RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 ARXQ96QS3 562 aa10.94□□□□□ -0.66
CKS1B-204ENST00000471245 GPCPD1Q9NPB8 672 aa10.94□□□□□ -0.66
CKS1B-204ENST00000471245 PXYLP1Q8TE99 480 aa10.93□□□□□ -0.66
CKS1B-204ENST00000471245 REPIN1Q9BWE0 567 aaKnown RBP10.93□□□□□ -0.66
CKS1B-204ENST00000471245 NUDT18Q6ZVK8 323 aa10.92□□□□□ -0.66
CKS1B-204ENST00000471245 METTL3Q86U44 580 aaKnown RBP10.92□□□□□ -0.66
CKS1B-204ENST00000471245 PNMA3Q9UL41 463 aa10.91□□□□□ -0.66
CKS1B-204ENST00000471245 FAM98CQ17RN3 349 aaKnown RBP10.9□□□□□ -0.66
CKS1B-204ENST00000471245 PHOX2BQ99453 314 aa10.9□□□□□ -0.66
CKS1B-204ENST00000471245 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.89□□□□□ -0.67
CKS1B-204ENST00000471245 MDM2Q00987 491 aaPredicted RBP10.89□□□□□ -0.67
CKS1B-204ENST00000471245 MRPL50Q8N5N7 158 aaKnown RBP10.89□□□□□ -0.67
CKS1B-204ENST00000471245 C3orf80F5H4A9 247 aa10.88□□□□□ -0.67
CKS1B-204ENST00000471245 STAC3Q96MF2 364 aa10.88□□□□□ -0.67
CKS1B-204ENST00000471245 SH3D19Q5HYK7 790 aa10.87□□□□□ -0.67
CKS1B-204ENST00000471245 DNAJB2P25686 324 aa10.86□□□□□ -0.67
CKS1B-204ENST00000471245 MYT1LQ9UL68 1186 aa10.86□□□□□ -0.67
CKS1B-204ENST00000471245 RCCD1A6NED2 376 aa10.85□□□□□ -0.67
CKS1B-204ENST00000471245 FAM161AQ3B820 660 aa10.85□□□□□ -0.67
CKS1B-204ENST00000471245 PCMTD1Q96MG8 357 aaPredicted RBP10.85□□□□□ -0.67
CKS1B-204ENST00000471245 ZMYND15Q9H091 742 aa10.85□□□□□ -0.67
CKS1B-204ENST00000471245 SSTR3P32745 418 aaPredicted RBP10.84□□□□□ -0.67
CKS1B-204ENST00000471245 HDGFP51858 240 aaKnown RBP10.84□□□□□ -0.67
CKS1B-204ENST00000471245 FLIIQ13045 1269 aa10.84□□□□□ -0.67
CKS1B-204ENST00000471245 FAM217BQ9NTX9 383 aaPredicted RBP10.84□□□□□ -0.67
CKS1B-204ENST00000471245 SMAPO00193 183 aa10.83□□□□□ -0.68
CKS1B-204ENST00000471245 ZFRQ96KR1 1074 aaKnown RBP10.83□□□□□ -0.68
CKS1B-204ENST00000471245 RSPH6AQ9H0K4 717 aa10.83□□□□□ -0.68
CKS1B-204ENST00000471245 TMEM134Q9H6X4 195 aa10.83□□□□□ -0.68
CKS1B-204ENST00000471245 SEPT9Q9UHD8 586 aaPredicted RBP10.83□□□□□ -0.68
CKS1B-204ENST00000471245 SUPT5HO00267 1087 aaKnown RBP10.82□□□□□ -0.68
CKS1B-204ENST00000471245 BEGAINQ9BUH8 593 aa10.8□□□□□ -0.68
CKS1B-204ENST00000471245 GOLGA8CPA6NN73 597 aa10.79□□□□□ -0.68
CKS1B-204ENST00000471245 SKIV2LQ15477 1246 aaKnown RBP10.79□□□□□ -0.68
CKS1B-204ENST00000471245 HOMEZQ8IX15 550 aa10.77□□□□□ -0.69
CKS1B-204ENST00000471245 ANKK1Q8NFD2 765 aa10.77□□□□□ -0.69
CKS1B-204ENST00000471245 NECTIN2Q92692 538 aa10.77□□□□□ -0.69
CKS1B-204ENST00000471245 SLC4A3P48751 1232 aa10.76□□□□□ -0.69
CKS1B-204ENST00000471245 NLRP7Q8WX94 980 aa10.76□□□□□ -0.69
CKS1B-204ENST00000471245 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
CKS1B-204ENST00000471245 SWT1Q5T5J6 900 aaKnown RBP10.75□□□□□ -0.69
CKS1B-204ENST00000471245 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
CKS1B-204ENST00000471245 SULF1Q8IWU6 871 aa10.75□□□□□ -0.69
CKS1B-204ENST00000471245 SLF2Q8IX21 1173 aa10.75□□□□□ -0.69
CKS1B-204ENST00000471245 WNT2BQ93097 391 aa10.75□□□□□ -0.69
CKS1B-204ENST00000471245 DIXDC1Q155Q3 683 aa10.74□□□□□ -0.69
CKS1B-204ENST00000471245 SAMD7Q7Z3H4 446 aa10.74□□□□□ -0.69
CKS1B-204ENST00000471245 LRCH3Q96II8 777 aa10.74□□□□□ -0.69
CKS1B-204ENST00000471245 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.74□□□□□ -0.69
CKS1B-204ENST00000471245 MYSM1Q5VVJ2 828 aa10.72□□□□□ -0.69
CKS1B-204ENST00000471245 THSD4Q6ZMP0 1018 aa10.7□□□□□ -0.7
CKS1B-204ENST00000471245 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.7□□□□□ -0.7
CKS1B-204ENST00000471245 CLK2P49760 499 aaKnown RBP10.69□□□□□ -0.7
CKS1B-204ENST00000471245 MCM6Q14566 821 aa10.69□□□□□ -0.7
CKS1B-204ENST00000471245 NYAP1Q6ZVC0 841 aa10.69□□□□□ -0.7
CKS1B-204ENST00000471245 TBC1D2Q9BYX2 928 aa10.69□□□□□ -0.7
CKS1B-204ENST00000471245 TSR3Q9UJK0 312 aaKnown RBP10.69□□□□□ -0.7
CKS1B-204ENST00000471245 A6NJR5 290 aa10.67□□□□□ -0.7
CKS1B-204ENST00000471245 CD46P15529 392 aa10.67□□□□□ -0.7
CKS1B-204ENST00000471245 PROCA1Q8NCQ7 364 aaPredicted RBP10.67□□□□□ -0.7
CKS1B-204ENST00000471245 KCTD12Q96CX2 325 aaKnown RBP10.67□□□□□ -0.7
CKS1B-204ENST00000471245 POLR3EQ9NVU0 708 aa10.67□□□□□ -0.7
CKS1B-204ENST00000471245 PPP4CP60510 307 aa10.66□□□□□ -0.7
CKS1B-204ENST00000471245 DDX11L8A8MPP1 907 aa10.65□□□□□ -0.7
CKS1B-204ENST00000471245 SLC10A3P09131 477 aa10.65□□□□□ -0.7
CKS1B-204ENST00000471245 BCAMP50895 628 aa10.65□□□□□ -0.7
CKS1B-204ENST00000471245 PRR14Q9BWN1 585 aa10.65□□□□□ -0.7
CKS1B-204ENST00000471245 TUSC1Q2TAM9 212 aa10.64□□□□□ -0.71
CKS1B-204ENST00000471245 UBTFP17480 764 aaKnown RBP10.63□□□□□ -0.71
CKS1B-204ENST00000471245 GCGRP47871 477 aa10.63□□□□□ -0.71
CKS1B-204ENST00000471245 HCSTQ9UBK5 93 aa10.63□□□□□ -0.71
CKS1B-204ENST00000471245 HPS5Q9UPZ3 1129 aa10.63□□□□□ -0.71
CKS1B-204ENST00000471245 SPIRE2Q8WWL2 714 aa10.62□□□□□ -0.71
CKS1B-204ENST00000471245 ATP1B4Q9UN42 357 aaPredicted RBP10.62□□□□□ -0.71
CKS1B-204ENST00000471245 BANK1Q8NDB2 785 aa10.61□□□□□ -0.71
CKS1B-204ENST00000471245 SPDYE5A6NIY4 337 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 GJA5P36382 358 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 KMT5BQ4FZB7 885 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 PPP2R2DQ66LE6 453 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 RDH13Q8NBN7 331 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 WBP1LQ9NX94 342 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 RB1CC1Q8TDY2 1594 aa10.6□□□□□ -0.71
CKS1B-204ENST00000471245 SPTLC1O15269 473 aa10.59□□□□□ -0.71
CKS1B-204ENST00000471245 ACTN4O43707 911 aaKnown RBP10.59□□□□□ -0.71
CKS1B-204ENST00000471245 RFC5P40937 340 aa10.59□□□□□ -0.71
CKS1B-204ENST00000471245 RIC3Q7Z5B4 369 aa10.59□□□□□ -0.71
CKS1B-204ENST00000471245 NUTM1Q86Y26 1132 aa10.59□□□□□ -0.71
CKS1B-204ENST00000471245 LIMD1Q9UGP4 676 aa10.59□□□□□ -0.71
CKS1B-204ENST00000471245 RNF40O75150 1001 aa10.58□□□□□ -0.72
CKS1B-204ENST00000471245 USP46P62068 366 aa10.58□□□□□ -0.72
CKS1B-204ENST00000471245 RSBN1LQ6PCB5 846 aaPredicted RBP10.58□□□□□ -0.72
CKS1B-204ENST00000471245 CLUAP1Q96AJ1 413 aa10.58□□□□□ -0.72
CKS1B-204ENST00000471245 C1orf115Q9H7X2 142 aa10.58□□□□□ -0.72
CKS1B-204ENST00000471245 TRAK2O60296 914 aa10.57□□□□□ -0.72
CKS1B-204ENST00000471245 CFHP08603 1231 aa10.57□□□□□ -0.72
CKS1B-204ENST00000471245 TMEM259Q4ZIN3 620 aa10.57□□□□□ -0.72
CKS1B-204ENST00000471245 KDM4AO75164 1064 aa10.56□□□□□ -0.72
CKS1B-204ENST00000471245 PTPN5P54829 565 aa10.56□□□□□ -0.72
CKS1B-204ENST00000471245 GRIPAP1Q4V328 841 aa10.55□□□□□ -0.72
CKS1B-204ENST00000471245 PLA2G2EQ9NZK7 142 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms