJ3 1217 aa8.22□□□□□ -1.09
PTCD3-212ENST00000477520 RSPH4AQ5TD94 716 aa8.22□□□□□ -1.09
PTCD3-212ENST00000477520 NLRP7Q8WX94 980 aa8.22□□□□□ -1.09
PTCD3-212ENST00000477520 SLC27A5Q9Y2P5 690 aa8.22□□□□□ -1.09
PTCD3-212ENST00000477520 RDH13Q8NBN7 331 aa8.21□□□□□ -1.1
PTCD3-212ENST00000477520 FMNL1O95466 1100 aaPredicted RBP8.2□□□□□ -1.1
PTCD3-212ENST00000477520 HIC1Q14526 733 aa8.2□□□□□ -1.1
PTCD3-212ENST00000477520 DDX11L8A8MPP1 907 aa8.19□□□□□ -1.1
PTCD3-212ENST00000477520 WIPF1O43516 503 aa8.19□□□□□ -1.1
PTCD3-212ENST00000477520 SNRPBP14678 240 aaKnown RBP8.19□□□□□ -1.1
PTCD3-212ENST00000477520 SMPD1P17405 629 aa8.19□□□□□ -1.1
PTCD3-212ENST00000477520 ATP6V1AP38606 617 aa8.19□□□□□ -1.1
PTCD3-212ENST00000477520 DAXXQ9UER7 740 aaPredicted RBP8.19□□□□□ -1.1
PTCD3-212ENST00000477520 TTC24A2A3L6 582 aaPredicted RBP8.18□□□□□ -1.1
PTCD3-212ENST00000477520 BRICD5Q6PL45 260 aa8.18□□□□□ -1.1
PTCD3-212ENST00000477520 RTN4Q9NQC3 1192 aaKnown RBP8.18□□□□□ -1.1
PTCD3-212ENST00000477520 GCGRP47871 477 aa8.17□□□□□ -1.1
PTCD3-212ENST00000477520 RBM26Q5T8P6 1007 aaKnown RBP8.17□□□□□ -1.1
PTCD3-212ENST00000477520 RNF19BQ6ZMZ0 732 aa8.17□□□□□ -1.1
PTCD3-212ENST00000477520 STK17AQ9UEE5 414 aa8.17□□□□□ -1.1
PTCD3-212ENST00000477520 PHOX2BQ99453 314 aa8.16□□□□□ -1.1
PTCD3-212ENST00000477520 ATP13A2Q9NQ11 1180 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms