RNA–Protein interactions for RNA: ENST00000471887.1

HDAC9-221, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 446 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-221ENST00000471887 CLCN1P35523 988 aa11.82□□□□□ -0.52
HDAC9-221ENST00000471887 MDM2Q00987 491 aaPredicted RBP11.82□□□□□ -0.52
HDAC9-221ENST00000471887 MMRN1Q13201 1228 aa11.82□□□□□ -0.52
HDAC9-221ENST00000471887 KCTD12Q96CX2 325 aaKnown RBP11.82□□□□□ -0.52
HDAC9-221ENST00000471887 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.82□□□□□ -0.52
HDAC9-221ENST00000471887 TTLL12Q14166 644 aaPredicted RBP11.81□□□□□ -0.52
HDAC9-221ENST00000471887 GPCPD1Q9NPB8 672 aa11.81□□□□□ -0.52
HDAC9-221ENST00000471887 DAXXQ9UER7 740 aaPredicted RBP11.81□□□□□ -0.52
HDAC9-221ENST00000471887 SOWAHBA6NEL2 793 aa11.8□□□□□ -0.52
HDAC9-221ENST00000471887 PDE4DQ08499 809 aa11.8□□□□□ -0.52
HDAC9-221ENST00000471887 SLF2Q8IX21 1173 aa11.8□□□□□ -0.52
HDAC9-221ENST00000471887 RNF166Q96A37 237 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-221ENST00000471887 RNF40O75150 1001 aa11.78□□□□□ -0.52
HDAC9-221ENST00000471887 BCAMP50895 628 aa11.78□□□□□ -0.52
HDAC9-221ENST00000471887 THSD4Q6ZMP0 1018 aa11.78□□□□□ -0.52
HDAC9-221ENST00000471887 SULF1Q8IWU6 871 aa11.77□□□□□ -0.53
HDAC9-221ENST00000471887 PARP9Q8IXQ6 854 aa11.76□□□□□ -0.53
HDAC9-221ENST00000471887 NECTIN2Q92692 538 aa11.76□□□□□ -0.53
HDAC9-221ENST00000471887 TMUB1Q9BVT8 246 aa11.76□□□□□ -0.53
HDAC9-221ENST00000471887 DDX11L8A8MPP1 907 aa11.74□□□□□ -0.53
HDAC9-221ENST00000471887 RSPH4AQ5TD94 716 aa11.74□□□□□ -0.53
HDAC9-221ENST00000471887 REPIN1Q9BWE0 567 aaKnown RBP11.74□□□□□ -0.53
HDAC9-221ENST00000471887 TSR3Q9UJK0 312 aaKnown RBP11.74□□□□□ -0.53
HDAC9-221ENST00000471887 HPS5Q9UPZ3 1129 aa11.74□□□□□ -0.53
HDAC9-221ENST00000471887 PPP4CP60510 307 aa11.73□□□□□ -0.53
HDAC9-221ENST00000471887 GIGYF2Q6Y7W6 1299 aaKnown RBP11.73□□□□□ -0.53
HDAC9-221ENST00000471887 FAM217BQ9NTX9 383 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-221ENST00000471887 RDH13Q8NBN7 331 aa11.71□□□□□ -0.53
HDAC9-221ENST00000471887 SSTR3P32745 418 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-221ENST00000471887 PTPN5P54829 565 aa11.7□□□□□ -0.54
HDAC9-221ENST00000471887 NEUROD2Q15784 382 aa11.7□□□□□ -0.54
HDAC9-221ENST00000471887 SLC10A3P09131 477 aa11.69□□□□□ -0.54
HDAC9-221ENST00000471887 WBP1LQ9NX94 342 aa11.69□□□□□ -0.54
HDAC9-221ENST00000471887 NYAP1Q6ZVC0 841 aa11.68□□□□□ -0.54
HDAC9-221ENST00000471887 KDM4CQ9H3R0 1056 aa11.68□□□□□ -0.54
HDAC9-221ENST00000471887 GPBP1L1Q9HC44 474 aaPredicted RBP11.68□□□□□ -0.54
HDAC9-221ENST00000471887 HCSTQ9UBK5 93 aa11.68□□□□□ -0.54
HDAC9-221ENST00000471887 CD46P15529 392 aa11.67□□□□□ -0.54
HDAC9-221ENST00000471887 BRPF1P55201 1214 aaPredicted RBP11.67□□□□□ -0.54
HDAC9-221ENST00000471887 PRR14Q9BWN1 585 aa11.66□□□□□ -0.54
HDAC9-221ENST00000471887 CFHP08603 1231 aa11.65□□□□□ -0.54
HDAC9-221ENST00000471887 KMT5BQ4FZB7 885 aa11.65□□□□□ -0.54
HDAC9-221ENST00000471887 MS4A1P11836 297 aa11.64□□□□□ -0.55
HDAC9-221ENST00000471887 GCGRP47871 477 aa11.62□□□□□ -0.55
HDAC9-221ENST00000471887 BEGAINQ9BUH8 593 aa11.62□□□□□ -0.55
HDAC9-221ENST00000471887 ACTN4O43707 911 aaKnown RBP11.6□□□□□ -0.55
HDAC9-221ENST00000471887 APLP1P51693 650 aa11.6□□□□□ -0.55
HDAC9-221ENST00000471887 NUTM1Q86Y26 1132 aa11.58□□□□□ -0.56
HDAC9-221ENST00000471887 DDRGK1Q96HY6 314 aa11.58□□□□□ -0.56
HDAC9-221ENST00000471887 KDM4AO75164 1064 aa11.57□□□□□ -0.56
HDAC9-221ENST00000471887 FAM117AQ9C073 453 aa11.56□□□□□ -0.56
HDAC9-221ENST00000471887 USP46P62068 366 aa11.55□□□□□ -0.56
HDAC9-221ENST00000471887 FUT2Q10981 343 aa11.55□□□□□ -0.56
HDAC9-221ENST00000471887 DIXDC1Q155Q3 683 aa11.55□□□□□ -0.56
HDAC9-221ENST00000471887 GRIPAP1Q4V328 841 aa11.55□□□□□ -0.56
HDAC9-221ENST00000471887 PCDHB3Q9Y5E6 796 aa11.55□□□□□ -0.56
HDAC9-221ENST00000471887 SPIRE2Q8WWL2 714 aa11.54□□□□□ -0.56
HDAC9-221ENST00000471887 ATP6V1AP38606 617 aa11.53□□□□□ -0.56
HDAC9-221ENST00000471887 TBC1D2Q9BYX2 928 aa11.51□□□□□ -0.57
HDAC9-221ENST00000471887 HOXA2O43364 376 aa11.5□□□□□ -0.57
HDAC9-221ENST00000471887 IL27Q8NEV9 243 aa11.5□□□□□ -0.57
HDAC9-221ENST00000471887 RSPH6AQ9H0K4 717 aa11.5□□□□□ -0.57
HDAC9-221ENST00000471887 PLEKHG3A1L390 1219 aa11.49□□□□□ -0.57
HDAC9-221ENST00000471887 PUS10Q3MIT2 529 aaKnown RBP11.49□□□□□ -0.57
HDAC9-221ENST00000471887 MTRQ99707 1265 aa11.49□□□□□ -0.57
HDAC9-221ENST00000471887 COPS2P61201 443 aa11.48□□□□□ -0.57
HDAC9-221ENST00000471887 MORN1Q5T089 497 aa11.48□□□□□ -0.57
HDAC9-221ENST00000471887 BLOC1S3Q6QNY0 202 aa11.48□□□□□ -0.57
HDAC9-221ENST00000471887 NR1I2O75469 434 aa11.47□□□□□ -0.57
HDAC9-221ENST00000471887 IL21Q9HBE4 155 aa11.47□□□□□ -0.57
HDAC9-221ENST00000471887 TJAP1Q5JTD0 557 aa11.46□□□□□ -0.57
HDAC9-221ENST00000471887 MOXD2PA6NHM9 499 aa11.45□□□□□ -0.58
HDAC9-221ENST00000471887 MYSM1Q5VVJ2 828 aa11.45□□□□□ -0.58
HDAC9-221ENST00000471887 ITGBL1O95965 494 aaPredicted RBP11.44□□□□□ -0.58
HDAC9-221ENST00000471887 SCUBE3Q8IX30 993 aa11.44□□□□□ -0.58
HDAC9-221ENST00000471887 SLC27A5Q9Y2P5 690 aa11.44□□□□□ -0.58
HDAC9-221ENST00000471887 FDX1P10109 184 aa11.43□□□□□ -0.58
HDAC9-221ENST00000471887 NDUFV2P19404 249 aa11.43□□□□□ -0.58
HDAC9-221ENST00000471887 KCNC4Q03721 635 aa11.43□□□□□ -0.58
HDAC9-221ENST00000471887 SH3D19Q5HYK7 790 aa11.43□□□□□ -0.58
HDAC9-221ENST00000471887 HLA-CQ95604 372 aa11.43□□□□□ -0.58
HDAC9-221ENST00000471887 ZPR1O75312 459 aa11.42□□□□□ -0.58
HDAC9-221ENST00000471887 GJA5P36382 358 aa11.42□□□□□ -0.58
HDAC9-221ENST00000471887 RSBN1LQ6PCB5 846 aaPredicted RBP11.42□□□□□ -0.58
HDAC9-221ENST00000471887 RIC3Q7Z5B4 369 aa11.42□□□□□ -0.58
HDAC9-221ENST00000471887 SPTLC1O15269 473 aa11.41□□□□□ -0.58
HDAC9-221ENST00000471887 CLK2P49760 499 aaKnown RBP11.41□□□□□ -0.58
HDAC9-221ENST00000471887 GUCA2AQ02747 115 aa11.41□□□□□ -0.58
HDAC9-221ENST00000471887 Q3C1V9 767 aa11.41□□□□□ -0.58
HDAC9-221ENST00000471887 SKIV2LQ15477 1246 aaKnown RBP11.4□□□□□ -0.58
HDAC9-221ENST00000471887 GOPCQ9HD26 462 aa11.4□□□□□ -0.58
HDAC9-221ENST00000471887 SALL2Q9Y467 1007 aaPredicted RBP11.4□□□□□ -0.58
HDAC9-221ENST00000471887 ZNF516Q92618 1163 aa11.39□□□□□ -0.59
HDAC9-221ENST00000471887 POLR3EQ9NVU0 708 aa11.39□□□□□ -0.59
HDAC9-221ENST00000471887 FMNL1O95466 1100 aaPredicted RBP11.38□□□□□ -0.59
HDAC9-221ENST00000471887 LIMD1Q9UGP4 676 aa11.38□□□□□ -0.59
HDAC9-221ENST00000471887 TUSC1Q2TAM9 212 aa11.37□□□□□ -0.59
HDAC9-221ENST00000471887 PLA2G2EQ9NZK7 142 aa11.37□□□□□ -0.59
HDAC9-221ENST00000471887 ATP1B4Q9UN42 357 aaPredicted RBP11.37□□□□□ -0.59
HDAC9-221ENST00000471887 PCDHGC3Q9UN70 934 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms