RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 APLP1P51693 650 aa12.58□□□□□ -0.4
CD46-213ENST00000471987 TJAP1Q5JTD0 557 aa12.57□□□□□ -0.4
CD46-213ENST00000471987 PXYLP1Q8TE99 480 aa12.57□□□□□ -0.4
CD46-213ENST00000471987 PRR14Q9BWN1 585 aa12.56□□□□□ -0.4
CD46-213ENST00000471987 FECHP22830 423 aa12.55□□□□□ -0.4
CD46-213ENST00000471987 METTL3Q86U44 580 aaKnown RBP12.55□□□□□ -0.4
CD46-213ENST00000471987 MTRQ99707 1265 aa12.55□□□□□ -0.4
CD46-213ENST00000471987 IL21Q9HBE4 155 aa12.55□□□□□ -0.4
CD46-213ENST00000471987 KMT5BQ4FZB7 885 aa12.48□□□□□ -0.41
CD46-213ENST00000471987 COPS2P61201 443 aa12.47□□□□□ -0.41
CD46-213ENST00000471987 ZNF516Q92618 1163 aa12.47□□□□□ -0.41
CD46-213ENST00000471987 PCDHB3Q9Y5E6 796 aa12.47□□□□□ -0.41
CD46-213ENST00000471987 RSPH4AQ5TD94 716 aa12.46□□□□□ -0.41
CD46-213ENST00000471987 CFHP08603 1231 aa12.45□□□□□ -0.42
CD46-213ENST00000471987 SLC10A3P09131 477 aa12.44□□□□□ -0.42
CD46-213ENST00000471987 DAXXQ9UER7 740 aaPredicted RBP12.44□□□□□ -0.42
CD46-213ENST00000471987 ACTN4O43707 911 aaKnown RBP12.43□□□□□ -0.42
CD46-213ENST00000471987 ZPR1O75312 459 aa12.41□□□□□ -0.42
CD46-213ENST00000471987 MAP2K5Q13163 448 aa12.41□□□□□ -0.42
CD46-213ENST00000471987 BLOC1S3Q6QNY0 202 aa12.4□□□□□ -0.42
CD46-213ENST00000471987 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.39□□□□□ -0.43
CD46-213ENST00000471987 PPP1R18Q6NYC8 613 aa12.38□□□□□ -0.43
CD46-213ENST00000471987 NKX2-3Q8TAU0 364 aa12.38□□□□□ -0.43
CD46-213ENST00000471987 PHOX2BQ99453 314 aa12.38□□□□□ -0.43
CD46-213ENST00000471987 NLRP7Q8WX94 980 aa12.37□□□□□ -0.43
CD46-213ENST00000471987 DDX11L8A8MPP1 907 aa12.36□□□□□ -0.43
CD46-213ENST00000471987 IRF6O14896 467 aa12.36□□□□□ -0.43
CD46-213ENST00000471987 GGCXP38435 758 aa12.36□□□□□ -0.43
CD46-213ENST00000471987 SULF1Q8IWU6 871 aa12.36□□□□□ -0.43
CD46-213ENST00000471987 RDH13Q8NBN7 331 aa12.36□□□□□ -0.43
CD46-213ENST00000471987 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.36□□□□□ -0.43
CD46-213ENST00000471987 MINK1Q8N4C8 1332 aaPredicted RBP12.36□□□□□ -0.43
CD46-213ENST00000471987 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
CD46-213ENST00000471987 NR1I2O75469 434 aa12.33□□□□□ -0.44
CD46-213ENST00000471987 IRX2Q9BZI1 471 aaPredicted RBP12.33□□□□□ -0.44
CD46-213ENST00000471987 TMUB1Q9BVT8 246 aa12.32□□□□□ -0.44
CD46-213ENST00000471987 TLL1O43897 1013 aa12.29□□□□□ -0.44
CD46-213ENST00000471987 CCDC102AQ96A19 550 aa12.29□□□□□ -0.44
CD46-213ENST00000471987 GCGRP47871 477 aa12.28□□□□□ -0.44
CD46-213ENST00000471987 PRKD2Q9BZL6 878 aa12.28□□□□□ -0.44
CD46-213ENST00000471987 PUS10Q3MIT2 529 aaKnown RBP12.27□□□□□ -0.45
CD46-213ENST00000471987 SCUBE3Q8IX30 993 aa12.27□□□□□ -0.45
CD46-213ENST00000471987 FUT2Q10981 343 aa12.26□□□□□ -0.45
CD46-213ENST00000471987 V9GY48 417 aaPredicted RBP12.26□□□□□ -0.45
CD46-213ENST00000471987 ADH1BP00325 375 aa12.25□□□□□ -0.45
CD46-213ENST00000471987 ATP6V1AP38606 617 aa12.25□□□□□ -0.45
CD46-213ENST00000471987 MDM2Q00987 491 aaPredicted RBP12.25□□□□□ -0.45
CD46-213ENST00000471987 MORN1Q5T089 497 aa12.23□□□□□ -0.45
CD46-213ENST00000471987 KRI1Q8N9T8 703 aaKnown RBP12.23□□□□□ -0.45
CD46-213ENST00000471987 RNF223E7ERA6 249 aa12.22□□□□□ -0.45
CD46-213ENST00000471987 CD46P15529 392 aa12.22□□□□□ -0.45
CD46-213ENST00000471987 S1PR4O95977 384 aa12.21□□□□□ -0.45
CD46-213ENST00000471987 CLCN1P35523 988 aa12.21□□□□□ -0.45
CD46-213ENST00000471987 GRIPAP1Q4V328 841 aa12.21□□□□□ -0.45
CD46-213ENST00000471987 BARGINQ6ZT62 677 aa12.21□□□□□ -0.45
CD46-213ENST00000471987 ZMYND10O75800 440 aa12.2□□□□□ -0.46
CD46-213ENST00000471987 ZC3H15Q8WU90 426 aaKnown RBP12.2□□□□□ -0.46
CD46-213ENST00000471987 SPSB2Q99619 263 aa12.2□□□□□ -0.46
CD46-213ENST00000471987 SLC6A16Q9GZN6 736 aa12.2□□□□□ -0.46
CD46-213ENST00000471987 GPCPD1Q9NPB8 672 aa12.2□□□□□ -0.46
CD46-213ENST00000471987 ANKLE1Q8NAG6 615 aa12.19□□□□□ -0.46
CD46-213ENST00000471987 SLC27A5Q9Y2P5 690 aa12.18□□□□□ -0.46
CD46-213ENST00000471987 LAPTM4AQ15012 233 aa12.17□□□□□ -0.46
CD46-213ENST00000471987 FMNL1O95466 1100 aaPredicted RBP12.16□□□□□ -0.46
CD46-213ENST00000471987 SALL2Q9Y467 1007 aaPredicted RBP12.16□□□□□ -0.46
CD46-213ENST00000471987 KDM4AO75164 1064 aa12.15□□□□□ -0.46
CD46-213ENST00000471987 THAP11Q96EK4 314 aa12.15□□□□□ -0.46
CD46-213ENST00000471987 PPEF1O14829 653 aaPredicted RBP12.14□□□□□ -0.47
CD46-213ENST00000471987 FAM217BQ9NTX9 383 aaPredicted RBP12.14□□□□□ -0.47
CD46-213ENST00000471987 SLC19A1P41440 591 aa12.13□□□□□ -0.47
CD46-213ENST00000471987 USP46P62068 366 aa12.13□□□□□ -0.47
CD46-213ENST00000471987 GFRA3O60609 400 aa12.12□□□□□ -0.47
CD46-213ENST00000471987 Q3C1V9 767 aa12.11□□□□□ -0.47
CD46-213ENST00000471987 BRICD5Q6PL45 260 aa12.11□□□□□ -0.47
CD46-213ENST00000471987 Q6ZNB5 142 aa12.09□□□□□ -0.47
CD46-213ENST00000471987 TTLL12Q14166 644 aaPredicted RBP12.08□□□□□ -0.48
CD46-213ENST00000471987 AMHR2Q16671 573 aa12.08□□□□□ -0.48
CD46-213ENST00000471987 RNF19BQ6ZMZ0 732 aa12.08□□□□□ -0.48
CD46-213ENST00000471987 FAM160A2Q8N612 972 aaPredicted RBP12.08□□□□□ -0.48
CD46-213ENST00000471987 EMID1Q96A84 441 aaPredicted RBP12.08□□□□□ -0.48
CD46-213ENST00000471987 REPIN1Q9BWE0 567 aaKnown RBP12.08□□□□□ -0.48
CD46-213ENST00000471987 NRG2O14511 850 aaPredicted RBP12.07□□□□□ -0.48
CD46-213ENST00000471987 SPRYD7Q5W111 196 aa12.07□□□□□ -0.48
CD46-213ENST00000471987 HOXA2O43364 376 aa12.06□□□□□ -0.48
CD46-213ENST00000471987 MSS51Q4VC12 460 aa12.06□□□□□ -0.48
CD46-213ENST00000471987 LIAT1Q6ZQX7 453 aa12.06□□□□□ -0.48
CD46-213ENST00000471987 NUTM1Q86Y26 1132 aa12.06□□□□□ -0.48
CD46-213ENST00000471987 PDZRN3Q9UPQ7 1066 aa12.06□□□□□ -0.48
CD46-213ENST00000471987 SSTR3P32745 418 aaPredicted RBP12.05□□□□□ -0.48
CD46-213ENST00000471987 ZNF598Q86UK7 904 aaKnown RBP12.05□□□□□ -0.48
CD46-213ENST00000471987 PLA2G2CQ5R387 149 aa12.03□□□□□ -0.48
CD46-213ENST00000471987 AK7Q96M32 723 aa12.03□□□□□ -0.48
CD46-213ENST00000471987 PRDM9Q9NQV7 894 aa12.03□□□□□ -0.48
CD46-213ENST00000471987 FCF1Q9Y324 198 aaKnown RBP12.03□□□□□ -0.48
CD46-213ENST00000471987 HLA-CQ95604 372 aa12.02□□□□□ -0.49
CD46-213ENST00000471987 USB1Q9BQ65 265 aaKnown RBP12.02□□□□□ -0.49
CD46-213ENST00000471987 ZNF697Q5TEC3 545 aa12.01□□□□□ -0.49
CD46-213ENST00000471987 GIGYF2Q6Y7W6 1299 aaKnown RBP12.01□□□□□ -0.49
CD46-213ENST00000471987 TRIM66O15016 1216 aa11.99□□□□□ -0.49
CD46-213ENST00000471987 SLC24A1O60721 1099 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms