RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 PPP4CP60510 307 aa12.76□□□□□ -0.37
SYNE1-218ENST00000468937 TMEM134Q9H6X4 195 aa12.76□□□□□ -0.37
SYNE1-218ENST00000468937 IRF6O14896 467 aa12.75□□□□□ -0.37
SYNE1-218ENST00000468937 KRI1Q8N9T8 703 aaKnown RBP12.75□□□□□ -0.37
SYNE1-218ENST00000468937 RNF40O75150 1001 aa12.74□□□□□ -0.37
SYNE1-218ENST00000468937 ZMYND10O75800 440 aa12.74□□□□□ -0.37
SYNE1-218ENST00000468937 BARGINQ6ZT62 677 aa12.73□□□□□ -0.37
SYNE1-218ENST00000468937 WBP1LQ9NX94 342 aa12.72□□□□□ -0.37
SYNE1-218ENST00000468937 RSPH4AQ5TD94 716 aa12.68□□□□□ -0.38
SYNE1-218ENST00000468937 CCDC102AQ96A19 550 aa12.68□□□□□ -0.38
SYNE1-218ENST00000468937 DAXXQ9UER7 740 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-218ENST00000468937 PRR14Q9BWN1 585 aa12.66□□□□□ -0.38
SYNE1-218ENST00000468937 PHOX2BQ99453 314 aa12.64□□□□□ -0.39
SYNE1-218ENST00000468937 SULF1Q8IWU6 871 aa12.63□□□□□ -0.39
SYNE1-218ENST00000468937 PLA2G2EQ9NZK7 142 aa12.61□□□□□ -0.39
SYNE1-218ENST00000468937 KMT5BQ4FZB7 885 aa12.6□□□□□ -0.39
SYNE1-218ENST00000468937 NLRP7Q8WX94 980 aa12.59□□□□□ -0.39
SYNE1-218ENST00000468937 CLCN1P35523 988 aa12.58□□□□□ -0.4
SYNE1-218ENST00000468937 APLP1P51693 650 aa12.58□□□□□ -0.4
SYNE1-218ENST00000468937 AK7Q96M32 723 aa12.58□□□□□ -0.4
SYNE1-218ENST00000468937 DDX11L8A8MPP1 907 aa12.57□□□□□ -0.4
SYNE1-218ENST00000468937 MDM2Q00987 491 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-218ENST00000468937 RDH13Q8NBN7 331 aa12.57□□□□□ -0.4
SYNE1-218ENST00000468937 SLC10A3P09131 477 aa12.56□□□□□ -0.4
SYNE1-218ENST00000468937 GPCPD1Q9NPB8 672 aa12.56□□□□□ -0.4
SYNE1-218ENST00000468937 ITGBL1O95965 494 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-218ENST00000468937 CFHP08603 1231 aa12.55□□□□□ -0.4
SYNE1-218ENST00000468937 KCNC4Q03721 635 aa12.53□□□□□ -0.4
SYNE1-218ENST00000468937 AMHR2Q16671 573 aa12.53□□□□□ -0.4
SYNE1-218ENST00000468937 IFFO2Q5TF58 517 aa12.53□□□□□ -0.4
SYNE1-218ENST00000468937 ACTN4O43707 911 aaKnown RBP12.52□□□□□ -0.41
SYNE1-218ENST00000468937 IL21Q9HBE4 155 aa12.51□□□□□ -0.41
SYNE1-218ENST00000468937 SLC24A3Q9HC58 644 aa12.51□□□□□ -0.41
SYNE1-218ENST00000468937 PCDHB3Q9Y5E6 796 aa12.51□□□□□ -0.41
SYNE1-218ENST00000468937 TRIM66O15016 1216 aa12.5□□□□□ -0.41
SYNE1-218ENST00000468937 TTLL12Q14166 644 aaPredicted RBP12.5□□□□□ -0.41
SYNE1-218ENST00000468937 MTRQ99707 1265 aa12.5□□□□□ -0.41
SYNE1-218ENST00000468937 GCGRP47871 477 aa12.48□□□□□ -0.41
SYNE1-218ENST00000468937 TJAP1Q5JTD0 557 aa12.48□□□□□ -0.41
SYNE1-218ENST00000468937 TMUB1Q9BVT8 246 aa12.48□□□□□ -0.41
SYNE1-218ENST00000468937 CD46P15529 392 aa12.47□□□□□ -0.41
SYNE1-218ENST00000468937 FAM217BQ9NTX9 383 aaPredicted RBP12.47□□□□□ -0.41
SYNE1-218ENST00000468937 COPS2P61201 443 aa12.45□□□□□ -0.42
SYNE1-218ENST00000468937 GRIPAP1Q4V328 841 aa12.44□□□□□ -0.42
SYNE1-218ENST00000468937 NR1I2O75469 434 aa12.43□□□□□ -0.42
SYNE1-218ENST00000468937 SSTR3P32745 418 aaPredicted RBP12.43□□□□□ -0.42
SYNE1-218ENST00000468937 BLOC1S3Q6QNY0 202 aa12.42□□□□□ -0.42
SYNE1-218ENST00000468937 GIGYF2Q6Y7W6 1299 aaKnown RBP12.42□□□□□ -0.42
SYNE1-218ENST00000468937 REPIN1Q9BWE0 567 aaKnown RBP12.42□□□□□ -0.42
SYNE1-218ENST00000468937 ZPR1O75312 459 aa12.41□□□□□ -0.42
SYNE1-218ENST00000468937 ATP6V1AP38606 617 aa12.41□□□□□ -0.42
SYNE1-218ENST00000468937 PDE4DQ08499 809 aa12.41□□□□□ -0.42
SYNE1-218ENST00000468937 FUT2Q10981 343 aa12.4□□□□□ -0.42
SYNE1-218ENST00000468937 PARP9Q8IXQ6 854 aa12.4□□□□□ -0.42
SYNE1-218ENST00000468937 KDM4AO75164 1064 aa12.39□□□□□ -0.43
SYNE1-218ENST00000468937 USP46P62068 366 aa12.39□□□□□ -0.43
SYNE1-218ENST00000468937 ZNF516Q92618 1163 aa12.39□□□□□ -0.43
SYNE1-218ENST00000468937 A0A0G2JS52 829 aa12.37□□□□□ -0.43
SYNE1-218ENST00000468937 PUS10Q3MIT2 529 aaKnown RBP12.37□□□□□ -0.43
SYNE1-218ENST00000468937 NUTM1Q86Y26 1132 aa12.37□□□□□ -0.43
SYNE1-218ENST00000468937 MORN1Q5T089 497 aa12.36□□□□□ -0.43
SYNE1-218ENST00000468937 TPRNQ4KMQ1 711 aa12.35□□□□□ -0.43
SYNE1-218ENST00000468937 SCUBE3Q8IX30 993 aa12.35□□□□□ -0.43
SYNE1-218ENST00000468937 GGCXP38435 758 aa12.32□□□□□ -0.44
SYNE1-218ENST00000468937 DIXDC1Q155Q3 683 aa12.32□□□□□ -0.44
SYNE1-218ENST00000468937 BEGAINQ9BUH8 593 aa12.32□□□□□ -0.44
SYNE1-218ENST00000468937 NKX2-3Q8TAU0 364 aa12.31□□□□□ -0.44
SYNE1-218ENST00000468937 Q3C1V9 767 aa12.3□□□□□ -0.44
SYNE1-218ENST00000468937 SLC27A5Q9Y2P5 690 aa12.3□□□□□ -0.44
SYNE1-218ENST00000468937 SALL2Q9Y467 1007 aaPredicted RBP12.3□□□□□ -0.44
SYNE1-218ENST00000468937 HOXA2O43364 376 aa12.29□□□□□ -0.44
SYNE1-218ENST00000468937 RGS20O76081 388 aa12.29□□□□□ -0.44
SYNE1-218ENST00000468937 FMNL1O95466 1100 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-218ENST00000468937 ADH1BP00325 375 aa12.29□□□□□ -0.44
SYNE1-218ENST00000468937 MS4A1P11836 297 aa12.29□□□□□ -0.44
SYNE1-218ENST00000468937 SPSB2Q99619 263 aa12.28□□□□□ -0.44
SYNE1-218ENST00000468937 TLL1O43897 1013 aa12.27□□□□□ -0.45
SYNE1-218ENST00000468937 PPP1R18Q6NYC8 613 aa12.27□□□□□ -0.45
SYNE1-218ENST00000468937 SPIRE2Q8WWL2 714 aa12.27□□□□□ -0.45
SYNE1-218ENST00000468937 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.27□□□□□ -0.45
SYNE1-218ENST00000468937 BRICD5Q6PL45 260 aa12.24□□□□□ -0.45
SYNE1-218ENST00000468937 THAP11Q96EK4 314 aa12.24□□□□□ -0.45
SYNE1-218ENST00000468937 SLC6A16Q9GZN6 736 aa12.23□□□□□ -0.45
SYNE1-218ENST00000468937 TBC1D2Q9BYX2 928 aa12.22□□□□□ -0.45
SYNE1-218ENST00000468937 KDM4CQ9H3R0 1056 aa12.22□□□□□ -0.45
SYNE1-218ENST00000468937 FDX1P10109 184 aa12.21□□□□□ -0.45
SYNE1-218ENST00000468937 GJA5P36382 358 aa12.2□□□□□ -0.46
SYNE1-218ENST00000468937 HLA-CQ95604 372 aa12.2□□□□□ -0.46
SYNE1-218ENST00000468937 GPBP1L1Q9HC44 474 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-218ENST00000468937 MOXD2PA6NHM9 499 aa12.19□□□□□ -0.46
SYNE1-218ENST00000468937 S1PR4O95977 384 aa12.19□□□□□ -0.46
SYNE1-218ENST00000468937 RNF19BQ6ZMZ0 732 aa12.19□□□□□ -0.46
SYNE1-218ENST00000468937 RSPH6AQ9H0K4 717 aa12.19□□□□□ -0.46
SYNE1-218ENST00000468937 MSS51Q4VC12 460 aa12.18□□□□□ -0.46
SYNE1-218ENST00000468937 DDRGK1Q96HY6 314 aa12.18□□□□□ -0.46
SYNE1-218ENST00000468937 USB1Q9BQ65 265 aaKnown RBP12.18□□□□□ -0.46
SYNE1-218ENST00000468937 NDUFV2P19404 249 aa12.17□□□□□ -0.46
SYNE1-218ENST00000468937 GUCA2AQ02747 115 aa12.17□□□□□ -0.46
SYNE1-218ENST00000468937 RNF223E7ERA6 249 aa12.16□□□□□ -0.46
SYNE1-218ENST00000468937 NEUROD2Q15784 382 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms