RNA–Protein interactions for RNA: ENST00000469129.1

SMC1A-205, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-205ENST00000469129 ANP32CO43423 234 aa13.02□□□□□ -0.33
SMC1A-205ENST00000469129 SPATA31D1Q6ZQQ2 1576 aa13.01□□□□□ -0.33
SMC1A-205ENST00000469129 ADAMTSL3P82987 1691 aa13□□□□□ -0.33
SMC1A-205ENST00000469129 TMEM131LA2VDJ0 1609 aa13□□□□□ -0.33
SMC1A-205ENST00000469129 ERVK-7P63135 1459 aa13□□□□□ -0.33
SMC1A-205ENST00000469129 KDM5AP29375 1690 aaKnown RBP12.99□□□□□ -0.33
SMC1A-205ENST00000469129 NEXMIFQ5QGS0 1516 aa12.99□□□□□ -0.33
SMC1A-205ENST00000469129 SCAF11Q99590 1463 aaKnown RBP12.99□□□□□ -0.33
SMC1A-205ENST00000469129 EIF3AQ14152 1382 aaKnown RBP12.99□□□□□ -0.33
SMC1A-205ENST00000469129 KIF7Q2M1P5 1343 aa12.99□□□□□ -0.33
SMC1A-205ENST00000469129 RPGRIP1LQ68CZ1 1315 aa12.98□□□□□ -0.33
SMC1A-205ENST00000469129 CCER2I3L3R5 266 aa12.98□□□□□ -0.33
SMC1A-205ENST00000469129 FER1L4A9Z1Z3 1794 aa12.97□□□□□ -0.33
SMC1A-205ENST00000469129 QRICH2Q9H0J4 1663 aa12.95□□□□□ -0.34
SMC1A-205ENST00000469129 PIK3C2GO75747 1445 aa12.95□□□□□ -0.34
SMC1A-205ENST00000469129 SLC52A1Q9NWF4 448 aa12.94□□□□□ -0.34
SMC1A-205ENST00000469129 ARHGEF28Q8N1W1 1705 aaKnown RBP12.93□□□□□ -0.34
SMC1A-205ENST00000469129 RIMS1Q86UR5 1692 aaKnown RBP12.93□□□□□ -0.34
SMC1A-205ENST00000469129 PTPRMP28827 1452 aa12.93□□□□□ -0.34
SMC1A-205ENST00000469129 MLECQ14165 292 aa12.93□□□□□ -0.34
SMC1A-205ENST00000469129 MYOM1P52179 1685 aa12.93□□□□□ -0.34
SMC1A-205ENST00000469129 ST20-MTHFSA0A0A6YYL1 179 aa12.92□□□□□ -0.34
SMC1A-205ENST00000469129 ZFYVE9O95405 1425 aa12.92□□□□□ -0.34
SMC1A-205ENST00000469129 C11orf95C9JLR9 678 aaPredicted RBP12.91□□□□□ -0.34
SMC1A-205ENST00000469129 NBPF1Q3BBV0 1214 aa12.91□□□□□ -0.34
SMC1A-205ENST00000469129 YTHDC1Q96MU7 727 aaKnown RBP12.91□□□□□ -0.34
SMC1A-205ENST00000469129 ADGRB1O14514 1584 aa12.9□□□□□ -0.34
SMC1A-205ENST00000469129 SLC24A1O60721 1099 aa12.9□□□□□ -0.34
SMC1A-205ENST00000469129 CHGAP10645 457 aaKnown RBP12.9□□□□□ -0.34
SMC1A-205ENST00000469129 ESF1Q9H501 851 aaKnown RBP12.89□□□□□ -0.35
SMC1A-205ENST00000469129 C3P01024 1663 aa12.89□□□□□ -0.35
SMC1A-205ENST00000469129 UBR1Q8IWV7 1749 aa12.88□□□□□ -0.35
SMC1A-205ENST00000469129 TMF1P82094 1093 aa12.88□□□□□ -0.35
SMC1A-205ENST00000469129 KTN1Q86UP2 1357 aaKnown RBP12.88□□□□□ -0.35
SMC1A-205ENST00000469129 SBNO2Q9Y2G9 1366 aa12.87□□□□□ -0.35
SMC1A-205ENST00000469129 CDCA8Q53HL2 280 aa12.87□□□□□ -0.35
SMC1A-205ENST00000469129 SETD1AO15047 1707 aaKnown RBP12.87□□□□□ -0.35
SMC1A-205ENST00000469129 ADGRF5Q8IZF2 1346 aa12.87□□□□□ -0.35
SMC1A-205ENST00000469129 DISP3Q9P2K9 1392 aa12.86□□□□□ -0.35
SMC1A-205ENST00000469129 VGFO15240 615 aaPredicted RBP12.86□□□□□ -0.35
SMC1A-205ENST00000469129 POLR3GLQ9BT43 218 aa12.86□□□□□ -0.35
SMC1A-205ENST00000469129 PLPPR3Q6T4P5 718 aa12.85□□□□□ -0.35
SMC1A-205ENST00000469129 TESK2Q96S53 571 aa12.85□□□□□ -0.35
SMC1A-205ENST00000469129 A2ML1A8K2U0 1454 aa12.85□□□□□ -0.35
SMC1A-205ENST00000469129 PRKRIP1Q9H875 184 aaPredicted RBP12.84□□□□□ -0.35
SMC1A-205ENST00000469129 KNDC1Q76NI1 1749 aa12.84□□□□□ -0.35
SMC1A-205ENST00000469129 IDI1Q13907 227 aa12.83□□□□□ -0.36
SMC1A-205ENST00000469129 NLRP1Q9C000 1473 aa12.83□□□□□ -0.36
SMC1A-205ENST00000469129 ASXL1Q8IXJ9 1541 aa12.83□□□□□ -0.36
SMC1A-205ENST00000469129 ALKQ9UM73 1620 aa12.82□□□□□ -0.36
SMC1A-205ENST00000469129 CFAP70Q5T0N1 1121 aa12.82□□□□□ -0.36
SMC1A-205ENST00000469129 C14orf93Q9H972 538 aaKnown RBP12.82□□□□□ -0.36
SMC1A-205ENST00000469129 ZMYM3Q14202 1370 aa12.81□□□□□ -0.36
SMC1A-205ENST00000469129 TNRQ92752 1358 aa12.81□□□□□ -0.36
SMC1A-205ENST00000469129 NRXN3Q9Y4C0 1643 aa12.8□□□□□ -0.36
SMC1A-205ENST00000469129 STAG3Q9UJ98 1225 aa12.8□□□□□ -0.36
SMC1A-205ENST00000469129 RIMS2Q9UQ26 1411 aa12.79□□□□□ -0.36
SMC1A-205ENST00000469129 DLC1Q96QB1 1528 aa12.79□□□□□ -0.36
SMC1A-205ENST00000469129 FBXO31Q5XUX0 539 aaPredicted RBP12.79□□□□□ -0.36
SMC1A-205ENST00000469129 USP32Q8NFA0 1604 aa12.79□□□□□ -0.36
SMC1A-205ENST00000469129 CENPJQ9HC77 1338 aaPredicted RBP12.79□□□□□ -0.36
SMC1A-205ENST00000469129 CEBPAP49715 358 aaPredicted RBP12.78□□□□□ -0.36
SMC1A-205ENST00000469129 LMTK3Q96Q04 1460 aa12.78□□□□□ -0.36
SMC1A-205ENST00000469129 ZNF142P52746 1687 aaPredicted RBP12.77□□□□□ -0.36
SMC1A-205ENST00000469129 RALBP1Q15311 655 aa12.76□□□□□ -0.37
SMC1A-205ENST00000469129 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.76□□□□□ -0.37
SMC1A-205ENST00000469129 PARD3Q8TEW0 1356 aa12.75□□□□□ -0.37
SMC1A-205ENST00000469129 TULP4Q9NRJ4 1543 aa12.74□□□□□ -0.37
SMC1A-205ENST00000469129 YTHDC2Q9H6S0 1430 aaKnown RBP12.74□□□□□ -0.37
SMC1A-205ENST00000469129 BRD4O60885 1362 aaPredicted RBP12.74□□□□□ -0.37
SMC1A-205ENST00000469129 MYBBP1AQ9BQG0 1328 aaKnown RBP12.74□□□□□ -0.37
SMC1A-205ENST00000469129 HDGFP51858 240 aaKnown RBP12.74□□□□□ -0.37
SMC1A-205ENST00000469129 MRS2Q9HD23 443 aa12.74□□□□□ -0.37
SMC1A-205ENST00000469129 DIP2AQ14689 1571 aa12.73□□□□□ -0.37
SMC1A-205ENST00000469129 CPS1P31327 1500 aa12.73□□□□□ -0.37
SMC1A-205ENST00000469129 ANKRD26Q9UPS8 1709 aa12.73□□□□□ -0.37
SMC1A-205ENST00000469129 SLIT1O75093 1534 aa12.72□□□□□ -0.37
SMC1A-205ENST00000469129 NPC1L1Q9UHC9 1359 aa12.71□□□□□ -0.37
SMC1A-205ENST00000469129 TRAK1Q9UPV9 953 aa12.71□□□□□ -0.37
SMC1A-205ENST00000469129 CEP170BQ9Y4F5 1589 aaPredicted RBP12.71□□□□□ -0.37
SMC1A-205ENST00000469129 SETD1BQ9UPS6 1966 aaKnown RBP12.7□□□□□ -0.38
SMC1A-205ENST00000469129 NINLQ9Y2I6 1382 aa12.7□□□□□ -0.38
SMC1A-205ENST00000469129 HSPA2P54652 639 aa12.7□□□□□ -0.38
SMC1A-205ENST00000469129 PUS7Q96PZ0 661 aaKnown RBP12.7□□□□□ -0.38
SMC1A-205ENST00000469129 TMEM2Q9UHN6 1383 aa12.69□□□□□ -0.38
SMC1A-205ENST00000469129 KIF20BQ96Q89 1820 aa12.69□□□□□ -0.38
SMC1A-205ENST00000469129 EVC2Q86UK5 1308 aa12.69□□□□□ -0.38
SMC1A-205ENST00000469129 NUTM2DQ5VT03 806 aaPredicted RBP12.69□□□□□ -0.38
SMC1A-205ENST00000469129 PANK3Q9H999 370 aa12.69□□□□□ -0.38
SMC1A-205ENST00000469129 ARHGAP23Q9P227 1491 aa12.69□□□□□ -0.38
SMC1A-205ENST00000469129 LRPPRCP42704 1394 aaKnown RBP12.69□□□□□ -0.38
SMC1A-205ENST00000469129 PER1O15534 1290 aaPredicted RBP12.68□□□□□ -0.38
SMC1A-205ENST00000469129 TMEM132EQ6IEE7 984 aa12.68□□□□□ -0.38
SMC1A-205ENST00000469129 KNSTRNQ9Y448 316 aa12.68□□□□□ -0.38
SMC1A-205ENST00000469129 ITSN1Q15811 1721 aa12.68□□□□□ -0.38
SMC1A-205ENST00000469129 NLRP13Q86W25 1043 aa12.67□□□□□ -0.38
SMC1A-205ENST00000469129 TECPR2O15040 1411 aa12.67□□□□□ -0.38
SMC1A-205ENST00000469129 ADGRB2O60241 1585 aa12.67□□□□□ -0.38
SMC1A-205ENST00000469129 PLEKHG1Q9ULL1 1385 aa12.67□□□□□ -0.38
SMC1A-205ENST00000469129 ATAD2Q6PL18 1390 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms