RNA–Protein interactions for RNA: ENST00000470994.1

GPNMB-208, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 538 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-208ENST00000470994 NPDC1Q9NQX5 325 aaPredicted RBP11.56□□□□□ -0.56
GPNMB-208ENST00000470994 PCDHB3Q9Y5E6 796 aa11.56□□□□□ -0.56
GPNMB-208ENST00000470994 SCRIBQ14160 1630 aa11.55□□□□□ -0.56
GPNMB-208ENST00000470994 AMER1Q5JTC6 1135 aaPredicted RBP11.54□□□□□ -0.56
GPNMB-208ENST00000470994 EYA1Q99502 592 aa11.54□□□□□ -0.56
GPNMB-208ENST00000470994 CECR2Q9BXF3 1484 aa11.54□□□□□ -0.56
GPNMB-208ENST00000470994 DNAJB2P25686 324 aa11.51□□□□□ -0.57
GPNMB-208ENST00000470994 ZNF787Q6DD87 383 aa11.51□□□□□ -0.57
GPNMB-208ENST00000470994 RBM46Q8TBY0 533 aaKnown RBP11.5□□□□□ -0.57
GPNMB-208ENST00000470994 KMT5BQ4FZB7 885 aa11.49□□□□□ -0.57
GPNMB-208ENST00000470994 SHROOM4Q9ULL8 1493 aa11.49□□□□□ -0.57
GPNMB-208ENST00000470994 SLC19A1P41440 591 aa11.48□□□□□ -0.57
GPNMB-208ENST00000470994 ARHGEF1Q92888 912 aaKnown RBP11.48□□□□□ -0.57
GPNMB-208ENST00000470994 BLOC1S3Q6QNY0 202 aa11.47□□□□□ -0.57
GPNMB-208ENST00000470994 CC2D2AQ9P2K1 1620 aa11.46□□□□□ -0.57
GPNMB-208ENST00000470994 RNF223E7ERA6 249 aa11.45□□□□□ -0.58
GPNMB-208ENST00000470994 PKDCCQ504Y2 493 aa11.44□□□□□ -0.58
GPNMB-208ENST00000470994 ANKLE1Q8NAG6 615 aa11.44□□□□□ -0.58
GPNMB-208ENST00000470994 TMEM134Q9H6X4 195 aa11.44□□□□□ -0.58
GPNMB-208ENST00000470994 PTGDRQ13258 359 aa11.43□□□□□ -0.58
GPNMB-208ENST00000470994 EIF4G1Q04637 1599 aaKnown RBP11.42□□□□□ -0.58
GPNMB-208ENST00000470994 ACTN4O43707 911 aaKnown RBP11.42□□□□□ -0.58
GPNMB-208ENST00000470994 MLLT3P42568 568 aaPredicted RBP11.41□□□□□ -0.58
GPNMB-208ENST00000470994 ADGRG1Q9Y653 693 aa11.41□□□□□ -0.58
GPNMB-208ENST00000470994 TLL1O43897 1013 aa11.4□□□□□ -0.58
GPNMB-208ENST00000470994 DGAT1O75907 488 aa11.4□□□□□ -0.58
GPNMB-208ENST00000470994 CFHP08603 1231 aa11.4□□□□□ -0.58
GPNMB-208ENST00000470994 SPRYD7Q5W111 196 aa11.4□□□□□ -0.58
GPNMB-208ENST00000470994 ZNF598Q86UK7 904 aaKnown RBP11.4□□□□□ -0.58
GPNMB-208ENST00000470994 NR1I2O75469 434 aa11.39□□□□□ -0.59
GPNMB-208ENST00000470994 PRR20EP86478 221 aa11.39□□□□□ -0.59
GPNMB-208ENST00000470994 PRR20CP86479 221 aa11.39□□□□□ -0.59
GPNMB-208ENST00000470994 PRR20DP86480 221 aa11.39□□□□□ -0.59
GPNMB-208ENST00000470994 PRR20BP86481 221 aa11.39□□□□□ -0.59
GPNMB-208ENST00000470994 PRR20AP86496 221 aa11.39□□□□□ -0.59
GPNMB-208ENST00000470994 NUTM2FA1L443 756 aa11.38□□□□□ -0.59
GPNMB-208ENST00000470994 RCCD1A6NED2 376 aa11.38□□□□□ -0.59
GPNMB-208ENST00000470994 S1PR4O95977 384 aa11.37□□□□□ -0.59
GPNMB-208ENST00000470994 ADH1BP00325 375 aa11.37□□□□□ -0.59
GPNMB-208ENST00000470994 TRIM67Q6ZTA4 783 aa11.37□□□□□ -0.59
GPNMB-208ENST00000470994 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.36□□□□□ -0.59
GPNMB-208ENST00000470994 RSPH4AQ5TD94 716 aa11.36□□□□□ -0.59
GPNMB-208ENST00000470994 ZNF697Q5TEC3 545 aa11.35□□□□□ -0.59
GPNMB-208ENST00000470994 KCNV2Q8TDN2 545 aa11.35□□□□□ -0.59
GPNMB-208ENST00000470994 FCHSD2O94868 740 aa11.34□□□□□ -0.59
GPNMB-208ENST00000470994 ZNF775Q96BV0 537 aaPredicted RBP11.34□□□□□ -0.59
GPNMB-208ENST00000470994 SLC6A16Q9GZN6 736 aa11.33□□□□□ -0.6
GPNMB-208ENST00000470994 OATP04181 439 aa11.32□□□□□ -0.6
GPNMB-208ENST00000470994 MYT1Q01538 1121 aa11.32□□□□□ -0.6
GPNMB-208ENST00000470994 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
GPNMB-208ENST00000470994 EMID1Q96A84 441 aaPredicted RBP11.32□□□□□ -0.6
GPNMB-208ENST00000470994 FAM187AA6NFU0 413 aa11.31□□□□□ -0.6
GPNMB-208ENST00000470994 PPEF1O14829 653 aaPredicted RBP11.31□□□□□ -0.6
GPNMB-208ENST00000470994 RTN4Q9NQC3 1192 aaKnown RBP11.31□□□□□ -0.6
GPNMB-208ENST00000470994 LIAT1Q6ZQX7 453 aa11.3□□□□□ -0.6
GPNMB-208ENST00000470994 TNFRSF10AO00220 468 aa11.28□□□□□ -0.6
GPNMB-208ENST00000470994 SLC10A3P09131 477 aa11.28□□□□□ -0.6
GPNMB-208ENST00000470994 FAM161AQ3B820 660 aa11.28□□□□□ -0.6
GPNMB-208ENST00000470994 LMOD2Q6P5Q4 547 aa11.28□□□□□ -0.6
GPNMB-208ENST00000470994 GDF9O60383 454 aa11.26□□□□□ -0.61
GPNMB-208ENST00000470994 TSHZ2Q9NRE2 1034 aa11.26□□□□□ -0.61
GPNMB-208ENST00000470994 SCUBE3Q8IX30 993 aa11.25□□□□□ -0.61
GPNMB-208ENST00000470994 PXYLP1Q8TE99 480 aa11.25□□□□□ -0.61
GPNMB-208ENST00000470994 SPSB2Q99619 263 aa11.24□□□□□ -0.61
GPNMB-208ENST00000470994 HIC1Q14526 733 aa11.22□□□□□ -0.61
GPNMB-208ENST00000470994 RPIAP49247 311 aa11.2□□□□□ -0.62
GPNMB-208ENST00000470994 PUS10Q3MIT2 529 aaKnown RBP11.2□□□□□ -0.62
GPNMB-208ENST00000470994 METTL3Q86U44 580 aaKnown RBP11.2□□□□□ -0.62
GPNMB-208ENST00000470994 FOXC1Q12948 553 aa11.19□□□□□ -0.62
GPNMB-208ENST00000470994 PLA2G2CQ5R387 149 aa11.19□□□□□ -0.62
GPNMB-208ENST00000470994 RDH13Q8NBN7 331 aa11.18□□□□□ -0.62
GPNMB-208ENST00000470994 CD2BP2O95400 341 aaKnown RBP11.17□□□□□ -0.62
GPNMB-208ENST00000470994 SMYD5Q6GMV2 418 aa11.17□□□□□ -0.62
GPNMB-208ENST00000470994 POTECB2RU33 542 aa11.16□□□□□ -0.62
GPNMB-208ENST00000470994 SEMA3EO15041 775 aa11.16□□□□□ -0.62
GPNMB-208ENST00000470994 AAASQ9NRG9 546 aa11.16□□□□□ -0.62
GPNMB-208ENST00000470994 ST8SIA5O15466 376 aa11.15□□□□□ -0.62
GPNMB-208ENST00000470994 PKD2L1Q9P0L9 805 aa11.15□□□□□ -0.62
GPNMB-208ENST00000470994 DAXXQ9UER7 740 aaPredicted RBP11.15□□□□□ -0.62
GPNMB-208ENST00000470994 CRIPAKQ8N1N5 446 aa11.14□□□□□ -0.63
GPNMB-208ENST00000470994 FMNL1O95466 1100 aaPredicted RBP11.13□□□□□ -0.63
GPNMB-208ENST00000470994 SULF1Q8IWU6 871 aa11.13□□□□□ -0.63
GPNMB-208ENST00000470994 CYP4X1Q8N118 509 aa11.13□□□□□ -0.63
GPNMB-208ENST00000470994 FCF1Q9Y324 198 aaKnown RBP11.13□□□□□ -0.63
GPNMB-208ENST00000470994 GNPATO15228 680 aa11.12□□□□□ -0.63
GPNMB-208ENST00000470994 ATP6V1AP38606 617 aa11.12□□□□□ -0.63
GPNMB-208ENST00000470994 MORN1Q5T089 497 aa11.12□□□□□ -0.63
GPNMB-208ENST00000470994 DDX11L8A8MPP1 907 aa11.11□□□□□ -0.63
GPNMB-208ENST00000470994 TREML4Q6UXN2 200 aa11.11□□□□□ -0.63
GPNMB-208ENST00000470994 NCAPD3P42695 1498 aa11.11□□□□□ -0.63
GPNMB-208ENST00000470994 FUT2Q10981 343 aa11.1□□□□□ -0.63
GPNMB-208ENST00000470994 CTC1Q2NKJ3 1217 aa11.1□□□□□ -0.63
GPNMB-208ENST00000470994 ERCC6Q03468 1493 aa11.09□□□□□ -0.63
GPNMB-208ENST00000470994 ZBTB24O43167 697 aaPredicted RBP11.09□□□□□ -0.63
GPNMB-208ENST00000470994 GRIPAP1Q4V328 841 aa11.09□□□□□ -0.63
GPNMB-208ENST00000470994 SALL2Q9Y467 1007 aaPredicted RBP11.09□□□□□ -0.63
GPNMB-208ENST00000470994 AXIN1O15169 862 aa11.08□□□□□ -0.64
GPNMB-208ENST00000470994 AVPP01185 164 aa11.08□□□□□ -0.64
GPNMB-208ENST00000470994 THAP11Q96EK4 314 aa11.08□□□□□ -0.64
GPNMB-208ENST00000470994 TOR4AQ9NXH8 423 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms