RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 PPP4CP60510 307 aa12.76□□□□□ -0.37
PRPF40A-206ENST00000471167 PLA2G2EQ9NZK7 142 aa12.76□□□□□ -0.37
PRPF40A-206ENST00000471167 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.75□□□□□ -0.37
PRPF40A-206ENST00000471167 BARGINQ6ZT62 677 aa12.74□□□□□ -0.37
PRPF40A-206ENST00000471167 MINK1Q8N4C8 1332 aaPredicted RBP12.72□□□□□ -0.37
PRPF40A-206ENST00000471167 CCDC102AQ96A19 550 aa12.72□□□□□ -0.37
PRPF40A-206ENST00000471167 RNF40O75150 1001 aa12.71□□□□□ -0.37
PRPF40A-206ENST00000471167 NYAP1Q6ZVC0 841 aa12.71□□□□□ -0.37
PRPF40A-206ENST00000471167 SLF2Q8IX21 1173 aa12.71□□□□□ -0.37
PRPF40A-206ENST00000471167 ITGBL1O95965 494 aaPredicted RBP12.7□□□□□ -0.38
PRPF40A-206ENST00000471167 HDGFP51858 240 aaKnown RBP12.7□□□□□ -0.38
PRPF40A-206ENST00000471167 TJAP1Q5JTD0 557 aa12.68□□□□□ -0.38
PRPF40A-206ENST00000471167 DAXXQ9UER7 740 aaPredicted RBP12.67□□□□□ -0.38
PRPF40A-206ENST00000471167 BCANQ96GW7 911 aa12.66□□□□□ -0.38
PRPF40A-206ENST00000471167 IFFO2Q5TF58 517 aa12.65□□□□□ -0.38
PRPF40A-206ENST00000471167 TMUB1Q9BVT8 246 aa12.65□□□□□ -0.38
PRPF40A-206ENST00000471167 REPIN1Q9BWE0 567 aaKnown RBP12.65□□□□□ -0.38
PRPF40A-206ENST00000471167 ZNF516Q92618 1163 aa12.63□□□□□ -0.39
PRPF40A-206ENST00000471167 MTRQ99707 1265 aa12.62□□□□□ -0.39
PRPF40A-206ENST00000471167 CFHP08603 1231 aa12.6□□□□□ -0.39
PRPF40A-206ENST00000471167 MDM2Q00987 491 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-206ENST00000471167 DDX11L8A8MPP1 907 aa12.58□□□□□ -0.4
PRPF40A-206ENST00000471167 ACTN4O43707 911 aaKnown RBP12.57□□□□□ -0.4
PRPF40A-206ENST00000471167 KRI1Q8N9T8 703 aaKnown RBP12.57□□□□□ -0.4
PRPF40A-206ENST00000471167 COPS2P61201 443 aa12.56□□□□□ -0.4
PRPF40A-206ENST00000471167 KCNC4Q03721 635 aa12.56□□□□□ -0.4
PRPF40A-206ENST00000471167 BLOC1S3Q6QNY0 202 aa12.56□□□□□ -0.4
PRPF40A-206ENST00000471167 NKX2-3Q8TAU0 364 aa12.56□□□□□ -0.4
PRPF40A-206ENST00000471167 CD46P15529 392 aa12.54□□□□□ -0.4
PRPF40A-206ENST00000471167 IL21Q9HBE4 155 aa12.54□□□□□ -0.4
PRPF40A-206ENST00000471167 A0A0G2JS52 829 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 TRIM66O15016 1216 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 GCGRP47871 477 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 SLC4A3P48751 1232 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 AMHR2Q16671 573 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 NECTIN2Q92692 538 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 SLC24A3Q9HC58 644 aa12.53□□□□□ -0.4
PRPF40A-206ENST00000471167 RDH13Q8NBN7 331 aa12.52□□□□□ -0.41
PRPF40A-206ENST00000471167 FAM217BQ9NTX9 383 aaPredicted RBP12.52□□□□□ -0.41
PRPF40A-206ENST00000471167 PCDHB3Q9Y5E6 796 aa12.52□□□□□ -0.41
PRPF40A-206ENST00000471167 PUS10Q3MIT2 529 aaKnown RBP12.51□□□□□ -0.41
PRPF40A-206ENST00000471167 GPCPD1Q9NPB8 672 aa12.5□□□□□ -0.41
PRPF40A-206ENST00000471167 ZPR1O75312 459 aa12.49□□□□□ -0.41
PRPF40A-206ENST00000471167 FUT2Q10981 343 aa12.49□□□□□ -0.41
PRPF40A-206ENST00000471167 KMT5BQ4FZB7 885 aa12.49□□□□□ -0.41
PRPF40A-206ENST00000471167 SULF1Q8IWU6 871 aa12.48□□□□□ -0.41
PRPF40A-206ENST00000471167 AK7Q96M32 723 aa12.48□□□□□ -0.41
PRPF40A-206ENST00000471167 PRR14Q9BWN1 585 aa12.48□□□□□ -0.41
PRPF40A-206ENST00000471167 CLCN1P35523 988 aa12.47□□□□□ -0.41
PRPF40A-206ENST00000471167 TLL1O43897 1013 aa12.46□□□□□ -0.41
PRPF40A-206ENST00000471167 MORN1Q5T089 497 aa12.46□□□□□ -0.41
PRPF40A-206ENST00000471167 SCUBE3Q8IX30 993 aa12.45□□□□□ -0.42
PRPF40A-206ENST00000471167 PARP9Q8IXQ6 854 aa12.45□□□□□ -0.42
PRPF40A-206ENST00000471167 RSPH4AQ5TD94 716 aa12.44□□□□□ -0.42
PRPF40A-206ENST00000471167 SSTR3P32745 418 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-206ENST00000471167 HLA-CQ95604 372 aa12.43□□□□□ -0.42
PRPF40A-206ENST00000471167 GIGYF2Q6Y7W6 1299 aaKnown RBP12.42□□□□□ -0.42
PRPF40A-206ENST00000471167 THAP11Q96EK4 314 aa12.42□□□□□ -0.42
PRPF40A-206ENST00000471167 SLC27A5Q9Y2P5 690 aa12.42□□□□□ -0.42
PRPF40A-206ENST00000471167 MS4A1P11836 297 aa12.41□□□□□ -0.42
PRPF40A-206ENST00000471167 PPP1R18Q6NYC8 613 aa12.41□□□□□ -0.42
PRPF40A-206ENST00000471167 ATP6V1AP38606 617 aa12.4□□□□□ -0.42
PRPF40A-206ENST00000471167 PDE4DQ08499 809 aa12.4□□□□□ -0.42
PRPF40A-206ENST00000471167 TTLL12Q14166 644 aaPredicted RBP12.39□□□□□ -0.43
PRPF40A-206ENST00000471167 KDM4AO75164 1064 aa12.37□□□□□ -0.43
PRPF40A-206ENST00000471167 NR1I2O75469 434 aa12.36□□□□□ -0.43
PRPF40A-206ENST00000471167 GUCA2AQ02747 115 aa12.35□□□□□ -0.43
PRPF40A-206ENST00000471167 FAM160A2Q8N612 972 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-206ENST00000471167 EMID1Q96A84 441 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-206ENST00000471167 HOXA2O43364 376 aa12.34□□□□□ -0.43
PRPF40A-206ENST00000471167 BRICD5Q6PL45 260 aa12.34□□□□□ -0.43
PRPF40A-206ENST00000471167 RNF19BQ6ZMZ0 732 aa12.34□□□□□ -0.43
PRPF40A-206ENST00000471167 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.34□□□□□ -0.43
PRPF40A-206ENST00000471167 ADH1BP00325 375 aa12.33□□□□□ -0.44
PRPF40A-206ENST00000471167 SPIRE2Q8WWL2 714 aa12.33□□□□□ -0.44
PRPF40A-206ENST00000471167 RNF223E7ERA6 249 aa12.31□□□□□ -0.44
PRPF40A-206ENST00000471167 PPEF1O14829 653 aaPredicted RBP12.31□□□□□ -0.44
PRPF40A-206ENST00000471167 S1PR4O95977 384 aa12.31□□□□□ -0.44
PRPF40A-206ENST00000471167 SPSB2Q99619 263 aa12.31□□□□□ -0.44
PRPF40A-206ENST00000471167 BEGAINQ9BUH8 593 aa12.31□□□□□ -0.44
PRPF40A-206ENST00000471167 PCDHGC3Q9UN70 934 aa12.31□□□□□ -0.44
PRPF40A-206ENST00000471167 SALL2Q9Y467 1007 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-206ENST00000471167 RGS20O76081 388 aa12.29□□□□□ -0.44
PRPF40A-206ENST00000471167 USP46P62068 366 aa12.29□□□□□ -0.44
PRPF40A-206ENST00000471167 NDUFV2P19404 249 aa12.28□□□□□ -0.44
PRPF40A-206ENST00000471167 GPBP1L1Q9HC44 474 aaPredicted RBP12.28□□□□□ -0.44
PRPF40A-206ENST00000471167 MOXD2PA6NHM9 499 aa12.27□□□□□ -0.45
PRPF40A-206ENST00000471167 SYMPKQ92797 1274 aaKnown RBP12.27□□□□□ -0.45
PRPF40A-206ENST00000471167 PRDM9Q9NQV7 894 aa12.27□□□□□ -0.45
PRPF40A-206ENST00000471167 PLA2G2CQ5R387 149 aa12.26□□□□□ -0.45
PRPF40A-206ENST00000471167 FMNL1O95466 1100 aaPredicted RBP12.25□□□□□ -0.45
PRPF40A-206ENST00000471167 NUTM1Q86Y26 1132 aa12.25□□□□□ -0.45
PRPF40A-206ENST00000471167 SLC6A16Q9GZN6 736 aa12.25□□□□□ -0.45
PRPF40A-206ENST00000471167 GRIPAP1Q4V328 841 aa12.24□□□□□ -0.45
PRPF40A-206ENST00000471167 TBC1D2Q9BYX2 928 aa12.24□□□□□ -0.45
PRPF40A-206ENST00000471167 TPRNQ4KMQ1 711 aa12.22□□□□□ -0.45
PRPF40A-206ENST00000471167 PRKD2Q9BZL6 878 aa12.22□□□□□ -0.45
PRPF40A-206ENST00000471167 FDX1P10109 184 aa12.2□□□□□ -0.46
PRPF40A-206ENST00000471167 MSS51Q4VC12 460 aa12.2□□□□□ -0.46
PRPF40A-206ENST00000471167 LIAT1Q6ZQX7 453 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms