RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 MADDQ8WXG6 1647 aa23.28■■□□□ 1.32
SMARCD3-206ENST00000470588 IFT172Q9UG01 1749 aa23.27■■□□□ 1.32
SMARCD3-206ENST00000470588 MLECQ14165 292 aa23.27■■□□□ 1.32
SMARCD3-206ENST00000470588 MYOM2P54296 1465 aa23.25■■□□□ 1.31
SMARCD3-206ENST00000470588 CHGAP10645 457 aaKnown RBP23.25■■□□□ 1.31
SMARCD3-206ENST00000470588 SLC52A1Q9NWF4 448 aa23.23■■□□□ 1.31
SMARCD3-206ENST00000470588 ERVK-7P63135 1459 aa23.22■■□□□ 1.31
SMARCD3-206ENST00000470588 KIAA1210Q9ULL0 1709 aa23.22■■□□□ 1.31
SMARCD3-206ENST00000470588 TESK2Q96S53 571 aa23.22■■□□□ 1.31
SMARCD3-206ENST00000470588 RPGRIP1LQ68CZ1 1315 aa23.2■■□□□ 1.31
SMARCD3-206ENST00000470588 PPLO60437 1756 aa23.2■■□□□ 1.3
SMARCD3-206ENST00000470588 CCDC184Q52MB2 194 aa23.19■■□□□ 1.3
SMARCD3-206ENST00000470588 MRS2Q9HD23 443 aa23.19■■□□□ 1.3
SMARCD3-206ENST00000470588 TMF1P82094 1093 aa23.18■■□□□ 1.3
SMARCD3-206ENST00000470588 SPATA31D1Q6ZQQ2 1576 aa23.17■■□□□ 1.3
SMARCD3-206ENST00000470588 KTN1Q86UP2 1357 aaKnown RBP23.16■■□□□ 1.3
SMARCD3-206ENST00000470588 HNRNPUQ00839 825 aaKnown RBP eCLIP23.14■■□□□ 1.29
SMARCD3-206ENST00000470588 SCAF11Q99590 1463 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-206ENST00000470588 IDI1Q13907 227 aa23.13■■□□□ 1.29
SMARCD3-206ENST00000470588 NRXN1Q9ULB1 1477 aa23.13■■□□□ 1.29
SMARCD3-206ENST00000470588 ZMYM3Q14202 1370 aa23.12■■□□□ 1.29
SMARCD3-206ENST00000470588 TMEM131LA2VDJ0 1609 aa23.12■■□□□ 1.29
SMARCD3-206ENST00000470588 IQGAP1P46940 1657 aa23.12■■□□□ 1.29
SMARCD3-206ENST00000470588 RALBP1Q15311 655 aa23.12■■□□□ 1.29
SMARCD3-206ENST00000470588 FBXO31Q5XUX0 539 aaPredicted RBP23.12■■□□□ 1.29
SMARCD3-206ENST00000470588 DISP3Q9P2K9 1392 aa23.11■■□□□ 1.29
SMARCD3-206ENST00000470588 MYO5BQ9ULV0 1848 aa23.1■■□□□ 1.29
SMARCD3-206ENST00000470588 SLC24A1O60721 1099 aa23.09■■□□□ 1.29
SMARCD3-206ENST00000470588 NEXMIFQ5QGS0 1516 aa23.09■■□□□ 1.29
SMARCD3-206ENST00000470588 FAM9BQ8IZU0 186 aa23.09■■□□□ 1.29
SMARCD3-206ENST00000470588 ADGRF5Q8IZF2 1346 aa23.09■■□□□ 1.29
SMARCD3-206ENST00000470588 FER1L4A9Z1Z3 1794 aa23.08■■□□□ 1.29
SMARCD3-206ENST00000470588 CDCA8Q53HL2 280 aa23.08■■□□□ 1.29
SMARCD3-206ENST00000470588 STAG3Q9UJ98 1225 aa23.08■■□□□ 1.29
SMARCD3-206ENST00000470588 EIF3AQ14152 1382 aaKnown RBP23.07■■□□□ 1.28
SMARCD3-206ENST00000470588 VGFO15240 615 aaPredicted RBP23.07■■□□□ 1.28
SMARCD3-206ENST00000470588 PER1O15534 1290 aaPredicted RBP23.06■■□□□ 1.28
SMARCD3-206ENST00000470588 CFAP70Q5T0N1 1121 aa23.06■■□□□ 1.28
SMARCD3-206ENST00000470588 PIK3C2GO75747 1445 aa23.05■■□□□ 1.28
SMARCD3-206ENST00000470588 SETBP1Q9Y6X0 1596 aa23.04■■□□□ 1.28
SMARCD3-206ENST00000470588 SUPT16HQ9Y5B9 1047 aaKnown RBP23.04■■□□□ 1.28
SMARCD3-206ENST00000470588 ZFYVE9O95405 1425 aa23.03■■□□□ 1.28
SMARCD3-206ENST00000470588 MYBBP1AQ9BQG0 1328 aaKnown RBP23.02■■□□□ 1.28
SMARCD3-206ENST00000470588 TNRQ92752 1358 aa23.02■■□□□ 1.28
SMARCD3-206ENST00000470588 CNGB1Q14028 1251 aaPredicted RBP23.01■■□□□ 1.27
SMARCD3-206ENST00000470588 TMC1Q8TDI8 760 aa23.01■■□□□ 1.27
SMARCD3-206ENST00000470588 PANK3Q9H999 370 aa23.01■■□□□ 1.27
SMARCD3-206ENST00000470588 BRD4O60885 1362 aaPredicted RBP23.01■■□□□ 1.27
SMARCD3-206ENST00000470588 C14orf93Q9H972 538 aaKnown RBP22.99■■□□□ 1.27
SMARCD3-206ENST00000470588 C3P01024 1663 aa22.99■■□□□ 1.27
SMARCD3-206ENST00000470588 KDM5AP29375 1690 aaKnown RBP22.99■■□□□ 1.27
SMARCD3-206ENST00000470588 PNISRQ8TF01 805 aaKnown RBP22.98■■□□□ 1.27
SMARCD3-206ENST00000470588 ZBED9Q6R2W3 1325 aa22.98■■□□□ 1.27
SMARCD3-206ENST00000470588 A2ML1A8K2U0 1454 aa22.97■■□□□ 1.27
SMARCD3-206ENST00000470588 PARD3Q8TEW0 1356 aa22.97■■□□□ 1.27
SMARCD3-206ENST00000470588 NEFLP07196 543 aa22.94■■□□□ 1.26
SMARCD3-206ENST00000470588 NLRP1Q9C000 1473 aa22.93■■□□□ 1.26
SMARCD3-206ENST00000470588 NUTM2DQ5VT03 806 aaPredicted RBP22.93■■□□□ 1.26
SMARCD3-206ENST00000470588 NLRP13Q86W25 1043 aa22.93■■□□□ 1.26
SMARCD3-206ENST00000470588 RIMS2Q9UQ26 1411 aa22.92■■□□□ 1.26
SMARCD3-206ENST00000470588 MYO3AQ8NEV4 1616 aa22.92■■□□□ 1.26
SMARCD3-206ENST00000470588 ADGRB1O14514 1584 aa22.91■■□□□ 1.26
SMARCD3-206ENST00000470588 HDGFP51858 240 aaKnown RBP22.91■■□□□ 1.26
SMARCD3-206ENST00000470588 UBR1Q8IWV7 1749 aa22.9■■□□□ 1.26
SMARCD3-206ENST00000470588 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.9■■□□□ 1.26
SMARCD3-206ENST00000470588 SBNO2Q9Y2G9 1366 aa22.9■■□□□ 1.26
SMARCD3-206ENST00000470588 FKBP8Q14318 412 aa22.89■■□□□ 1.26
SMARCD3-206ENST00000470588 RIMS1Q86UR5 1692 aaKnown RBP22.88■■□□□ 1.25
SMARCD3-206ENST00000470588 LRPPRCP42704 1394 aaKnown RBP22.88■■□□□ 1.25
SMARCD3-206ENST00000470588 KNSTRNQ9Y448 316 aa22.88■■□□□ 1.25
SMARCD3-206ENST00000470588 CENPJQ9HC77 1338 aaPredicted RBP22.86■■□□□ 1.25
SMARCD3-206ENST00000470588 CC2D1BQ5T0F9 858 aaKnown RBP22.86■■□□□ 1.25
SMARCD3-206ENST00000470588 CEBPAP49715 358 aaPredicted RBP22.85■■□□□ 1.25
SMARCD3-206ENST00000470588 ADAMTSL3P82987 1691 aa22.83■■□□□ 1.25
SMARCD3-206ENST00000470588 ALKQ9UM73 1620 aa22.83■■□□□ 1.25
SMARCD3-206ENST00000470588 TRAK1Q9UPV9 953 aa22.83■■□□□ 1.24
SMARCD3-206ENST00000470588 QRICH2Q9H0J4 1663 aa22.83■■□□□ 1.24
SMARCD3-206ENST00000470588 TMEM132EQ6IEE7 984 aa22.82■■□□□ 1.24
SMARCD3-206ENST00000470588 NPC1L1Q9UHC9 1359 aa22.82■■□□□ 1.24
SMARCD3-206ENST00000470588 ARHGEF28Q8N1W1 1705 aaKnown RBP22.82■■□□□ 1.24
SMARCD3-206ENST00000470588 PLPPR3Q6T4P5 718 aa22.81■■□□□ 1.24
SMARCD3-206ENST00000470588 AMER1Q5JTC6 1135 aaPredicted RBP22.81■■□□□ 1.24
SMARCD3-206ENST00000470588 TMEM2Q9UHN6 1383 aa22.8■■□□□ 1.24
SMARCD3-206ENST00000470588 PELP1Q8IZL8 1130 aaKnown RBP22.79■■□□□ 1.24
SMARCD3-206ENST00000470588 INSRP06213 1382 aa22.79■■□□□ 1.24
SMARCD3-206ENST00000470588 ASXL1Q8IXJ9 1541 aa22.79■■□□□ 1.24
SMARCD3-206ENST00000470588 MYOM1P52179 1685 aa22.78■■□□□ 1.24
SMARCD3-206ENST00000470588 PUS7Q96PZ0 661 aaKnown RBP22.78■■□□□ 1.24
SMARCD3-206ENST00000470588 YTHDC2Q9H6S0 1430 aaKnown RBP22.75■■□□□ 1.23
SMARCD3-206ENST00000470588 SETD1AO15047 1707 aaKnown RBP22.75■■□□□ 1.23
SMARCD3-206ENST00000470588 SMG6Q86US8 1419 aaKnown RBP22.75■■□□□ 1.23
SMARCD3-206ENST00000470588 NRXN3Q9Y4C0 1643 aa22.74■■□□□ 1.23
SMARCD3-206ENST00000470588 SENP3Q9H4L4 574 aaPredicted RBP22.73■■□□□ 1.23
SMARCD3-206ENST00000470588 ERICH6BQ5W0A0 696 aa22.73■■□□□ 1.23
SMARCD3-206ENST00000470588 EID1Q9Y6B2 187 aa22.73■■□□□ 1.23
SMARCD3-206ENST00000470588 SLIT1O75093 1534 aa22.73■■□□□ 1.23
SMARCD3-206ENST00000470588 PPP2R1AP30153 589 aa22.72■■□□□ 1.23
SMARCD3-206ENST00000470588 THEMISQ8N1K5 641 aaPredicted RBP22.72■■□□□ 1.23
SMARCD3-206ENST00000470588 BCANQ96GW7 911 aa22.72■■□□□ 1.23
SMARCD3-206ENST00000470588 STK26Q9P289 416 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms