RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 WDR43Q15061 677 aaKnown RBP eCLIP27.77■■■□□ 2.049e-7■■■□□ 16.4
COL18A1-207ENST00000473212 TRPM2O94759 1503 aa27.77■■■□□ 2.04
COL18A1-207ENST00000473212 DUSP27Q5VZP5 1158 aa27.76■■■□□ 2.03
COL18A1-207ENST00000473212 SPHKAPQ2M3C7 1700 aa27.76■■■□□ 2.03
COL18A1-207ENST00000473212 UGGT1Q9NYU2 1555 aa27.76■■■□□ 2.03
COL18A1-207ENST00000473212 KIF3BO15066 747 aa27.75■■■□□ 2.03
COL18A1-207ENST00000473212 LAS1LQ9Y4W2 734 aaKnown RBP27.75■■■□□ 2.03
COL18A1-207ENST00000473212 SCAF11Q99590 1463 aaKnown RBP27.75■■■□□ 2.03
COL18A1-207ENST00000473212 CFAP70Q5T0N1 1121 aa27.74■■■□□ 2.03
COL18A1-207ENST00000473212 CEP152O94986 1710 aa27.72■■■□□ 2.03
COL18A1-207ENST00000473212 PTPRTO14522 1441 aa27.72■■■□□ 2.03
COL18A1-207ENST00000473212 SPINK5Q9NQ38 1064 aaPredicted RBP27.71■■■□□ 2.03
COL18A1-207ENST00000473212 MYOM1P52179 1685 aa27.7■■■□□ 2.03
COL18A1-207ENST00000473212 ADGRF5Q8IZF2 1346 aa27.7■■■□□ 2.02
COL18A1-207ENST00000473212 ZNF521Q96K83 1311 aa27.69■■■□□ 2.02
COL18A1-207ENST00000473212 ASXL1Q8IXJ9 1541 aa27.68■■■□□ 2.02
COL18A1-207ENST00000473212 SCAPERQ9BY12 1400 aa27.68■■■□□ 2.02
COL18A1-207ENST00000473212 SYNMO15061 1565 aa27.67■■■□□ 2.02
COL18A1-207ENST00000473212 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
COL18A1-207ENST00000473212 UHRF1BP1LA0JNW5 1464 aa27.67■■■□□ 2.02
COL18A1-207ENST00000473212 NEFMP07197 916 aa27.66■■■□□ 2.02
COL18A1-207ENST00000473212 RTEL1-TNFRSF6BF6WH68 1400 aa27.65■■■□□ 2.02
COL18A1-207ENST00000473212 GOLGA2Q08379 1002 aa27.65■■■□□ 2.02
COL18A1-207ENST00000473212 APAF1O14727 1248 aa27.65■■■□□ 2.02
COL18A1-207ENST00000473212 CARD14Q9BXL6 1004 aa27.64■■■□□ 2.02
COL18A1-207ENST00000473212 DMRT2Q9Y5R5 561 aa27.64■■■□□ 2.02
COL18A1-207ENST00000473212 KDM2BQ8NHM5 1336 aa27.64■■■□□ 2.01
COL18A1-207ENST00000473212 DEPDC5O75140 1603 aa27.63■■■□□ 2.01
COL18A1-207ENST00000473212 CDCA8Q53HL2 280 aa27.63■■■□□ 2.01
COL18A1-207ENST00000473212 ATP7AQ04656 1500 aa27.63■■■□□ 2.01
COL18A1-207ENST00000473212 FANCAO15360 1455 aa27.63■■■□□ 2.01
COL18A1-207ENST00000473212 TET3O43151 1660 aa27.62■■■□□ 2.01
COL18A1-207ENST00000473212 SLFN5Q08AF3 891 aa27.6■■■□□ 2.01
COL18A1-207ENST00000473212 ERVK-7P63135 1459 aa27.59■■■□□ 2.01
COL18A1-207ENST00000473212 PIK3C2GO75747 1445 aa27.59■■■□□ 2.01
COL18A1-207ENST00000473212 KANK1Q14678 1352 aa27.58■■■□□ 2.01
COL18A1-207ENST00000473212 CENPQQ7L2Z9 268 aaPredicted RBP27.58■■■□□ 2
COL18A1-207ENST00000473212 DDRGK1Q96HY6 314 aa27.58■■■□□ 2
COL18A1-207ENST00000473212 USP35Q9P2H5 1018 aa27.58■■■□□ 2
COL18A1-207ENST00000473212 ABCA6Q8N139 1617 aa27.57■■■□□ 2
COL18A1-207ENST00000473212 PPM1GO15355 546 aaPredicted RBP27.57■■■□□ 2
COL18A1-207ENST00000473212 BCAR3O75815 825 aa27.57■■■□□ 2
COL18A1-207ENST00000473212 INO80Q9ULG1 1556 aaPredicted RBP27.56■■■□□ 2
COL18A1-207ENST00000473212 EIF3AQ14152 1382 aaKnown RBP27.56■■■□□ 2
COL18A1-207ENST00000473212 VWDEQ8N2E2 1590 aa27.56■■■□□ 2
COL18A1-207ENST00000473212 MROH1Q8NDA8 1641 aa27.56■■■□□ 2
COL18A1-207ENST00000473212 KDM5AP29375 1690 aaKnown RBP27.55■■■□□ 2
COL18A1-207ENST00000473212 ADGRL1O94910 1474 aa27.55■■■□□ 2
COL18A1-207ENST00000473212 CHGAP10645 457 aaKnown RBP27.55■■■□□ 2
COL18A1-207ENST00000473212 TNNT2P45379 298 aaPredicted RBP27.53■■■□□ 2
COL18A1-207ENST00000473212 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.53■■■□□ 2
COL18A1-207ENST00000473212 SLC4A3P48751 1232 aa27.52■■■□□ 2
COL18A1-207ENST00000473212 MAP3K4Q9Y6R4 1608 aa27.52■■■□□ 2
COL18A1-207ENST00000473212 CFAP65Q6ZU64 1925 aaKnown RBP27.51■■□□□ 1.99
COL18A1-207ENST00000473212 ABCA9Q8IUA7 1624 aa27.51■■□□□ 1.99
COL18A1-207ENST00000473212 ARAP3Q8WWN8 1544 aa27.51■■□□□ 1.99
COL18A1-207ENST00000473212 MROH2AA6NES4 1674 aa27.51■■□□□ 1.99
COL18A1-207ENST00000473212 TRMT2AQ8IZ69 625 aaKnown RBP27.5■■□□□ 1.99
COL18A1-207ENST00000473212 STAC3Q96MF2 364 aa27.5■■□□□ 1.99
COL18A1-207ENST00000473212 NPC1L1Q9UHC9 1359 aa27.49■■□□□ 1.99
COL18A1-207ENST00000473212 RGS3P49796 1198 aa27.49■■□□□ 1.99
COL18A1-207ENST00000473212 TRAK1Q9UPV9 953 aa27.48■■□□□ 1.99
COL18A1-207ENST00000473212 FAM161AQ3B820 660 aa27.46■■□□□ 1.99
COL18A1-207ENST00000473212 KIAA1210Q9ULL0 1709 aa27.46■■□□□ 1.99
COL18A1-207ENST00000473212 NOS1P29475 1434 aa27.46■■□□□ 1.99
COL18A1-207ENST00000473212 C8orf34Q49A92 452 aa27.45■■□□□ 1.99
COL18A1-207ENST00000473212 TMEM132EQ6IEE7 984 aa27.45■■□□□ 1.99
COL18A1-207ENST00000473212 NEUROD2Q15784 382 aa27.44■■□□□ 1.98
COL18A1-207ENST00000473212 PPRC1Q5VV67 1664 aaKnown RBP27.44■■□□□ 1.98
COL18A1-207ENST00000473212 SLC12A5Q9H2X9 1139 aa27.44■■□□□ 1.98
COL18A1-207ENST00000473212 SENP3Q9H4L4 574 aaPredicted RBP27.44■■□□□ 1.98
COL18A1-207ENST00000473212 RRP7AQ9Y3A4 280 aaKnown RBP27.43■■□□□ 1.98
COL18A1-207ENST00000473212 MYOM2P54296 1465 aa27.43■■□□□ 1.98
COL18A1-207ENST00000473212 KIF1BO60333 1816 aa27.43■■□□□ 1.98
COL18A1-207ENST00000473212 NKTRP30414 1462 aaKnown RBP27.43■■□□□ 1.98
COL18A1-207ENST00000473212 NUTM2DQ5VT03 806 aaPredicted RBP27.42■■□□□ 1.98
COL18A1-207ENST00000473212 EFCAB6Q5THR3 1501 aa27.42■■□□□ 1.98
COL18A1-207ENST00000473212 KIDINS220Q9ULH0 1771 aa27.4■■□□□ 1.98
COL18A1-207ENST00000473212 DAXXQ9UER7 740 aaPredicted RBP27.4■■□□□ 1.98
COL18A1-207ENST00000473212 ASXL2Q76L83 1435 aa27.4■■□□□ 1.98
COL18A1-207ENST00000473212 GGT6Q6P531 493 aa27.39■■□□□ 1.98
COL18A1-207ENST00000473212 IL27Q8NEV9 243 aa27.39■■□□□ 1.98
COL18A1-207ENST00000473212 CENPJQ9HC77 1338 aaPredicted RBP27.39■■□□□ 1.98
COL18A1-207ENST00000473212 IFT172Q9UG01 1749 aa27.39■■□□□ 1.97
COL18A1-207ENST00000473212 NSD3Q9BZ95 1437 aa27.38■■□□□ 1.97
COL18A1-207ENST00000473212 IGHDP01880 384 aa27.37■■□□□ 1.97
COL18A1-207ENST00000473212 E9PSI1 815 aa27.37■■□□□ 1.97
COL18A1-207ENST00000473212 NFKBIBQ15653 356 aa27.36■■□□□ 1.97
COL18A1-207ENST00000473212 WWC1Q8IX03 1113 aa27.36■■□□□ 1.97
COL18A1-207ENST00000473212 PANK1Q8TE04 598 aa27.36■■□□□ 1.97
COL18A1-207ENST00000473212 MORC1Q86VD1 984 aa27.33■■□□□ 1.97
COL18A1-207ENST00000473212 NRXN1Q9ULB1 1477 aa27.33■■□□□ 1.97
COL18A1-207ENST00000473212 COG6Q9Y2V7 657 aa27.33■■□□□ 1.97
COL18A1-207ENST00000473212 TNNQ9UQP3 1299 aa27.32■■□□□ 1.96
COL18A1-207ENST00000473212 NEURL4Q96JN8 1562 aa27.32■■□□□ 1.96
COL18A1-207ENST00000473212 NPATQ14207 1427 aa27.31■■□□□ 1.96
COL18A1-207ENST00000473212 ADGRB3O60242 1522 aa27.29■■□□□ 1.96
COL18A1-207ENST00000473212 POLR3AO14802 1390 aaPredicted RBP27.29■■□□□ 1.96
COL18A1-207ENST00000473212 FRAT1Q92837 279 aaPredicted RBP27.29■■□□□ 1.96
COL18A1-207ENST00000473212 BCL2L13Q9BXK5 485 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms