RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 ARHGEF40Q8TER5 1519 aa8.6□□□□□ -1.03
CLK1-210ENST00000473565 ZC3H13Q5T200 1668 aaKnown RBP8.6□□□□□ -1.03
CLK1-210ENST00000473565 GTF3C3Q9Y5Q9 886 aa8.6□□□□□ -1.03
CLK1-210ENST00000473565 ARID4BQ4LE39 1312 aaPredicted RBP8.6□□□□□ -1.03
CLK1-210ENST00000473565 MYO5BQ9ULV0 1848 aa8.6□□□□□ -1.03
CLK1-210ENST00000473565 PREX1Q8TCU6 1659 aa8.6□□□□□ -1.03
CLK1-210ENST00000473565 TMEM132EQ6IEE7 984 aa8.59□□□□□ -1.03
CLK1-210ENST00000473565 IQGAP1P46940 1657 aa8.59□□□□□ -1.03
CLK1-210ENST00000473565 ARHGAP31Q2M1Z3 1444 aa8.59□□□□□ -1.03
CLK1-210ENST00000473565 PPLO60437 1756 aa8.59□□□□□ -1.03
CLK1-210ENST00000473565 PIK3C2BO00750 1634 aa8.59□□□□□ -1.03
CLK1-210ENST00000473565 MYOM2P54296 1465 aa8.59□□□□□ -1.03
CLK1-210ENST00000473565 AGLP35573 1532 aa8.58□□□□□ -1.04
CLK1-210ENST00000473565 NEURL4Q96JN8 1562 aa8.58□□□□□ -1.04
CLK1-210ENST00000473565 SCAF11Q99590 1463 aaKnown RBP8.58□□□□□ -1.04
CLK1-210ENST00000473565 REREQ9P2R6 1566 aa8.58□□□□□ -1.04
CLK1-210ENST00000473565 PLPPR3Q6T4P5 718 aa8.58□□□□□ -1.04
CLK1-210ENST00000473565 TRAK1Q9UPV9 953 aa8.57□□□□□ -1.04
CLK1-210ENST00000473565 ERVK-7P63135 1459 aa8.57□□□□□ -1.04
CLK1-210ENST00000473565 TMF1P82094 1093 aa8.57□□□□□ -1.04
CLK1-210ENST00000473565 MRS2Q9HD23 443 aa8.57□□□□□ -1.04
CLK1-210ENST00000473565 NRXN1Q9ULB1 1477 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 STAC3Q96MF2 364 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 NEXMIFQ5QGS0 1516 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 PIK3C2GO75747 1445 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 FAM9BQ8IZU0 186 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 KIAA1210Q9ULL0 1709 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 SENP3-EIF4A1A0A087X0R7 540 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 ESF1Q9H501 851 aaKnown RBP8.56□□□□□ -1.04
CLK1-210ENST00000473565 SLC52A1Q9NWF4 448 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 STAG3Q9UJ98 1225 aa8.56□□□□□ -1.04
CLK1-210ENST00000473565 PANK3Q9H999 370 aa8.55□□□□□ -1.04
CLK1-210ENST00000473565 TMEM131LA2VDJ0 1609 aa8.55□□□□□ -1.04
CLK1-210ENST00000473565 C14orf93Q9H972 538 aaKnown RBP8.54□□□□□ -1.04
CLK1-210ENST00000473565 RPGRIP1LQ68CZ1 1315 aa8.54□□□□□ -1.04
CLK1-210ENST00000473565 CEBPAP49715 358 aaPredicted RBP8.54□□□□□ -1.04
CLK1-210ENST00000473565 HNRNPUQ00839 825 aaKnown RBP eCLIP8.54□□□□□ -1.04
CLK1-210ENST00000473565 SAFB2Q14151 953 aaKnown RBP eCLIP8.54□□□□□ -1.04
CLK1-210ENST00000473565 CC2D1BQ5T0F9 858 aaKnown RBP8.54□□□□□ -1.04
CLK1-210ENST00000473565 STK26Q9P289 416 aa8.54□□□□□ -1.04
CLK1-210ENST00000473565 ZMYM3Q14202 1370 aa8.53□□□□□ -1.04
CLK1-210ENST00000473565 VGFO15240 615 aaPredicted RBP8.53□□□□□ -1.04
CLK1-210ENST00000473565 ADGRB1O14514 1584 aa8.53□□□□□ -1.04
CLK1-210ENST00000473565 EIF3AQ14152 1382 aaKnown RBP8.53□□□□□ -1.04
CLK1-210ENST00000473565 PER1O15534 1290 aaPredicted RBP8.52□□□□□ -1.04
CLK1-210ENST00000473565 PPP6R1Q9UPN7 881 aa8.52□□□□□ -1.05
CLK1-210ENST00000473565 SPATA31D1Q6ZQQ2 1576 aa8.51□□□□□ -1.05
CLK1-210ENST00000473565 CENPJQ9HC77 1338 aaPredicted RBP8.51□□□□□ -1.05
CLK1-210ENST00000473565 SETBP1Q9Y6X0 1596 aa8.5□□□□□ -1.05
CLK1-210ENST00000473565 ASXL1Q8IXJ9 1541 aa8.5□□□□□ -1.05
CLK1-210ENST00000473565 A2ML1A8K2U0 1454 aa8.5□□□□□ -1.05
CLK1-210ENST00000473565 MYOM1P52179 1685 aa8.5□□□□□ -1.05
CLK1-210ENST00000473565 QRICH2Q9H0J4 1663 aa8.49□□□□□ -1.05
CLK1-210ENST00000473565 DNAJC5Q9H3Z4 198 aa8.49□□□□□ -1.05
CLK1-210ENST00000473565 KDM5AP29375 1690 aaKnown RBP8.49□□□□□ -1.05
CLK1-210ENST00000473565 KTN1Q86UP2 1357 aaKnown RBP8.48□□□□□ -1.05
CLK1-210ENST00000473565 TMC1Q8TDI8 760 aa8.48□□□□□ -1.05
CLK1-210ENST00000473565 TNRQ92752 1358 aa8.48□□□□□ -1.05
CLK1-210ENST00000473565 RIMS2Q9UQ26 1411 aa8.48□□□□□ -1.05
CLK1-210ENST00000473565 MYO3AQ8NEV4 1616 aa8.48□□□□□ -1.05
CLK1-210ENST00000473565 ARHGEF28Q8N1W1 1705 aaKnown RBP8.48□□□□□ -1.05
CLK1-210ENST00000473565 CDCA8Q53HL2 280 aa8.47□□□□□ -1.05
CLK1-210ENST00000473565 MYBBP1AQ9BQG0 1328 aaKnown RBP8.47□□□□□ -1.05
CLK1-210ENST00000473565 ZFYVE9O95405 1425 aa8.47□□□□□ -1.05
CLK1-210ENST00000473565 RALBP1Q15311 655 aa8.47□□□□□ -1.05
CLK1-210ENST00000473565 PARD3Q8TEW0 1356 aa8.47□□□□□ -1.05
CLK1-210ENST00000473565 KNSTRNQ9Y448 316 aa8.46□□□□□ -1.05
CLK1-210ENST00000473565 ALKQ9UM73 1620 aa8.46□□□□□ -1.05
CLK1-210ENST00000473565 MINK1Q8N4C8 1332 aaPredicted RBP8.46□□□□□ -1.06
CLK1-210ENST00000473565 SLC12A5Q9H2X9 1139 aa8.46□□□□□ -1.06
CLK1-210ENST00000473565 CABP2Q9NPB3 220 aa8.46□□□□□ -1.06
CLK1-210ENST00000473565 PNISRQ8TF01 805 aaKnown RBP8.46□□□□□ -1.06
CLK1-210ENST00000473565 BCANQ96GW7 911 aa8.46□□□□□ -1.06
CLK1-210ENST00000473565 PRAM1Q96QH2 718 aa8.46□□□□□ -1.06
CLK1-210ENST00000473565 CARD14Q9BXL6 1004 aa8.46□□□□□ -1.06
CLK1-210ENST00000473565 PTPRMP28827 1452 aa8.45□□□□□ -1.06
CLK1-210ENST00000473565 AMER1Q5JTC6 1135 aaPredicted RBP8.45□□□□□ -1.06
CLK1-210ENST00000473565 YTHDC2Q9H6S0 1430 aaKnown RBP8.45□□□□□ -1.06
CLK1-210ENST00000473565 SBNO2Q9Y2G9 1366 aa8.45□□□□□ -1.06
CLK1-210ENST00000473565 FER1L4A9Z1Z3 1794 aa8.45□□□□□ -1.06
CLK1-210ENST00000473565 TULP4Q9NRJ4 1543 aa8.45□□□□□ -1.06
CLK1-210ENST00000473565 WAPLQ7Z5K2 1190 aa8.44□□□□□ -1.06
CLK1-210ENST00000473565 POGKQ9P215 609 aa8.44□□□□□ -1.06
CLK1-210ENST00000473565 C3P01024 1663 aa8.44□□□□□ -1.06
CLK1-210ENST00000473565 NLRP13Q86W25 1043 aa8.44□□□□□ -1.06
CLK1-210ENST00000473565 UBR1Q8IWV7 1749 aa8.43□□□□□ -1.06
CLK1-210ENST00000473565 BRD4O60885 1362 aaPredicted RBP8.43□□□□□ -1.06
CLK1-210ENST00000473565 PLEKHH1Q9ULM0 1364 aa8.43□□□□□ -1.06
CLK1-210ENST00000473565 SALL2Q9Y467 1007 aaPredicted RBP8.43□□□□□ -1.06
CLK1-210ENST00000473565 METP08581 1390 aa8.43□□□□□ -1.06
CLK1-210ENST00000473565 NRXN3Q9Y4C0 1643 aa8.43□□□□□ -1.06
CLK1-210ENST00000473565 LTKP29376 864 aa8.42□□□□□ -1.06
CLK1-210ENST00000473565 SRPK2P78362 688 aaKnown RBP8.42□□□□□ -1.06
CLK1-210ENST00000473565 SETD1AO15047 1707 aaKnown RBP8.42□□□□□ -1.06
CLK1-210ENST00000473565 EVC2Q86UK5 1308 aa8.42□□□□□ -1.06
CLK1-210ENST00000473565 TMEM2Q9UHN6 1383 aa8.42□□□□□ -1.06
CLK1-210ENST00000473565 PPP2R1AP30153 589 aa8.42□□□□□ -1.06
CLK1-210ENST00000473565 TNNT2P45379 298 aaPredicted RBP8.41□□□□□ -1.06
CLK1-210ENST00000473565 TXNDC2Q86VQ3 553 aa8.41□□□□□ -1.06
CLK1-210ENST00000473565 NSD3Q9BZ95 1437 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms