RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SHTN1A0MZ66 631 aa10.89□□□□□ -0.67
COL6A3-210ENST00000473258 GORABQ5T7V8 394 aa10.89□□□□□ -0.67
COL6A3-210ENST00000473258 CLASRPQ8N2M8 674 aaKnown RBP10.89□□□□□ -0.67
COL6A3-210ENST00000473258 CLSTN1O94985 981 aa10.89□□□□□ -0.67
COL6A3-210ENST00000473258 SF3A1Q15459 793 aaKnown RBP10.89□□□□□ -0.67
COL6A3-210ENST00000473258 KNSTRNQ9Y448 316 aa10.89□□□□□ -0.67
COL6A3-210ENST00000473258 TMCO3Q6UWJ1 677 aa10.88□□□□□ -0.67
COL6A3-210ENST00000473258 GBP2P32456 591 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-210ENST00000473258 CLCN1P35523 988 aa10.88□□□□□ -0.67
COL6A3-210ENST00000473258 ZBTB12Q9Y330 459 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-210ENST00000473258 MCTP1Q6DN14 999 aa10.87□□□□□ -0.67
COL6A3-210ENST00000473258 CHMP3Q9Y3E7 222 aa10.87□□□□□ -0.67
COL6A3-210ENST00000473258 NOL10Q9BSC4 688 aaKnown RBP10.87□□□□□ -0.67
COL6A3-210ENST00000473258 RASSF4Q9H2L5 321 aa10.87□□□□□ -0.67
COL6A3-210ENST00000473258 NOL8Q76FK4 1167 aaKnown RBP10.86□□□□□ -0.67
COL6A3-210ENST00000473258 CCDC146Q8IYE0 955 aa10.86□□□□□ -0.67
COL6A3-210ENST00000473258 WDR66Q8TBY9 1149 aa10.86□□□□□ -0.67
COL6A3-210ENST00000473258 NAP1L1P55209 391 aaKnown RBP10.86□□□□□ -0.67
COL6A3-210ENST00000473258 FOXD4L6Q3SYB3 417 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-210ENST00000473258 FOXD4L3Q6VB84 417 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-210ENST00000473258 TXLNBQ8N3L3 684 aa10.86□□□□□ -0.67
COL6A3-210ENST00000473258 ANKRD20A12PQ8NF67 263 aa10.86□□□□□ -0.67
COL6A3-210ENST00000473258 MBD3O95983 291 aa10.85□□□□□ -0.67
COL6A3-210ENST00000473258 MICALCLQ6ZW33 695 aa10.85□□□□□ -0.67
COL6A3-210ENST00000473258 DZIP1Q86YF9 867 aaKnown RBP10.85□□□□□ -0.67
COL6A3-210ENST00000473258 CCDC102AQ96A19 550 aa10.85□□□□□ -0.67
COL6A3-210ENST00000473258 SWAP70Q9UH65 585 aa10.85□□□□□ -0.67
COL6A3-210ENST00000473258 TTC31Q49AM3 519 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-210ENST00000473258 MYCBPQ99417 103 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-210ENST00000473258 KDM2AQ9Y2K7 1162 aa10.85□□□□□ -0.67
COL6A3-210ENST00000473258 SPDYE4A6NLX3 237 aa10.85□□□□□ -0.67
COL6A3-210ENST00000473258 IPO8O15397 1037 aaKnown RBP10.84□□□□□ -0.67
COL6A3-210ENST00000473258 TRIM5Q9C035 493 aa10.84□□□□□ -0.67
COL6A3-210ENST00000473258 MSH5O43196 834 aa10.84□□□□□ -0.67
COL6A3-210ENST00000473258 TSPY26PQ9H489 355 aa10.84□□□□□ -0.67
COL6A3-210ENST00000473258 UBXN4Q92575 508 aa10.84□□□□□ -0.67
COL6A3-210ENST00000473258 SLC26A8Q96RN1 970 aa10.84□□□□□ -0.67
COL6A3-210ENST00000473258 SRPK2P78362 688 aaKnown RBP10.83□□□□□ -0.68
COL6A3-210ENST00000473258 SEPT6Q14141 434 aa10.83□□□□□ -0.68
COL6A3-210ENST00000473258 P3H3Q8IVL6 736 aa10.83□□□□□ -0.68
COL6A3-210ENST00000473258 CCDC94Q9BW85 323 aaPredicted RBP10.83□□□□□ -0.68
COL6A3-210ENST00000473258 PDE3BQ13370 1112 aa10.83□□□□□ -0.68
COL6A3-210ENST00000473258 LRCH2Q5VUJ6 765 aa10.83□□□□□ -0.68
COL6A3-210ENST00000473258 CNPY4Q8N129 248 aa10.83□□□□□ -0.68
COL6A3-210ENST00000473258 LRRCC1Q9C099 1032 aa10.83□□□□□ -0.68
COL6A3-210ENST00000473258 RNF168Q8IYW5 571 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-210ENST00000473258 POLR3GO15318 223 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-210ENST00000473258 SPATA24Q86W54 205 aa10.82□□□□□ -0.68
COL6A3-210ENST00000473258 KRT222Q8N1A0 295 aa10.82□□□□□ -0.68
COL6A3-210ENST00000473258 PRM3Q9NNZ6 103 aa10.82□□□□□ -0.68
COL6A3-210ENST00000473258 DHX8Q14562 1220 aaKnown RBP10.82□□□□□ -0.68
COL6A3-210ENST00000473258 A0A1B0GUA9 196 aa10.82□□□□□ -0.68
COL6A3-210ENST00000473258 CDCA8Q53HL2 280 aa10.82□□□□□ -0.68
COL6A3-210ENST00000473258 IVLP07476 585 aa10.81□□□□□ -0.68
COL6A3-210ENST00000473258 GBP6Q6ZN66 633 aa10.81□□□□□ -0.68
COL6A3-210ENST00000473258 LUZP1Q86V48 1076 aa10.81□□□□□ -0.68
COL6A3-210ENST00000473258 STAG3Q9UJ98 1225 aa10.81□□□□□ -0.68
COL6A3-210ENST00000473258 EZRP15311 586 aaKnown RBP10.8□□□□□ -0.68
COL6A3-210ENST00000473258 FAM114A1Q8IWE2 563 aa10.8□□□□□ -0.68
COL6A3-210ENST00000473258 EXOC6Q8TAG9 804 aa10.8□□□□□ -0.68
COL6A3-210ENST00000473258 BICD2Q8TD16 824 aa10.8□□□□□ -0.68
COL6A3-210ENST00000473258 GBP3Q9H0R5 595 aa10.8□□□□□ -0.68
COL6A3-210ENST00000473258 XPCQ01831 940 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-210ENST00000473258 A0A1B0GUL7 405 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 APBB1O00213 710 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 BMS1Q14692 1282 aaKnown RBP10.79□□□□□ -0.68
COL6A3-210ENST00000473258 AP1ARQ63HQ0 302 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 NUP133Q8WUM0 1156 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 PRIMPOLQ96LW4 560 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 RABEP1Q15276 862 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 SIN3AQ96ST3 1273 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 C11orf95C9JLR9 678 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-210ENST00000473258 H3BQV1 296 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 FILIP1Q7Z7B0 1213 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 ITPRIPQ8IWB1 547 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 PAF1Q8N7H5 531 aa10.79□□□□□ -0.68
COL6A3-210ENST00000473258 KIF2AO00139 706 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-210ENST00000473258 LMAN1P49257 510 aa10.78□□□□□ -0.68
COL6A3-210ENST00000473258 C10orf67Q8IYJ2 551 aa10.78□□□□□ -0.68
COL6A3-210ENST00000473258 HSPA5P11021 654 aaKnown RBP10.78□□□□□ -0.68
COL6A3-210ENST00000473258 MCM5P33992 734 aa10.78□□□□□ -0.68
COL6A3-210ENST00000473258 RNF187Q5TA31 235 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-210ENST00000473258 TCHPQ9BT92 498 aa10.78□□□□□ -0.68
COL6A3-210ENST00000473258 VGFO15240 615 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-210ENST00000473258 SPC24Q8NBT2 197 aa10.78□□□□□ -0.68
COL6A3-210ENST00000473258 RASSF8Q8NHQ8 419 aa10.78□□□□□ -0.68
COL6A3-210ENST00000473258 NAT10Q9H0A0 1025 aaKnown RBP10.78□□□□□ -0.68
COL6A3-210ENST00000473258 SEPT14Q6ZU15 432 aa10.77□□□□□ -0.69
COL6A3-210ENST00000473258 RBM33Q96EV2 1170 aaKnown RBP10.77□□□□□ -0.69
COL6A3-210ENST00000473258 GOLGA6L9A6NEM1 432 aa10.76□□□□□ -0.69
COL6A3-210ENST00000473258 CRACR2AQ9BSW2 395 aa10.76□□□□□ -0.69
COL6A3-210ENST00000473258 MCM4P33991 863 aa10.76□□□□□ -0.69
COL6A3-210ENST00000473258 RRP1P56182 461 aaKnown RBP10.76□□□□□ -0.69
COL6A3-210ENST00000473258 FMNL3Q8IVF7 1028 aa10.76□□□□□ -0.69
COL6A3-210ENST00000473258 HOOK1Q9UJC3 728 aaKnown RBP10.76□□□□□ -0.69
COL6A3-210ENST00000473258 CHMP7Q8WUX9 453 aaPredicted RBP10.75□□□□□ -0.69
COL6A3-210ENST00000473258 POGKQ9P215 609 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 DRC1Q96MC2 740 aa10.75□□□□□ -0.69
COL6A3-210ENST00000473258 FBXO3Q9UK99 471 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms