RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 KDM5AP29375 1690 aaKnown RBP13.2□□□□□ -0.3
VPS52-216ENST00000471309 MYO5BQ9ULV0 1848 aa13.2□□□□□ -0.3
VPS52-216ENST00000471309 SETBP1Q9Y6X0 1596 aa13.2□□□□□ -0.3
VPS52-216ENST00000471309 MLECQ14165 292 aa13.19□□□□□ -0.3
VPS52-216ENST00000471309 ARID4BQ4LE39 1312 aaPredicted RBP13.18□□□□□ -0.3
VPS52-216ENST00000471309 PIK3C2GO75747 1445 aa13.18□□□□□ -0.3
VPS52-216ENST00000471309 ZMYM3Q14202 1370 aa13.18□□□□□ -0.3
VPS52-216ENST00000471309 WASHC2AQ641Q2 1341 aa13.17□□□□□ -0.3
VPS52-216ENST00000471309 ZFYVE9O95405 1425 aa13.17□□□□□ -0.3
VPS52-216ENST00000471309 ESF1Q9H501 851 aaKnown RBP13.17□□□□□ -0.3
VPS52-216ENST00000471309 CCDC7Q96M83 1385 aa13.17□□□□□ -0.3
VPS52-216ENST00000471309 C3P01024 1663 aa13.16□□□□□ -0.3
VPS52-216ENST00000471309 IDI1Q13907 227 aa13.16□□□□□ -0.3
VPS52-216ENST00000471309 FBXO31Q5XUX0 539 aaPredicted RBP13.16□□□□□ -0.3
VPS52-216ENST00000471309 SCAF11Q99590 1463 aaKnown RBP13.16□□□□□ -0.3
VPS52-216ENST00000471309 CHGAP10645 457 aaKnown RBP13.15□□□□□ -0.3
VPS52-216ENST00000471309 NBPF1Q3BBV0 1214 aa13.15□□□□□ -0.3
VPS52-216ENST00000471309 MYO3AQ8NEV4 1616 aa13.14□□□□□ -0.31
VPS52-216ENST00000471309 ADGRF5Q8IZF2 1346 aa13.13□□□□□ -0.31
VPS52-216ENST00000471309 ADGRB1O14514 1584 aa13.13□□□□□ -0.31
VPS52-216ENST00000471309 A2ML1A8K2U0 1454 aa13.13□□□□□ -0.31
VPS52-216ENST00000471309 DDX10Q13206 875 aaKnown RBP13.13□□□□□ -0.31
VPS52-216ENST00000471309 KIF7Q2M1P5 1343 aa13.13□□□□□ -0.31
VPS52-216ENST00000471309 NLRP1Q9C000 1473 aa13.12□□□□□ -0.31
VPS52-216ENST00000471309 TNRQ92752 1358 aa13.12□□□□□ -0.31
VPS52-216ENST00000471309 UBR1Q8IWV7 1749 aa13.12□□□□□ -0.31
VPS52-216ENST00000471309 EIF3AQ14152 1382 aaKnown RBP13.11□□□□□ -0.31
VPS52-216ENST00000471309 C11orf95C9JLR9 678 aaPredicted RBP13.11□□□□□ -0.31
VPS52-216ENST00000471309 MIER1Q8N108 512 aa13.11□□□□□ -0.31
VPS52-216ENST00000471309 ADAMTSL3P82987 1691 aa13.1□□□□□ -0.31
VPS52-216ENST00000471309 ST20-MTHFSA0A0A6YYL1 179 aa13.1□□□□□ -0.31
VPS52-216ENST00000471309 VGFO15240 615 aaPredicted RBP13.1□□□□□ -0.31
VPS52-216ENST00000471309 RIMS1Q86UR5 1692 aaKnown RBP13.09□□□□□ -0.31
VPS52-216ENST00000471309 CFAP70Q5T0N1 1121 aa13.08□□□□□ -0.32
VPS52-216ENST00000471309 C14orf93Q9H972 538 aaKnown RBP13.08□□□□□ -0.32
VPS52-216ENST00000471309 ASXL1Q8IXJ9 1541 aa13.08□□□□□ -0.32
VPS52-216ENST00000471309 SETD1AO15047 1707 aaKnown RBP13.07□□□□□ -0.32
VPS52-216ENST00000471309 ARHGEF28Q8N1W1 1705 aaKnown RBP13.07□□□□□ -0.32
VPS52-216ENST00000471309 RIMS2Q9UQ26 1411 aa13.06□□□□□ -0.32
VPS52-216ENST00000471309 TESK2Q96S53 571 aa13.06□□□□□ -0.32
VPS52-216ENST00000471309 STAG3Q9UJ98 1225 aa13.06□□□□□ -0.32
VPS52-216ENST00000471309 ALKQ9UM73 1620 aa13.05□□□□□ -0.32
VPS52-216ENST00000471309 NRXN3Q9Y4C0 1643 aa13.05□□□□□ -0.32
VPS52-216ENST00000471309 QRICH2Q9H0J4 1663 aa13.05□□□□□ -0.32
VPS52-216ENST00000471309 SBNO2Q9Y2G9 1366 aa13.05□□□□□ -0.32
VPS52-216ENST00000471309 ILDR1Q86SU0 546 aaPredicted RBP13.04□□□□□ -0.32
VPS52-216ENST00000471309 DISP3Q9P2K9 1392 aa13.04□□□□□ -0.32
VPS52-216ENST00000471309 ZNF142P52746 1687 aaPredicted RBP13.03□□□□□ -0.32
VPS52-216ENST00000471309 TMF1P82094 1093 aa13.02□□□□□ -0.33
VPS52-216ENST00000471309 TMEM2Q9UHN6 1383 aa13.02□□□□□ -0.33
VPS52-216ENST00000471309 SLIT1O75093 1534 aa13.02□□□□□ -0.33
VPS52-216ENST00000471309 ANP32CO43423 234 aa13.01□□□□□ -0.33
VPS52-216ENST00000471309 SLC24A1O60721 1099 aa13.01□□□□□ -0.33
VPS52-216ENST00000471309 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.01□□□□□ -0.33
VPS52-216ENST00000471309 ARHGAP23Q9P227 1491 aa13.01□□□□□ -0.33
VPS52-216ENST00000471309 CEP170BQ9Y4F5 1589 aaPredicted RBP13.01□□□□□ -0.33
VPS52-216ENST00000471309 MYOM1P52179 1685 aa13.01□□□□□ -0.33
VPS52-216ENST00000471309 KDM4FA0A1W2PPD8 638 aa13□□□□□ -0.33
VPS52-216ENST00000471309 NUTM2DQ5VT03 806 aaPredicted RBP13□□□□□ -0.33
VPS52-216ENST00000471309 PTPRMP28827 1452 aa12.99□□□□□ -0.33
VPS52-216ENST00000471309 CEBPAP49715 358 aaPredicted RBP12.99□□□□□ -0.33
VPS52-216ENST00000471309 KNDC1Q76NI1 1749 aa12.99□□□□□ -0.33
VPS52-216ENST00000471309 DLC1Q96QB1 1528 aa12.98□□□□□ -0.33
VPS52-216ENST00000471309 CENPJQ9HC77 1338 aaPredicted RBP12.98□□□□□ -0.33
VPS52-216ENST00000471309 ADRA2BP18089 450 aa12.98□□□□□ -0.33
VPS52-216ENST00000471309 HDGFP51858 240 aaKnown RBP12.98□□□□□ -0.33
VPS52-216ENST00000471309 YTHDC2Q9H6S0 1430 aaKnown RBP12.97□□□□□ -0.33
VPS52-216ENST00000471309 CCER2I3L3R5 266 aa12.97□□□□□ -0.33
VPS52-216ENST00000471309 CDCA8Q53HL2 280 aa12.97□□□□□ -0.33
VPS52-216ENST00000471309 TMEM132EQ6IEE7 984 aa12.96□□□□□ -0.33
VPS52-216ENST00000471309 POLR3GLQ9BT43 218 aa12.96□□□□□ -0.33
VPS52-216ENST00000471309 PLEKHG1Q9ULL1 1385 aa12.95□□□□□ -0.34
VPS52-216ENST00000471309 DIP2AQ14689 1571 aa12.94□□□□□ -0.34
VPS52-216ENST00000471309 CPS1P31327 1500 aa12.94□□□□□ -0.34
VPS52-216ENST00000471309 TULP4Q9NRJ4 1543 aa12.94□□□□□ -0.34
VPS52-216ENST00000471309 TRAK1Q9UPV9 953 aa12.94□□□□□ -0.34
VPS52-216ENST00000471309 LRPPRCP42704 1394 aaKnown RBP12.94□□□□□ -0.34
VPS52-216ENST00000471309 TECPR2O15040 1411 aa12.93□□□□□ -0.34
VPS52-216ENST00000471309 ADAMTS13Q76LX8 1427 aa12.93□□□□□ -0.34
VPS52-216ENST00000471309 PRKRIP1Q9H875 184 aaPredicted RBP12.92□□□□□ -0.34
VPS52-216ENST00000471309 KTN1Q86UP2 1357 aaKnown RBP12.92□□□□□ -0.34
VPS52-216ENST00000471309 MED14O60244 1454 aa12.91□□□□□ -0.34
VPS52-216ENST00000471309 THEMISQ8N1K5 641 aaPredicted RBP12.91□□□□□ -0.34
VPS52-216ENST00000471309 ABCC11Q96J66 1382 aa12.91□□□□□ -0.34
VPS52-216ENST00000471309 PUS7Q96PZ0 661 aaKnown RBP12.89□□□□□ -0.35
VPS52-216ENST00000471309 EID1Q9Y6B2 187 aa12.89□□□□□ -0.35
VPS52-216ENST00000471309 METP08581 1390 aa12.89□□□□□ -0.35
VPS52-216ENST00000471309 FAM135BQ49AJ0 1406 aa12.88□□□□□ -0.35
VPS52-216ENST00000471309 LTKP29376 864 aa12.88□□□□□ -0.35
VPS52-216ENST00000471309 SETD1BQ9UPS6 1966 aaKnown RBP12.87□□□□□ -0.35
VPS52-216ENST00000471309 TXNDC2Q86VQ3 553 aa12.87□□□□□ -0.35
VPS52-216ENST00000471309 USP32Q8NFA0 1604 aa12.87□□□□□ -0.35
VPS52-216ENST00000471309 EVC2Q86UK5 1308 aa12.87□□□□□ -0.35
VPS52-216ENST00000471309 ADGRB2O60241 1585 aa12.86□□□□□ -0.35
VPS52-216ENST00000471309 XRN1Q8IZH2 1706 aaKnown RBP12.86□□□□□ -0.35
VPS52-216ENST00000471309 PER1O15534 1290 aaPredicted RBP12.86□□□□□ -0.35
VPS52-216ENST00000471309 PRAM1Q96QH2 718 aa12.86□□□□□ -0.35
VPS52-216ENST00000471309 STK26Q9P289 416 aa12.86□□□□□ -0.35
VPS52-216ENST00000471309 PARD3Q8TEW0 1356 aa12.85□□□□□ -0.35
VPS52-216ENST00000471309 NINLQ9Y2I6 1382 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms