RNA–Protein interactions for RNA: ENST00000466862.1

GTF3C3-209, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 2

Gene GTF3C3, Length 447 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-209ENST00000466862 GNPATO15228 680 aa8.48□□□□□ -1.05
GTF3C3-209ENST00000466862 NECTIN2Q92692 538 aa8.48□□□□□ -1.05
GTF3C3-209ENST00000466862 IL21Q9HBE4 155 aa8.48□□□□□ -1.05
GTF3C3-209ENST00000466862 HDGFP51858 240 aaKnown RBP8.47□□□□□ -1.05
GTF3C3-209ENST00000466862 ZNF516Q92618 1163 aa8.47□□□□□ -1.05
GTF3C3-209ENST00000466862 SLC10A3P09131 477 aa8.45□□□□□ -1.06
GTF3C3-209ENST00000466862 Q6ZNB5 142 aa8.45□□□□□ -1.06
GTF3C3-209ENST00000466862 GPIHBP1Q8IV16 184 aa8.45□□□□□ -1.06
GTF3C3-209ENST00000466862 LCE2BO14633 110 aa8.43□□□□□ -1.06
GTF3C3-209ENST00000466862 OATP04181 439 aa8.43□□□□□ -1.06
GTF3C3-209ENST00000466862 PHOX2BQ99453 314 aa8.43□□□□□ -1.06
GTF3C3-209ENST00000466862 CFHP08603 1231 aa8.42□□□□□ -1.06
GTF3C3-209ENST00000466862 PRR14Q9BWN1 585 aa8.42□□□□□ -1.06
GTF3C3-209ENST00000466862 ACTN4O43707 911 aaKnown RBP8.41□□□□□ -1.06
GTF3C3-209ENST00000466862 SLC4A3P48751 1232 aa8.41□□□□□ -1.06
GTF3C3-209ENST00000466862 COPS2P61201 443 aa8.41□□□□□ -1.06
GTF3C3-209ENST00000466862 BLOC1S3Q6QNY0 202 aa8.41□□□□□ -1.06
GTF3C3-209ENST00000466862 NKX2-3Q8TAU0 364 aa8.41□□□□□ -1.06
GTF3C3-209ENST00000466862 ZPR1O75312 459 aa8.4□□□□□ -1.06
GTF3C3-209ENST00000466862 PCDHB3Q9Y5E6 796 aa8.4□□□□□ -1.06
GTF3C3-209ENST00000466862 TLL1O43897 1013 aa8.39□□□□□ -1.07
GTF3C3-209ENST00000466862 PPP1R18Q6NYC8 613 aa8.39□□□□□ -1.07
GTF3C3-209ENST00000466862 NLRP7Q8WX94 980 aa8.39□□□□□ -1.07
GTF3C3-209ENST00000466862 KMT5BQ4FZB7 885 aa8.37□□□□□ -1.07
GTF3C3-209ENST00000466862 MAP2K5Q13163 448 aa8.36□□□□□ -1.07
GTF3C3-209ENST00000466862 DAXXQ9UER7 740 aaPredicted RBP8.36□□□□□ -1.07
GTF3C3-209ENST00000466862 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.35□□□□□ -1.07
GTF3C3-209ENST00000466862 GFRA3O60609 400 aa8.33□□□□□ -1.08
GTF3C3-209ENST00000466862 EMID1Q96A84 441 aaPredicted RBP8.33□□□□□ -1.08
GTF3C3-209ENST00000466862 PRKD2Q9BZL6 878 aa8.32□□□□□ -1.08
GTF3C3-209ENST00000466862 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.31□□□□□ -1.08
GTF3C3-209ENST00000466862 V9GY48 417 aaPredicted RBP8.31□□□□□ -1.08
GTF3C3-209ENST00000466862 RNF223E7ERA6 249 aa8.3□□□□□ -1.08
GTF3C3-209ENST00000466862 IRF6O14896 467 aa8.3□□□□□ -1.08
GTF3C3-209ENST00000466862 ADH1BP00325 375 aa8.3□□□□□ -1.08
GTF3C3-209ENST00000466862 CCDC102AQ96A19 550 aa8.3□□□□□ -1.08
GTF3C3-209ENST00000466862 TMUB1Q9BVT8 246 aa8.3□□□□□ -1.08
GTF3C3-209ENST00000466862 DDX11L8A8MPP1 907 aa8.29□□□□□ -1.08
GTF3C3-209ENST00000466862 TULP1O00294 542 aaPredicted RBP8.29□□□□□ -1.08
GTF3C3-209ENST00000466862 PUS10Q3MIT2 529 aaKnown RBP8.29□□□□□ -1.08
GTF3C3-209ENST00000466862 MORN1Q5T089 497 aa8.29□□□□□ -1.08
GTF3C3-209ENST00000466862 RDH13Q8NBN7 331 aa8.29□□□□□ -1.08
GTF3C3-209ENST00000466862 NR1I2O75469 434 aa8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 S1PR4O95977 384 aa8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 GCGRP47871 477 aa8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 FUT2Q10981 343 aa8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 TRAF7Q6Q0C0 670 aa8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 SULF1Q8IWU6 871 aa8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 MINK1Q8N4C8 1332 aaPredicted RBP8.28□□□□□ -1.08
GTF3C3-209ENST00000466862 CD46P15529 392 aa8.27□□□□□ -1.09
GTF3C3-209ENST00000466862 GGCXP38435 758 aa8.27□□□□□ -1.09
GTF3C3-209ENST00000466862 LMOD2Q6P5Q4 547 aa8.27□□□□□ -1.09
GTF3C3-209ENST00000466862 THAP11Q96EK4 314 aa8.27□□□□□ -1.09
GTF3C3-209ENST00000466862 SCUBE3Q8IX30 993 aa8.26□□□□□ -1.09
GTF3C3-209ENST00000466862 ANKLE1Q8NAG6 615 aa8.26□□□□□ -1.09
GTF3C3-209ENST00000466862 LAPTM4AQ15012 233 aa8.25□□□□□ -1.09
GTF3C3-209ENST00000466862 RSPH4AQ5TD94 716 aa8.25□□□□□ -1.09
GTF3C3-209ENST00000466862 PLA2G2CQ5R387 149 aa8.24□□□□□ -1.09
GTF3C3-209ENST00000466862 PPEF1O14829 653 aaPredicted RBP8.23□□□□□ -1.09
GTF3C3-209ENST00000466862 ATP6V1AP38606 617 aa8.23□□□□□ -1.09
GTF3C3-209ENST00000466862 MDM2Q00987 491 aaPredicted RBP8.23□□□□□ -1.09
GTF3C3-209ENST00000466862 NRG2O14511 850 aaPredicted RBP8.22□□□□□ -1.09
GTF3C3-209ENST00000466862 TRIM67Q6ZTA4 783 aa8.22□□□□□ -1.09
GTF3C3-209ENST00000466862 SLC6A16Q9GZN6 736 aa8.22□□□□□ -1.09
GTF3C3-209ENST00000466862 SLC27A5Q9Y2P5 690 aa8.22□□□□□ -1.09
GTF3C3-209ENST00000466862 ZMYND10O75800 440 aa8.21□□□□□ -1.1
GTF3C3-209ENST00000466862 SPSB2Q99619 263 aa8.21□□□□□ -1.1
GTF3C3-209ENST00000466862 SALL2Q9Y467 1007 aaPredicted RBP8.21□□□□□ -1.1
GTF3C3-209ENST00000466862 RNF19BQ6ZMZ0 732 aa8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 LIAT1Q6ZQX7 453 aa8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 BARGINQ6ZT62 677 aa8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 FAM160A2Q8N612 972 aaPredicted RBP8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 REPIN1Q9BWE0 567 aaKnown RBP8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 PRDM9Q9NQV7 894 aa8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 FAM217BQ9NTX9 383 aaPredicted RBP8.2□□□□□ -1.1
GTF3C3-209ENST00000466862 BRICD5Q6PL45 260 aa8.19□□□□□ -1.1
GTF3C3-209ENST00000466862 ZC3H15Q8WU90 426 aaKnown RBP8.19□□□□□ -1.1
GTF3C3-209ENST00000466862 GPCPD1Q9NPB8 672 aa8.19□□□□□ -1.1
GTF3C3-209ENST00000466862 SLC19A1P41440 591 aa8.18□□□□□ -1.1
GTF3C3-209ENST00000466862 MSS51Q4VC12 460 aa8.18□□□□□ -1.1
GTF3C3-209ENST00000466862 SPRYD7Q5W111 196 aa8.18□□□□□ -1.1
GTF3C3-209ENST00000466862 HLA-CQ95604 372 aa8.18□□□□□ -1.1
GTF3C3-209ENST00000466862 PDZRN3Q9UPQ7 1066 aa8.18□□□□□ -1.1
GTF3C3-209ENST00000466862 CLCN1P35523 988 aa8.17□□□□□ -1.1
GTF3C3-209ENST00000466862 HOXA2O43364 376 aa8.16□□□□□ -1.1
GTF3C3-209ENST00000466862 FMNL1O95466 1100 aaPredicted RBP8.16□□□□□ -1.1
GTF3C3-209ENST00000466862 AMHR2Q16671 573 aa8.16□□□□□ -1.1
GTF3C3-209ENST00000466862 KDM4AO75164 1064 aa8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 PRR20EP86478 221 aa8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 PRR20CP86479 221 aa8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 PRR20DP86480 221 aa8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 PRR20BP86481 221 aa8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 PRR20AP86496 221 aa8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 ZNF598Q86UK7 904 aaKnown RBP8.15□□□□□ -1.1
GTF3C3-209ENST00000466862 USP46P62068 366 aa8.14□□□□□ -1.11
GTF3C3-209ENST00000466862 FCF1Q9Y324 198 aaKnown RBP8.14□□□□□ -1.11
GTF3C3-209ENST00000466862 GDF9O60383 454 aa8.13□□□□□ -1.11
GTF3C3-209ENST00000466862 ZNF787Q6DD87 383 aa8.13□□□□□ -1.11
GTF3C3-209ENST00000466862 MMP16P51512 607 aa8.12□□□□□ -1.11
GTF3C3-209ENST00000466862 GUCA2AQ02747 115 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms