RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 KCNA6P17658 529 aa12.4□□□□□ -0.42
USP48-207ENST00000471752 PROSER2Q86WR7 435 aaPredicted RBP12.4□□□□□ -0.42
USP48-207ENST00000471752 TMEM94Q12767 1356 aa12.4□□□□□ -0.42
USP48-207ENST00000471752 SOCS7O14512 581 aa12.39□□□□□ -0.43
USP48-207ENST00000471752 ROCK1Q13464 1354 aa12.39□□□□□ -0.43
USP48-207ENST00000471752 ZFYVE9O95405 1425 aa12.38□□□□□ -0.43
USP48-207ENST00000471752 RIMS2Q9UQ26 1411 aa12.37□□□□□ -0.43
USP48-207ENST00000471752 MAPK8IP2Q13387 824 aaPredicted RBP12.36□□□□□ -0.43
USP48-207ENST00000471752 ADGRB3O60242 1522 aa12.36□□□□□ -0.43
USP48-207ENST00000471752 XIRP1Q702N8 1843 aaKnown RBP12.35□□□□□ -0.43
USP48-207ENST00000471752 PPP1R15AO75807 674 aaPredicted RBP12.34□□□□□ -0.43
USP48-207ENST00000471752 RGS17Q9UGC6 210 aaPredicted RBP12.34□□□□□ -0.43
USP48-207ENST00000471752 E9PCH4 1651 aa12.34□□□□□ -0.43
USP48-207ENST00000471752 UNC13BO14795 1591 aa12.34□□□□□ -0.43
USP48-207ENST00000471752 RPRD2Q5VT52 1461 aaKnown RBP12.34□□□□□ -0.43
USP48-207ENST00000471752 TMEM131LA2VDJ0 1609 aa12.33□□□□□ -0.43
USP48-207ENST00000471752 ADAMTS13Q76LX8 1427 aa12.33□□□□□ -0.44
USP48-207ENST00000471752 MYO5BQ9ULV0 1848 aa12.32□□□□□ -0.44
USP48-207ENST00000471752 PLEKHG1Q9ULL1 1385 aa12.32□□□□□ -0.44
USP48-207ENST00000471752 TBX22Q9Y458 520 aa12.32□□□□□ -0.44
USP48-207ENST00000471752 MED1Q15648 1581 aaPredicted RBP12.31□□□□□ -0.44
USP48-207ENST00000471752 PTPRUQ92729 1446 aa12.31□□□□□ -0.44
USP48-207ENST00000471752 RRBP1Q9P2E9 1410 aaKnown RBP12.31□□□□□ -0.44
USP48-207ENST00000471752 NAIPQ13075 1403 aa12.3□□□□□ -0.44
USP48-207ENST00000471752 SLAIN2Q9P270 581 aa12.3□□□□□ -0.44
USP48-207ENST00000471752 IQGAP3Q86VI3 1631 aa12.29□□□□□ -0.44
USP48-207ENST00000471752 GCC2Q8IWJ2 1684 aa12.29□□□□□ -0.44
USP48-207ENST00000471752 KDM5AP29375 1690 aaKnown RBP12.29□□□□□ -0.44
USP48-207ENST00000471752 FAM135BQ49AJ0 1406 aa12.28□□□□□ -0.44
USP48-207ENST00000471752 ZNF326Q5BKZ1 582 aaKnown RBP12.28□□□□□ -0.44
USP48-207ENST00000471752 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP48-207ENST00000471752 TRIM52Q96A61 297 aa12.28□□□□□ -0.44
USP48-207ENST00000471752 AMOTL2Q9Y2J4 779 aa12.28□□□□□ -0.44
USP48-207ENST00000471752 HDGFP51858 240 aaKnown RBP12.27□□□□□ -0.45
USP48-207ENST00000471752 METP08581 1390 aa12.26□□□□□ -0.45
USP48-207ENST00000471752 POTEAQ6S8J7 498 aa12.25□□□□□ -0.45
USP48-207ENST00000471752 NWD1Q149M9 1564 aa12.25□□□□□ -0.45
USP48-207ENST00000471752 MSH6P52701 1360 aa12.23□□□□□ -0.45
USP48-207ENST00000471752 C14orf37Q86TY3 774 aa12.23□□□□□ -0.45
USP48-207ENST00000471752 CHD2O14647 1828 aaKnown RBP12.23□□□□□ -0.45
USP48-207ENST00000471752 NKTRP30414 1462 aaKnown RBP12.22□□□□□ -0.45
USP48-207ENST00000471752 DDX17Q92841 729 aaKnown RBP12.22□□□□□ -0.45
USP48-207ENST00000471752 SLC4A1APQ9BWU0 796 aaKnown RBP12.22□□□□□ -0.45
USP48-207ENST00000471752 ROBO1Q9Y6N7 1651 aa12.22□□□□□ -0.45
USP48-207ENST00000471752 C19orf44Q9H6X5 657 aa12.21□□□□□ -0.45
USP48-207ENST00000471752 CLTCL1P53675 1640 aa12.2□□□□□ -0.46
USP48-207ENST00000471752 NRXN3Q9Y4C0 1643 aa12.2□□□□□ -0.46
USP48-207ENST00000471752 HFM1A2PYH4 1435 aa12.2□□□□□ -0.46
USP48-207ENST00000471752 BRINP3Q76B58 766 aa12.19□□□□□ -0.46
USP48-207ENST00000471752 ATF3P18847 181 aa12.18□□□□□ -0.46
USP48-207ENST00000471752 RGL3Q3MIN7 710 aa12.17□□□□□ -0.46
USP48-207ENST00000471752 PIK3R4Q99570 1358 aa12.17□□□□□ -0.46
USP48-207ENST00000471752 NEXMIFQ5QGS0 1516 aa12.16□□□□□ -0.46
USP48-207ENST00000471752 ADGRF5Q8IZF2 1346 aa12.16□□□□□ -0.46
USP48-207ENST00000471752 CADPS2Q86UW7 1296 aa12.16□□□□□ -0.46
USP48-207ENST00000471752 MPHOSPH9Q99550 1183 aa12.16□□□□□ -0.46
USP48-207ENST00000471752 SPHKAPQ2M3C7 1700 aa12.16□□□□□ -0.46
USP48-207ENST00000471752 TRPM2O94759 1503 aa12.16□□□□□ -0.46
USP48-207ENST00000471752 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.15□□□□□ -0.46
USP48-207ENST00000471752 NCOA3Q9Y6Q9 1424 aa12.15□□□□□ -0.46
USP48-207ENST00000471752 ROBO2Q9HCK4 1378 aa12.15□□□□□ -0.46
USP48-207ENST00000471752 SETBP1Q9Y6X0 1596 aa12.14□□□□□ -0.47
USP48-207ENST00000471752 LRP6O75581 1613 aa12.14□□□□□ -0.47
USP48-207ENST00000471752 NUTM2BA6NNL0 878 aaPredicted RBP12.13□□□□□ -0.47
USP48-207ENST00000471752 NUTM2EB1AL46 878 aaPredicted RBP12.13□□□□□ -0.47
USP48-207ENST00000471752 TMEM132EQ6IEE7 984 aa12.13□□□□□ -0.47
USP48-207ENST00000471752 NUTM2AQ8IVF1 878 aaPredicted RBP12.13□□□□□ -0.47
USP48-207ENST00000471752 ORAI2Q96SN7 254 aa12.13□□□□□ -0.47
USP48-207ENST00000471752 JCADQ9P266 1359 aa12.13□□□□□ -0.47
USP48-207ENST00000471752 MST1RQ04912 1400 aa12.12□□□□□ -0.47
USP48-207ENST00000471752 VGFO15240 615 aaPredicted RBP12.12□□□□□ -0.47
USP48-207ENST00000471752 WAPLQ7Z5K2 1190 aa12.12□□□□□ -0.47
USP48-207ENST00000471752 DIP2AQ14689 1571 aa12.12□□□□□ -0.47
USP48-207ENST00000471752 COL16A1Q07092 1604 aaPredicted RBP12.11□□□□□ -0.47
USP48-207ENST00000471752 XRN1Q8IZH2 1706 aaKnown RBP12.11□□□□□ -0.47
USP48-207ENST00000471752 STK26Q9P289 416 aa12.11□□□□□ -0.47
USP48-207ENST00000471752 PHLPP1O60346 1717 aa12.11□□□□□ -0.47
USP48-207ENST00000471752 PPP4R3CPQ6ZMV5 832 aa12.1□□□□□ -0.47
USP48-207ENST00000471752 RPGRIP1LQ68CZ1 1315 aa12.1□□□□□ -0.47
USP48-207ENST00000471752 NUTM2FA1L443 756 aa12.09□□□□□ -0.47
USP48-207ENST00000471752 SPATA31E1Q6ZUB1 1445 aa12.09□□□□□ -0.47
USP48-207ENST00000471752 PLEKHH1Q9ULM0 1364 aa12.08□□□□□ -0.48
USP48-207ENST00000471752 ADGRL3Q9HAR2 1447 aa12.08□□□□□ -0.48
USP48-207ENST00000471752 C1orf167Q5SNV9 1468 aa12.07□□□□□ -0.48
USP48-207ENST00000471752 ASXL1Q8IXJ9 1541 aa12.06□□□□□ -0.48
USP48-207ENST00000471752 XPCQ01831 940 aaPredicted RBP12.06□□□□□ -0.48
USP48-207ENST00000471752 AHDC1Q5TGY3 1603 aaPredicted RBP12.06□□□□□ -0.48
USP48-207ENST00000471752 SETD5Q9C0A6 1442 aa12.05□□□□□ -0.48
USP48-207ENST00000471752 CFAP70Q5T0N1 1121 aa12.05□□□□□ -0.48
USP48-207ENST00000471752 MEX3CQ5U5Q3 659 aaKnown RBP12.05□□□□□ -0.48
USP48-207ENST00000471752 SETD1AO15047 1707 aaKnown RBP12.05□□□□□ -0.48
USP48-207ENST00000471752 RAB3GAP2Q9H2M9 1393 aa12.05□□□□□ -0.48
USP48-207ENST00000471752 KIF1BO60333 1816 aa12.04□□□□□ -0.48
USP48-207ENST00000471752 CCDC144AA2RUR9 1427 aa12.04□□□□□ -0.48
USP48-207ENST00000471752 DCCP43146 1447 aa12.04□□□□□ -0.48
USP48-207ENST00000471752 SPATA31A6Q5VVP1 1343 aa12.04□□□□□ -0.48
USP48-207ENST00000471752 NALCNQ8IZF0 1738 aa12.03□□□□□ -0.48
USP48-207ENST00000471752 ADAMTS2O95450 1211 aa12.03□□□□□ -0.48
USP48-207ENST00000471752 LRRC59Q96AG4 307 aaKnown RBP12.03□□□□□ -0.48
USP48-207ENST00000471752 AFF2P51816 1311 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms