RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RRP1P56182 461 aaKnown RBP25.48■■□□□ 1.67
VIM-203ENST00000469543 NUTM2DQ5VT03 806 aaPredicted RBP25.48■■□□□ 1.67
VIM-203ENST00000469543 CEP152O94986 1710 aa25.48■■□□□ 1.67
VIM-203ENST00000469543 TET3O43151 1660 aa25.48■■□□□ 1.67
VIM-203ENST00000469543 MROH1Q8NDA8 1641 aa25.47■■□□□ 1.67
VIM-203ENST00000469543 VWDEQ8N2E2 1590 aa25.45■■□□□ 1.66
VIM-203ENST00000469543 KIDINS220Q9ULH0 1771 aa25.44■■□□□ 1.66
VIM-203ENST00000469543 IQGAP1P46940 1657 aa25.44■■□□□ 1.66
VIM-203ENST00000469543 TMEM132EQ6IEE7 984 aa25.42■■□□□ 1.66
VIM-203ENST00000469543 CD109Q6YHK3 1445 aa25.42■■□□□ 1.66
VIM-203ENST00000469543 CARD14Q9BXL6 1004 aa25.4■■□□□ 1.66
VIM-203ENST00000469543 TRAK1Q9UPV9 953 aa25.4■■□□□ 1.66
VIM-203ENST00000469543 CCDC146Q8IYE0 955 aa25.39■■□□□ 1.66
VIM-203ENST00000469543 MYT1Q01538 1121 aa25.39■■□□□ 1.65
VIM-203ENST00000469543 CDCA8Q53HL2 280 aa25.39■■□□□ 1.65
VIM-203ENST00000469543 STAC3Q96MF2 364 aa25.38■■□□□ 1.65
VIM-203ENST00000469543 FANCIQ9NVI1 1328 aa25.38■■□□□ 1.65
VIM-203ENST00000469543 ZNF518AQ6AHZ1 1483 aa25.37■■□□□ 1.65
VIM-203ENST00000469543 PDE3BQ13370 1112 aa25.37■■□□□ 1.65
VIM-203ENST00000469543 NOS1P29475 1434 aa25.36■■□□□ 1.65
VIM-203ENST00000469543 BLMP54132 1417 aaPredicted RBP25.36■■□□□ 1.65
VIM-203ENST00000469543 WDR43Q15061 677 aaKnown RBP eCLIP25.36■■□□□ 1.65
VIM-203ENST00000469543 PPRC1Q5VV67 1664 aaKnown RBP25.36■■□□□ 1.65
VIM-203ENST00000469543 PLEKHH1Q9ULM0 1364 aa25.34■■□□□ 1.65
VIM-203ENST00000469543 EFCAB6Q5THR3 1501 aa25.34■■□□□ 1.65
VIM-203ENST00000469543 NPATQ14207 1427 aa25.34■■□□□ 1.65
VIM-203ENST00000469543 SKAP1Q86WV1 359 aa25.33■■□□□ 1.65
VIM-203ENST00000469543 EIF3AQ14152 1382 aaKnown RBP25.33■■□□□ 1.65
VIM-203ENST00000469543 MROH2AA6NES4 1674 aa25.32■■□□□ 1.64
VIM-203ENST00000469543 TNNT2P45379 298 aaPredicted RBP25.32■■□□□ 1.64
VIM-203ENST00000469543 C20orf194Q5TEA3 1177 aa25.32■■□□□ 1.64
VIM-203ENST00000469543 ABCA6Q8N139 1617 aa25.32■■□□□ 1.64
VIM-203ENST00000469543 ERVK-7P63135 1459 aa25.31■■□□□ 1.64
VIM-203ENST00000469543 MAP3K4Q9Y6R4 1608 aa25.31■■□□□ 1.64
VIM-203ENST00000469543 SLC12A5Q9H2X9 1139 aa25.29■■□□□ 1.64
VIM-203ENST00000469543 POGZQ7Z3K3 1410 aa25.29■■□□□ 1.64
VIM-203ENST00000469543 ASXL1Q8IXJ9 1541 aa25.28■■□□□ 1.64
VIM-203ENST00000469543 MYOM1P52179 1685 aa25.28■■□□□ 1.64
VIM-203ENST00000469543 KIF1BO60333 1816 aa25.28■■□□□ 1.64
VIM-203ENST00000469543 FRMPD1Q5SYB0 1578 aa25.27■■□□□ 1.64
VIM-203ENST00000469543 SYNMO15061 1565 aa25.27■■□□□ 1.64
VIM-203ENST00000469543 SPINK5Q9NQ38 1064 aaPredicted RBP25.26■■□□□ 1.63
VIM-203ENST00000469543 CRBNQ96SW2 442 aa25.26■■□□□ 1.63
VIM-203ENST00000469543 APAF1O14727 1248 aa25.25■■□□□ 1.63
VIM-203ENST00000469543 SAFB2Q14151 953 aaKnown RBP eCLIP25.25■■□□□ 1.63
VIM-203ENST00000469543 CENPJQ9HC77 1338 aaPredicted RBP25.24■■□□□ 1.63
VIM-203ENST00000469543 MYOM2P54296 1465 aa25.24■■□□□ 1.63
VIM-203ENST00000469543 DUSP27Q5VZP5 1158 aa25.24■■□□□ 1.63
VIM-203ENST00000469543 C14orf93Q9H972 538 aaKnown RBP25.23■■□□□ 1.63
VIM-203ENST00000469543 ZMYM4Q5VZL5 1548 aa25.22■■□□□ 1.63
VIM-203ENST00000469543 CYB5RLQ6IPT4 315 aa25.21■■□□□ 1.63
VIM-203ENST00000469543 DMRT2Q9Y5R5 561 aa25.21■■□□□ 1.63
VIM-203ENST00000469543 MLH3Q9UHC1 1453 aa25.2■■□□□ 1.62
VIM-203ENST00000469543 KDM5AP29375 1690 aaKnown RBP25.2■■□□□ 1.62
VIM-203ENST00000469543 GOLGA2Q08379 1002 aa25.19■■□□□ 1.62
VIM-203ENST00000469543 ZNF521Q96K83 1311 aa25.18■■□□□ 1.62
VIM-203ENST00000469543 KIAA1210Q9ULL0 1709 aa25.18■■□□□ 1.62
VIM-203ENST00000469543 NRXN1Q9ULB1 1477 aa25.17■■□□□ 1.62
VIM-203ENST00000469543 LMTK2Q8IWU2 1503 aa25.17■■□□□ 1.62
VIM-203ENST00000469543 IDI1Q13907 227 aa25.17■■□□□ 1.62
VIM-203ENST00000469543 ERICH6Q7L0X2 663 aa25.17■■□□□ 1.62
VIM-203ENST00000469543 ADGRB3O60242 1522 aa25.17■■□□□ 1.62
VIM-203ENST00000469543 IFT172Q9UG01 1749 aa25.16■■□□□ 1.62
VIM-203ENST00000469543 PIK3C2GO75747 1445 aa25.16■■□□□ 1.62
VIM-203ENST00000469543 INSRP06213 1382 aa25.16■■□□□ 1.62
VIM-203ENST00000469543 PAK3O75914 559 aaPredicted RBP25.16■■□□□ 1.62
VIM-203ENST00000469543 STK26Q9P289 416 aa25.15■■□□□ 1.62
VIM-203ENST00000469543 NEUROD2Q15784 382 aa25.15■■□□□ 1.62
VIM-203ENST00000469543 HECW2Q9P2P5 1572 aa25.15■■□□□ 1.62
VIM-203ENST00000469543 NPC1L1Q9UHC9 1359 aa25.13■■□□□ 1.61
VIM-203ENST00000469543 NEURL4Q96JN8 1562 aa25.13■■□□□ 1.61
VIM-203ENST00000469543 ABCC3O15438 1527 aa25.13■■□□□ 1.61
VIM-203ENST00000469543 SLFN5Q08AF3 891 aa25.12■■□□□ 1.61
VIM-203ENST00000469543 YEATS2Q9ULM3 1422 aa25.12■■□□□ 1.61
VIM-203ENST00000469543 MORC1Q86VD1 984 aa25.11■■□□□ 1.61
VIM-203ENST00000469543 CABP2Q9NPB3 220 aa25.11■■□□□ 1.61
VIM-203ENST00000469543 NSD3Q9BZ95 1437 aa25.11■■□□□ 1.61
VIM-203ENST00000469543 SIGLEC1Q9BZZ2 1709 aa25.1■■□□□ 1.61
VIM-203ENST00000469543 RRP7AQ9Y3A4 280 aaKnown RBP25.1■■□□□ 1.61
VIM-203ENST00000469543 FBXO31Q5XUX0 539 aaPredicted RBP25.09■■□□□ 1.61
VIM-203ENST00000469543 NPM2Q86SE8 214 aaKnown RBP25.09■■□□□ 1.61
VIM-203ENST00000469543 BCAR3O75815 825 aa25.09■■□□□ 1.61
VIM-203ENST00000469543 ADGRB1O14514 1584 aa25.08■■□□□ 1.61
VIM-203ENST00000469543 SLC24A1O60721 1099 aa25.07■■□□□ 1.6
VIM-203ENST00000469543 PPLO60437 1756 aa25.06■■□□□ 1.6
VIM-203ENST00000469543 VGFO15240 615 aaPredicted RBP25.06■■□□□ 1.6
VIM-203ENST00000469543 SBNO2Q9Y2G9 1366 aa25.05■■□□□ 1.6
VIM-203ENST00000469543 MTHFSP49914 203 aa25.04■■□□□ 1.6
VIM-203ENST00000469543 PDE4AP27815 886 aa25.03■■□□□ 1.6
VIM-203ENST00000469543 TRMT2AQ8IZ69 625 aaKnown RBP25.03■■□□□ 1.6
VIM-203ENST00000469543 RPGRIP1LQ68CZ1 1315 aa25.02■■□□□ 1.6
VIM-203ENST00000469543 CFAP74Q9C0B2 1584 aa25.01■■□□□ 1.59
VIM-203ENST00000469543 CAMSAP1Q5T5Y3 1602 aa25.01■■□□□ 1.59
VIM-203ENST00000469543 DIP2CQ9Y2E4 1556 aa25.01■■□□□ 1.59
VIM-203ENST00000469543 NOP58Q9Y2X3 529 aaKnown RBP25■■□□□ 1.59
VIM-203ENST00000469543 QRICH2Q9H0J4 1663 aa25■■□□□ 1.59
VIM-203ENST00000469543 SETBP1Q9Y6X0 1596 aa25■■□□□ 1.59
VIM-203ENST00000469543 NEO1Q92859 1461 aa25■■□□□ 1.59
VIM-203ENST00000469543 WWC1Q8IX03 1113 aa24.99■■□□□ 1.59
VIM-203ENST00000469543 ANP32AP39687 249 aaKnown RBP24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms