RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	TCP11L2	Q8N4U5	519 aa		13.57	□□□□□ -0.24
CHD3-208	ENST00000470531	CARMIL2	Q6F5E8	1435 aa		13.57	□□□□□ -0.24
CHD3-208	ENST00000470531	DNMBP	Q6XZF7	1577 aa		13.56	□□□□□ -0.24
CHD3-208	ENST00000470531	SEC24B	O95487	1268 aa		13.56	□□□□□ -0.24
CHD3-208	ENST00000470531	EFCAB2	Q5VUJ9	269 aa		13.56	□□□□□ -0.24
CHD3-208	ENST00000470531	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD3-208	ENST00000470531	C14orf37	Q86TY3	774 aa		13.56	□□□□□ -0.24
CHD3-208	ENST00000470531	DISP3	Q9P2K9	1392 aa		13.56	□□□□□ -0.24
CHD3-208	ENST00000470531	CUL7	Q14999	1698 aa		13.55	□□□□□ -0.24
CHD3-208	ENST00000470531	FBLN1	P23142	703 aa		13.55	□□□□□ -0.24
CHD3-208	ENST00000470531	PZP	P20742	1482 aa		13.55	□□□□□ -0.24
CHD3-208	ENST00000470531	C8orf34	Q49A92	452 aa		13.55	□□□□□ -0.24
CHD3-208	ENST00000470531	RWDD1	Q9H446	243 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD3-208	ENST00000470531	CABP2	Q9NPB3	220 aa		13.55	□□□□□ -0.24
CHD3-208	ENST00000470531	MYH16	Q9H6N6	1097 aa		13.54	□□□□□ -0.24
CHD3-208	ENST00000470531	CC2D2A	Q9P2K1	1620 aa		13.54	□□□□□ -0.24
CHD3-208	ENST00000470531	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.54	□□□□□ -0.24
CHD3-208	ENST00000470531	SAMD9	Q5K651	1589 aa		13.54	□□□□□ -0.24
CHD3-208	ENST00000470531		E9PSI1	815 aa		13.54	□□□□□ -0.24
CHD3-208	ENST00000470531	DMRT2	Q9Y5R5	561 aa		13.54	□□□□□ -0.24
CHD3-208	ENST00000470531	HMOX1	P09601	288 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	PDIA4	P13667	645 aa	Known RBP	13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	ANKRD45	Q5TZF3	282 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	PDZRN3	Q9UPQ7	1066 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	ARHGEF11	O15085	1522 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	DUSP27	Q5VZP5	1158 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	ZNF428	Q96B54	188 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	RSPH6A	Q9H0K4	717 aa		13.53	□□□□□ -0.24
CHD3-208	ENST00000470531	GOLGA6L3	A6NEY3	463 aa		13.52	□□□□□ -0.24
CHD3-208	ENST00000470531	PTPRG	P23470	1445 aa		13.52	□□□□□ -0.24
CHD3-208	ENST00000470531	C9orf84	Q5VXU9	1444 aa		13.52	□□□□□ -0.25
CHD3-208	ENST00000470531	PNN	Q9H307	717 aa	Known RBP	13.52	□□□□□ -0.25
CHD3-208	ENST00000470531	ABCA5	Q8WWZ7	1642 aa		13.51	□□□□□ -0.25
CHD3-208	ENST00000470531	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.51	□□□□□ -0.25
CHD3-208	ENST00000470531	URB2	Q14146	1524 aa	Known RBP	13.5	□□□□□ -0.25
CHD3-208	ENST00000470531	MPND	Q8N594	471 aa		13.5	□□□□□ -0.25
CHD3-208	ENST00000470531	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.5	□□□□□ -0.25
CHD3-208	ENST00000470531	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.5	□□□□□ -0.25
CHD3-208	ENST00000470531	ROCK1	Q13464	1354 aa		13.5	□□□□□ -0.25
CHD3-208	ENST00000470531	KDM5C	P41229	1560 aa		13.5	□□□□□ -0.25
CHD3-208	ENST00000470531	THUMPD2	Q9BTF0	503 aa	Known RBP	13.49	□□□□□ -0.25
CHD3-208	ENST00000470531	NECTIN2	Q92692	538 aa		13.49	□□□□□ -0.25
CHD3-208	ENST00000470531	SLC4A10	Q6U841	1118 aa		13.49	□□□□□ -0.25
CHD3-208	ENST00000470531	RBM10	P98175	930 aa	Known RBP	13.48	□□□□□ -0.25
CHD3-208	ENST00000470531	EXOSC9	Q06265	439 aa	Known RBP	13.48	□□□□□ -0.25
CHD3-208	ENST00000470531	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.48	□□□□□ -0.25
CHD3-208	ENST00000470531	PMFBP1	Q8TBY8	1022 aa		13.48	□□□□□ -0.25
CHD3-208	ENST00000470531	PER1	O15534	1290 aa	Predicted RBP	13.48	□□□□□ -0.25
CHD3-208	ENST00000470531	SLFN5	Q08AF3	891 aa		13.48	□□□□□ -0.25
CHD3-208	ENST00000470531	KDM2B	Q8NHM5	1336 aa		13.47	□□□□□ -0.25
CHD3-208	ENST00000470531	POLR1A	O95602	1720 aa	Predicted RBP	13.46	□□□□□ -0.25
CHD3-208	ENST00000470531	RIPK4	P57078	832 aa		13.46	□□□□□ -0.25
CHD3-208	ENST00000470531	CGNL1	Q0VF96	1302 aa		13.46	□□□□□ -0.25
CHD3-208	ENST00000470531	DZIP1L	Q8IYY4	767 aa	Known RBP	13.46	□□□□□ -0.25
CHD3-208	ENST00000470531	ESF1	Q9H501	851 aa	Known RBP	13.46	□□□□□ -0.25
CHD3-208	ENST00000470531	LAMC3	Q9Y6N6	1575 aa		13.46	□□□□□ -0.26
CHD3-208	ENST00000470531	PLEKHH1	Q9ULM0	1364 aa		13.46	□□□□□ -0.26
CHD3-208	ENST00000470531	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.46	□□□□□ -0.26
CHD3-208	ENST00000470531	ZKSCAN2	Q63HK3	967 aa		13.46	□□□□□ -0.26
CHD3-208	ENST00000470531	C22orf23	Q9BZE7	217 aa		13.46	□□□□□ -0.26
CHD3-208	ENST00000470531	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.46	□□□□□ -0.26
CHD3-208	ENST00000470531	PARD3	Q8TEW0	1356 aa		13.45	□□□□□ -0.26
CHD3-208	ENST00000470531	PTMA	P06454	111 aa	Known RBP	13.45	□□□□□ -0.26
CHD3-208	ENST00000470531	WWC1	Q8IX03	1113 aa		13.45	□□□□□ -0.26
CHD3-208	ENST00000470531	TRO	Q12816	1431 aa	Predicted RBP	13.45	□□□□□ -0.26
CHD3-208	ENST00000470531	MBD5	Q9P267	1494 aa		13.45	□□□□□ -0.26
CHD3-208	ENST00000470531	CAMSAP2	Q08AD1	1489 aa		13.44	□□□□□ -0.26
CHD3-208	ENST00000470531	ERBIN	Q96RT1	1412 aa		13.44	□□□□□ -0.26
CHD3-208	ENST00000470531	GOLGA6L22	H0YM25	854 aa		13.44	□□□□□ -0.26
CHD3-208	ENST00000470531	RLBP1	P12271	317 aa		13.43	□□□□□ -0.26
CHD3-208	ENST00000470531	L1TD1	Q5T7N2	865 aa	Known RBP	13.43	□□□□□ -0.26
CHD3-208	ENST00000470531	PCDHB15	Q9Y5E8	787 aa		13.43	□□□□□ -0.26
CHD3-208	ENST00000470531	KIF14	Q15058	1648 aa		13.43	□□□□□ -0.26
CHD3-208	ENST00000470531	RALGAPB	Q86X10	1494 aa		13.43	□□□□□ -0.26
CHD3-208	ENST00000470531	PANK2	Q9BZ23	570 aa		13.43	□□□□□ -0.26
CHD3-208	ENST00000470531	FAM43A	Q8N2R8	423 aa		13.42	□□□□□ -0.26
CHD3-208	ENST00000470531	TESK2	Q96S53	571 aa		13.42	□□□□□ -0.26
CHD3-208	ENST00000470531	KIAA0586	Q9BVV6	1533 aa		13.42	□□□□□ -0.26
CHD3-208	ENST00000470531	DNMT1	P26358	1616 aa	Known RBP	13.42	□□□□□ -0.26
CHD3-208	ENST00000470531	KANK1	Q14678	1352 aa		13.42	□□□□□ -0.26
CHD3-208	ENST00000470531	RUNDC1	Q96C34	613 aa		13.41	□□□□□ -0.26
CHD3-208	ENST00000470531	NOB1	Q9ULX3	412 aa	Known RBP	13.41	□□□□□ -0.26
CHD3-208	ENST00000470531	ADGRF5	Q8IZF2	1346 aa		13.41	□□□□□ -0.26
CHD3-208	ENST00000470531	WDR62	O43379	1518 aa		13.4	□□□□□ -0.26
CHD3-208	ENST00000470531	IQGAP2	Q13576	1575 aa		13.4	□□□□□ -0.26
CHD3-208	ENST00000470531	TRAK2	O60296	914 aa		13.4	□□□□□ -0.26
CHD3-208	ENST00000470531	LMOD2	Q6P5Q4	547 aa		13.4	□□□□□ -0.26
CHD3-208	ENST00000470531	DDX49	Q9Y6V7	483 aa	Known RBP	13.39	□□□□□ -0.27
CHD3-208	ENST00000470531	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.39	□□□□□ -0.27
CHD3-208	ENST00000470531	LTV1	Q96GA3	475 aa	Predicted RBP	13.39	□□□□□ -0.27
CHD3-208	ENST00000470531	TBC1D2	Q9BYX2	928 aa		13.39	□□□□□ -0.27
CHD3-208	ENST00000470531	NUP153	P49790	1475 aa	Known RBP	13.38	□□□□□ -0.27
CHD3-208	ENST00000470531	RARS	P54136	660 aa	Known RBP	13.37	□□□□□ -0.27
CHD3-208	ENST00000470531	DCTN1	Q14203	1278 aa		13.37	□□□□□ -0.27
CHD3-208	ENST00000470531	RSPH4A	Q5TD94	716 aa		13.37	□□□□□ -0.27
CHD3-208	ENST00000470531	IPO8	O15397	1037 aa	Known RBP	13.36	□□□□□ -0.27
CHD3-208	ENST00000470531	RNF214	Q8ND24	703 aa		13.36	□□□□□ -0.27
CHD3-208	ENST00000470531	PLEKHH2	Q8IVE3	1493 aa		13.36	□□□□□ -0.27
CHD3-208	ENST00000470531	TRIM6-TRIM34	B2RNG4	842 aa		13.36	□□□□□ -0.27
CHD3-208	ENST00000470531	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.36	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms