RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PPRC1Q5VV67 1664 aaKnown RBP11.95□□□□□ -0.5
SYNE1-217ENST00000466159 KIF1BO60333 1816 aa11.95□□□□□ -0.5
SYNE1-217ENST00000466159 AMER1Q5JTC6 1135 aaPredicted RBP11.95□□□□□ -0.5
SYNE1-217ENST00000466159 CD109Q6YHK3 1445 aa11.95□□□□□ -0.5
SYNE1-217ENST00000466159 KIAA1210Q9ULL0 1709 aa11.94□□□□□ -0.5
SYNE1-217ENST00000466159 MAP3K4Q9Y6R4 1608 aa11.94□□□□□ -0.5
SYNE1-217ENST00000466159 CFAP65Q6ZU64 1925 aaKnown RBP11.94□□□□□ -0.5
SYNE1-217ENST00000466159 NEURL4Q96JN8 1562 aa11.94□□□□□ -0.5
SYNE1-217ENST00000466159 PDE3BQ13370 1112 aa11.94□□□□□ -0.5
SYNE1-217ENST00000466159 RCAN3Q9UKA8 241 aa11.94□□□□□ -0.5
SYNE1-217ENST00000466159 BLMP54132 1417 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-217ENST00000466159 EIF3AQ14152 1382 aaKnown RBP11.94□□□□□ -0.5
SYNE1-217ENST00000466159 PPP2R1AP30153 589 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 RRP1P56182 461 aaKnown RBP11.93□□□□□ -0.5
SYNE1-217ENST00000466159 SYNMO15061 1565 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 ABCA6Q8N139 1617 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 MROH2AA6NES4 1674 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 MSH5O43196 834 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 GGT6Q6P531 493 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 ADAMTS8Q9UP79 889 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 MYOM2P54296 1465 aa11.93□□□□□ -0.5
SYNE1-217ENST00000466159 CHGAP10645 457 aaKnown RBP11.92□□□□□ -0.5
SYNE1-217ENST00000466159 MYOM1P52179 1685 aa11.92□□□□□ -0.5
SYNE1-217ENST00000466159 POGZQ7Z3K3 1410 aa11.92□□□□□ -0.5
SYNE1-217ENST00000466159 LMTK2Q8IWU2 1503 aa11.91□□□□□ -0.5
SYNE1-217ENST00000466159 FANCIQ9NVI1 1328 aa11.91□□□□□ -0.5
SYNE1-217ENST00000466159 INSRP06213 1382 aa11.91□□□□□ -0.5
SYNE1-217ENST00000466159 IFT172Q9UG01 1749 aa11.91□□□□□ -0.5
SYNE1-217ENST00000466159 FRMPD1Q5SYB0 1578 aa11.91□□□□□ -0.5
SYNE1-217ENST00000466159 ZMYM4Q5VZL5 1548 aa11.9□□□□□ -0.5
SYNE1-217ENST00000466159 ASXL1Q8IXJ9 1541 aa11.9□□□□□ -0.5
SYNE1-217ENST00000466159 EXOC6Q8TAG9 804 aa11.9□□□□□ -0.5
SYNE1-217ENST00000466159 NPATQ14207 1427 aa11.9□□□□□ -0.5
SYNE1-217ENST00000466159 KDM5AP29375 1690 aaKnown RBP11.9□□□□□ -0.5
SYNE1-217ENST00000466159 NOS1P29475 1434 aa11.89□□□□□ -0.51
SYNE1-217ENST00000466159 ERVK-7P63135 1459 aa11.89□□□□□ -0.51
SYNE1-217ENST00000466159 MLH3Q9UHC1 1453 aa11.89□□□□□ -0.51
SYNE1-217ENST00000466159 CFAP74Q9C0B2 1584 aa11.89□□□□□ -0.51
SYNE1-217ENST00000466159 RAPGEF3O95398 923 aa11.89□□□□□ -0.51
SYNE1-217ENST00000466159 HECW2Q9P2P5 1572 aa11.88□□□□□ -0.51
SYNE1-217ENST00000466159 NRXN1Q9ULB1 1477 aa11.88□□□□□ -0.51
SYNE1-217ENST00000466159 WDR43Q15061 677 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE1-217ENST00000466159 ADGRB3O60242 1522 aa11.88□□□□□ -0.51
SYNE1-217ENST00000466159 CARD14Q9BXL6 1004 aa11.87□□□□□ -0.51
SYNE1-217ENST00000466159 NPC1L1Q9UHC9 1359 aa11.86□□□□□ -0.51
SYNE1-217ENST00000466159 PLIN1O60240 522 aa11.86□□□□□ -0.51
SYNE1-217ENST00000466159 SLC24A1O60721 1099 aa11.86□□□□□ -0.51
SYNE1-217ENST00000466159 TRAK1Q9UPV9 953 aa11.86□□□□□ -0.51
SYNE1-217ENST00000466159 PIK3C2GO75747 1445 aa11.85□□□□□ -0.51
SYNE1-217ENST00000466159 PLEKHH1Q9ULM0 1364 aa11.85□□□□□ -0.51
SYNE1-217ENST00000466159 TMEM132EQ6IEE7 984 aa11.85□□□□□ -0.51
SYNE1-217ENST00000466159 PPLO60437 1756 aa11.84□□□□□ -0.51
SYNE1-217ENST00000466159 CENPJQ9HC77 1338 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-217ENST00000466159 C14orf93Q9H972 538 aaKnown RBP11.84□□□□□ -0.51
SYNE1-217ENST00000466159 ABCC3O15438 1527 aa11.84□□□□□ -0.51
SYNE1-217ENST00000466159 MYO3AQ8NEV4 1616 aa11.83□□□□□ -0.52
SYNE1-217ENST00000466159 NUTM2DQ5VT03 806 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-217ENST00000466159 SETBP1Q9Y6X0 1596 aa11.83□□□□□ -0.52
SYNE1-217ENST00000466159 CCDC146Q8IYE0 955 aa11.83□□□□□ -0.52
SYNE1-217ENST00000466159 SBNO2Q9Y2G9 1366 aa11.82□□□□□ -0.52
SYNE1-217ENST00000466159 SIGLEC1Q9BZZ2 1709 aa11.82□□□□□ -0.52
SYNE1-217ENST00000466159 NEO1Q92859 1461 aa11.82□□□□□ -0.52
SYNE1-217ENST00000466159 ZNF521Q96K83 1311 aa11.82□□□□□ -0.52
SYNE1-217ENST00000466159 CAMSAP1Q5T5Y3 1602 aa11.81□□□□□ -0.52
SYNE1-217ENST00000466159 DUSP27Q5VZP5 1158 aa11.81□□□□□ -0.52
SYNE1-217ENST00000466159 RIMBP3CA6NJZ7 1639 aa11.81□□□□□ -0.52
SYNE1-217ENST00000466159 RIMBP3BA6NNM3 1639 aa11.81□□□□□ -0.52
SYNE1-217ENST00000466159 RIMBP3Q9UFD9 1639 aa11.81□□□□□ -0.52
SYNE1-217ENST00000466159 ADGRB1O14514 1584 aa11.81□□□□□ -0.52
SYNE1-217ENST00000466159 SLC12A5Q9H2X9 1139 aa11.8□□□□□ -0.52
SYNE1-217ENST00000466159 RPGRIP1LQ68CZ1 1315 aa11.8□□□□□ -0.52
SYNE1-217ENST00000466159 DIP2CQ9Y2E4 1556 aa11.8□□□□□ -0.52
SYNE1-217ENST00000466159 GOLGA2Q08379 1002 aa11.8□□□□□ -0.52
SYNE1-217ENST00000466159 CRBNQ96SW2 442 aa11.8□□□□□ -0.52
SYNE1-217ENST00000466159 QRICH2Q9H0J4 1663 aa11.79□□□□□ -0.52
SYNE1-217ENST00000466159 APAF1O14727 1248 aa11.79□□□□□ -0.52
SYNE1-217ENST00000466159 C20orf194Q5TEA3 1177 aa11.79□□□□□ -0.52
SYNE1-217ENST00000466159 ZC3H13Q5T200 1668 aaKnown RBP11.78□□□□□ -0.52
SYNE1-217ENST00000466159 SENP3Q9H4L4 574 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-217ENST00000466159 YEATS2Q9ULM3 1422 aa11.78□□□□□ -0.52
SYNE1-217ENST00000466159 RICTORQ6R327 1708 aa11.78□□□□□ -0.52
SYNE1-217ENST00000466159 IDI1Q13907 227 aa11.77□□□□□ -0.52
SYNE1-217ENST00000466159 ERICH6Q7L0X2 663 aa11.77□□□□□ -0.52
SYNE1-217ENST00000466159 NSD3Q9BZ95 1437 aa11.77□□□□□ -0.52
SYNE1-217ENST00000466159 PIK3C2BO00750 1634 aa11.77□□□□□ -0.52
SYNE1-217ENST00000466159 TNNT2P45379 298 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-217ENST00000466159 SLFN5Q08AF3 891 aa11.77□□□□□ -0.53
SYNE1-217ENST00000466159 SPINK5Q9NQ38 1064 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-217ENST00000466159 VGFO15240 615 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-217ENST00000466159 CYB5RLQ6IPT4 315 aa11.76□□□□□ -0.53
SYNE1-217ENST00000466159 NEXMIFQ5QGS0 1516 aa11.76□□□□□ -0.53
SYNE1-217ENST00000466159 MORC1Q86VD1 984 aa11.75□□□□□ -0.53
SYNE1-217ENST00000466159 GLI2P10070 1586 aa11.75□□□□□ -0.53
SYNE1-217ENST00000466159 TRMT2AQ8IZ69 625 aaKnown RBP11.74□□□□□ -0.53
SYNE1-217ENST00000466159 POLR3AO14802 1390 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-217ENST00000466159 SAFB2Q14151 953 aaKnown RBP eCLIP11.74□□□□□ -0.53
SYNE1-217ENST00000466159 DMRT2Q9Y5R5 561 aa11.74□□□□□ -0.53
SYNE1-217ENST00000466159 ARHGAP31Q2M1Z3 1444 aa11.74□□□□□ -0.53
SYNE1-217ENST00000466159 TCERG1O14776 1098 aaKnown RBP11.73□□□□□ -0.53
SYNE1-217ENST00000466159 SKAP1Q86WV1 359 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms