RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 PTCH1Q13635 1447 aa4.63□□□□□ -1.67
USP40-211ENST00000464956 NCOA3Q9Y6Q9 1424 aa4.63□□□□□ -1.67
USP40-211ENST00000464956 DIP2AQ14689 1571 aa4.62□□□□□ -1.67
USP40-211ENST00000464956 PPP1R15AO75807 674 aaPredicted RBP4.62□□□□□ -1.67
USP40-211ENST00000464956 EZH2Q15910 746 aaKnown RBP4.62□□□□□ -1.67
USP40-211ENST00000464956 CAMSAP2Q08AD1 1489 aa4.62□□□□□ -1.67
USP40-211ENST00000464956 A0A0G2JS52 829 aa4.61□□□□□ -1.67
USP40-211ENST00000464956 MYT1Q01538 1121 aa4.61□□□□□ -1.67
USP40-211ENST00000464956 GPR162Q16538 588 aa4.61□□□□□ -1.67
USP40-211ENST00000464956 FAM161AQ3B820 660 aa4.61□□□□□ -1.67
USP40-211ENST00000464956 BCANQ96GW7 911 aa4.61□□□□□ -1.67
USP40-211ENST00000464956 GPBP1L1Q9HC44 474 aaPredicted RBP4.61□□□□□ -1.67
USP40-211ENST00000464956 NCOA2Q15596 1464 aa4.61□□□□□ -1.67
USP40-211ENST00000464956 ZC3H13Q5T200 1668 aaKnown RBP4.61□□□□□ -1.67
USP40-211ENST00000464956 XIRP1Q702N8 1843 aaKnown RBP4.6□□□□□ -1.67
USP40-211ENST00000464956 DNAJC5GQ8N7S2 189 aa4.6□□□□□ -1.67
USP40-211ENST00000464956 SYT17Q9BSW7 474 aa4.6□□□□□ -1.67
USP40-211ENST00000464956 STAG3Q9UJ98 1225 aa4.6□□□□□ -1.67
USP40-211ENST00000464956 PARD3Q8TEW0 1356 aa4.6□□□□□ -1.67
USP40-211ENST00000464956 DISP2A7MBM2 1401 aa4.6□□□□□ -1.67
USP40-211ENST00000464956 KIF3BO15066 747 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 PLXNC1O60486 1568 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 SLIT1O75093 1534 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 CLIP1P30622 1438 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 UNC5CLQ8IV45 518 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 CAMKK2Q96RR4 588 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 FHDC1Q9C0D6 1143 aaPredicted RBP4.59□□□□□ -1.67
USP40-211ENST00000464956 ARHGAP35Q9NRY4 1499 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 KIDINS220Q9ULH0 1771 aa4.59□□□□□ -1.67
USP40-211ENST00000464956 MROH1Q8NDA8 1641 aa4.58□□□□□ -1.68
USP40-211ENST00000464956 TMEM2Q9UHN6 1383 aa4.58□□□□□ -1.68
USP40-211ENST00000464956 JMYQ8N9B5 988 aa4.58□□□□□ -1.68
USP40-211ENST00000464956 ZNF777Q9ULD5 760 aaPredicted RBP4.58□□□□□ -1.68
USP40-211ENST00000464956 ATP1B4Q9UN42 357 aaPredicted RBP4.58□□□□□ -1.68
USP40-211ENST00000464956 CCDC9Q9Y3X0 531 aaKnown RBP4.58□□□□□ -1.68
USP40-211ENST00000464956 KDM5AP29375 1690 aaKnown RBP4.57□□□□□ -1.68
USP40-211ENST00000464956 SAMD9Q5K651 1589 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 SAMD9LQ8IVG5 1584 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 ASXL1Q8IXJ9 1541 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 TNS2Q63HR2 1409 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 ONECUT3O60422 494 aaPredicted RBP4.57□□□□□ -1.68
USP40-211ENST00000464956 MLLT1Q03111 559 aaPredicted RBP4.57□□□□□ -1.68
USP40-211ENST00000464956 DDX17Q92841 729 aaKnown RBP4.57□□□□□ -1.68
USP40-211ENST00000464956 KLRG1Q96E93 195 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 MYO5CQ9NQX4 1742 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 CAMTA1Q9Y6Y1 1673 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 MAST1Q9Y2H9 1570 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 CEP350Q5VT06 3117 aa4.57□□□□□ -1.68
USP40-211ENST00000464956 DHX29Q7Z478 1369 aaKnown RBP4.56□□□□□ -1.68
USP40-211ENST00000464956 APBA3O96018 575 aa4.56□□□□□ -1.68
USP40-211ENST00000464956 RANGAP1P46060 587 aaPredicted RBP4.56□□□□□ -1.68
USP40-211ENST00000464956 TROQ12816 1431 aaPredicted RBP4.55□□□□□ -1.68
USP40-211ENST00000464956 EP400Q96L91 3159 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 CTTNBP2Q8WZ74 1663 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 VPS72Q15906 364 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 PELP1Q8IZL8 1130 aaKnown RBP4.55□□□□□ -1.68
USP40-211ENST00000464956 ERVK-7P63135 1459 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 SPHKAPQ2M3C7 1700 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 DCCP43146 1447 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 ATP10DQ9P241 1426 aa4.55□□□□□ -1.68
USP40-211ENST00000464956 TRIM37O94972 964 aa4.54□□□□□ -1.68
USP40-211ENST00000464956 ZBTB7AO95365 584 aa4.54□□□□□ -1.68
USP40-211ENST00000464956 PTGER2P43116 358 aa4.54□□□□□ -1.68
USP40-211ENST00000464956 ZNF526Q8TF50 670 aaPredicted RBP4.54□□□□□ -1.68
USP40-211ENST00000464956 FMN1Q68DA7 1419 aa4.54□□□□□ -1.68
USP40-211ENST00000464956 USP19O94966 1318 aa4.53□□□□□ -1.68
USP40-211ENST00000464956 SOS2Q07890 1332 aaPredicted RBP4.53□□□□□ -1.68
USP40-211ENST00000464956 DLC1Q96QB1 1528 aa4.53□□□□□ -1.68
USP40-211ENST00000464956 GRIN3BO60391 1043 aa4.53□□□□□ -1.68
USP40-211ENST00000464956 HSPA1AP0DMV8 641 aaKnown RBP4.53□□□□□ -1.68
USP40-211ENST00000464956 HSPA1BP0DMV9 641 aaKnown RBP4.53□□□□□ -1.68
USP40-211ENST00000464956 FAM182BQ5T319 152 aa4.53□□□□□ -1.68
USP40-211ENST00000464956 FAM196AQ6ZSG2 479 aa4.53□□□□□ -1.68
USP40-211ENST00000464956 ATF5Q9Y2D1 282 aaPredicted RBP4.53□□□□□ -1.68
USP40-211ENST00000464956 ADGRB2O60241 1585 aa4.53□□□□□ -1.69
USP40-211ENST00000464956 GLI3P10071 1580 aa4.53□□□□□ -1.69
USP40-211ENST00000464956 GPATCH8Q9UKJ3 1502 aaKnown RBP4.52□□□□□ -1.69
USP40-211ENST00000464956 ADGBQ8N7X0 1667 aa4.52□□□□□ -1.69
USP40-211ENST00000464956 RPRD2Q5VT52 1461 aaKnown RBP4.52□□□□□ -1.69
USP40-211ENST00000464956 HDGFP51858 240 aaKnown RBP4.52□□□□□ -1.69
USP40-211ENST00000464956 TBX22Q9Y458 520 aa4.52□□□□□ -1.69
USP40-211ENST00000464956 MST1RQ04912 1400 aa4.52□□□□□ -1.69
USP40-211ENST00000464956 KIAA1107Q9UPP5 1409 aa4.52□□□□□ -1.69
USP40-211ENST00000464956 NRKQ7Z2Y5 1582 aa4.52□□□□□ -1.69
USP40-211ENST00000464956 SYCP2Q9BX26 1530 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 TET3O43151 1660 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 MYOM2P54296 1465 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 PLEKHH2Q8IVE3 1493 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 FAM98CQ17RN3 349 aaKnown RBP4.51□□□□□ -1.69
USP40-211ENST00000464956 ARXQ96QS3 562 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 SHANK3Q9BYB0 1731 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 MAP3K5Q99683 1374 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 SLIT2O94813 1529 aa4.51□□□□□ -1.69
USP40-211ENST00000464956 PRXQ9BXM0 1461 aa4.5□□□□□ -1.69
USP40-211ENST00000464956 INO80Q9ULG1 1556 aaPredicted RBP4.5□□□□□ -1.69
USP40-211ENST00000464956 KIF3CO14782 793 aa4.5□□□□□ -1.69
USP40-211ENST00000464956 TOMM70O94826 608 aa4.5□□□□□ -1.69
USP40-211ENST00000464956 HAP1P54257 671 aaPredicted RBP4.5□□□□□ -1.69
USP40-211ENST00000464956 MTFR1LQ9H019 292 aa4.5□□□□□ -1.69
USP40-211ENST00000464956 UBR1Q8IWV7 1749 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms