RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 NECTIN2Q92692 538 aa9.2□□□□□ -0.94
CLK1-208ENST00000464454 WNT2BQ93097 391 aa9.2□□□□□ -0.94
CLK1-208ENST00000464454 LRCH3Q96II8 777 aa9.2□□□□□ -0.94
CLK1-208ENST00000464454 GPCPD1Q9NPB8 672 aa9.2□□□□□ -0.94
CLK1-208ENST00000464454 PDE4DQ08499 809 aa9.19□□□□□ -0.94
CLK1-208ENST00000464454 SLF2Q8IX21 1173 aa9.19□□□□□ -0.94
CLK1-208ENST00000464454 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.19□□□□□ -0.94
CLK1-208ENST00000464454 DAXXQ9UER7 740 aaPredicted RBP9.19□□□□□ -0.94
CLK1-208ENST00000464454 MDM2Q00987 491 aaPredicted RBP9.18□□□□□ -0.94
CLK1-208ENST00000464454 SWT1Q5T5J6 900 aaKnown RBP9.18□□□□□ -0.94
CLK1-208ENST00000464454 SAMD7Q7Z3H4 446 aa9.18□□□□□ -0.94
CLK1-208ENST00000464454 SULF1Q8IWU6 871 aa9.18□□□□□ -0.94
CLK1-208ENST00000464454 RSPH4AQ5TD94 716 aa9.17□□□□□ -0.94
CLK1-208ENST00000464454 PLA2G2EQ9NZK7 142 aa9.17□□□□□ -0.94
CLK1-208ENST00000464454 SOWAHBA6NEL2 793 aa9.16□□□□□ -0.94
CLK1-208ENST00000464454 KCTD12Q96CX2 325 aaKnown RBP9.16□□□□□ -0.94
CLK1-208ENST00000464454 RNF40O75150 1001 aa9.15□□□□□ -0.94
CLK1-208ENST00000464454 PARP9Q8IXQ6 854 aa9.15□□□□□ -0.94
CLK1-208ENST00000464454 NLRP7Q8WX94 980 aa9.15□□□□□ -0.94
CLK1-208ENST00000464454 THSD4Q6ZMP0 1018 aa9.14□□□□□ -0.95
CLK1-208ENST00000464454 TMUB1Q9BVT8 246 aa9.14□□□□□ -0.95
CLK1-208ENST00000464454 GIGYF2Q6Y7W6 1299 aaKnown RBP9.13□□□□□ -0.95
CLK1-208ENST00000464454 BCAMP50895 628 aa9.12□□□□□ -0.95
CLK1-208ENST00000464454 NEUROD2Q15784 382 aa9.12□□□□□ -0.95
CLK1-208ENST00000464454 FAM217BQ9NTX9 383 aaPredicted RBP9.12□□□□□ -0.95
CLK1-208ENST00000464454 TSR3Q9UJK0 312 aaKnown RBP9.12□□□□□ -0.95
CLK1-208ENST00000464454 DDX11L8A8MPP1 907 aa9.11□□□□□ -0.95
CLK1-208ENST00000464454 PPP4CP60510 307 aa9.11□□□□□ -0.95
CLK1-208ENST00000464454 RDH13Q8NBN7 331 aa9.11□□□□□ -0.95
CLK1-208ENST00000464454 PRR14Q9BWN1 585 aa9.11□□□□□ -0.95
CLK1-208ENST00000464454 HPS5Q9UPZ3 1129 aa9.11□□□□□ -0.95
CLK1-208ENST00000464454 NYAP1Q6ZVC0 841 aa9.1□□□□□ -0.95
CLK1-208ENST00000464454 SSTR3P32745 418 aaPredicted RBP9.09□□□□□ -0.95
CLK1-208ENST00000464454 REPIN1Q9BWE0 567 aaKnown RBP9.09□□□□□ -0.95
CLK1-208ENST00000464454 KDM4CQ9H3R0 1056 aa9.09□□□□□ -0.95
CLK1-208ENST00000464454 CD46P15529 392 aa9.08□□□□□ -0.96
CLK1-208ENST00000464454 BRPF1P55201 1214 aaPredicted RBP9.08□□□□□ -0.96
CLK1-208ENST00000464454 KMT5BQ4FZB7 885 aa9.08□□□□□ -0.96
CLK1-208ENST00000464454 SLC10A3P09131 477 aa9.06□□□□□ -0.96
CLK1-208ENST00000464454 PTPN5P54829 565 aa9.06□□□□□ -0.96
CLK1-208ENST00000464454 GPBP1L1Q9HC44 474 aaPredicted RBP9.06□□□□□ -0.96
CLK1-208ENST00000464454 RGS20O76081 388 aa9.05□□□□□ -0.96
CLK1-208ENST00000464454 CFHP08603 1231 aa9.05□□□□□ -0.96
CLK1-208ENST00000464454 DDRGK1Q96HY6 314 aa9.05□□□□□ -0.96
CLK1-208ENST00000464454 WBP1LQ9NX94 342 aa9.05□□□□□ -0.96
CLK1-208ENST00000464454 MS4A1P11836 297 aa9.04□□□□□ -0.96
CLK1-208ENST00000464454 GCGRP47871 477 aa9.04□□□□□ -0.96
CLK1-208ENST00000464454 DIXDC1Q155Q3 683 aa9.03□□□□□ -0.96
CLK1-208ENST00000464454 BEGAINQ9BUH8 593 aa9.03□□□□□ -0.96
CLK1-208ENST00000464454 ACTN4O43707 911 aaKnown RBP9.01□□□□□ -0.97
CLK1-208ENST00000464454 USP46P62068 366 aa9.01□□□□□ -0.97
CLK1-208ENST00000464454 GRIPAP1Q4V328 841 aa9.01□□□□□ -0.97
CLK1-208ENST00000464454 IFFO2Q5TF58 517 aa9.01□□□□□ -0.97
CLK1-208ENST00000464454 NUTM1Q86Y26 1132 aa9.01□□□□□ -0.97
CLK1-208ENST00000464454 KDM4AO75164 1064 aa9□□□□□ -0.97
CLK1-208ENST00000464454 APLP1P51693 650 aa8.99□□□□□ -0.97
CLK1-208ENST00000464454 FAM117AQ9C073 453 aa8.98□□□□□ -0.97
CLK1-208ENST00000464454 RSPH6AQ9H0K4 717 aa8.98□□□□□ -0.97
CLK1-208ENST00000464454 PCDHB3Q9Y5E6 796 aa8.98□□□□□ -0.97
CLK1-208ENST00000464454 ATP6V1AP38606 617 aa8.97□□□□□ -0.97
CLK1-208ENST00000464454 FUT2Q10981 343 aa8.96□□□□□ -0.98
CLK1-208ENST00000464454 SPIRE2Q8WWL2 714 aa8.96□□□□□ -0.98
CLK1-208ENST00000464454 TBC1D2Q9BYX2 928 aa8.96□□□□□ -0.98
CLK1-208ENST00000464454 HOXA2O43364 376 aa8.94□□□□□ -0.98
CLK1-208ENST00000464454 PLEKHG3A1L390 1219 aa8.93□□□□□ -0.98
CLK1-208ENST00000464454 NR1I2O75469 434 aa8.93□□□□□ -0.98
CLK1-208ENST00000464454 GJA5P36382 358 aa8.93□□□□□ -0.98
CLK1-208ENST00000464454 IL27Q8NEV9 243 aa8.93□□□□□ -0.98
CLK1-208ENST00000464454 SH3D19Q5HYK7 790 aa8.92□□□□□ -0.98
CLK1-208ENST00000464454 MORN1Q5T089 497 aa8.92□□□□□ -0.98
CLK1-208ENST00000464454 IL21Q9HBE4 155 aa8.92□□□□□ -0.98
CLK1-208ENST00000464454 MYSM1Q5VVJ2 828 aa8.91□□□□□ -0.98
CLK1-208ENST00000464454 BLOC1S3Q6QNY0 202 aa8.91□□□□□ -0.98
CLK1-208ENST00000464454 MTRQ99707 1265 aa8.91□□□□□ -0.98
CLK1-208ENST00000464454 GOPCQ9HD26 462 aa8.91□□□□□ -0.98
CLK1-208ENST00000464454 Q3C1V9 767 aa8.9□□□□□ -0.98
CLK1-208ENST00000464454 PUS10Q3MIT2 529 aaKnown RBP8.9□□□□□ -0.98
CLK1-208ENST00000464454 MOXD2PA6NHM9 499 aa8.89□□□□□ -0.99
CLK1-208ENST00000464454 ITGBL1O95965 494 aaPredicted RBP8.89□□□□□ -0.99
CLK1-208ENST00000464454 FDX1P10109 184 aa8.89□□□□□ -0.99
CLK1-208ENST00000464454 CLK2P49760 499 aaKnown RBP8.89□□□□□ -0.99
CLK1-208ENST00000464454 COPS2P61201 443 aa8.89□□□□□ -0.99
CLK1-208ENST00000464454 SKIV2LQ15477 1246 aaKnown RBP8.89□□□□□ -0.99
CLK1-208ENST00000464454 RSBN1LQ6PCB5 846 aaPredicted RBP8.89□□□□□ -0.99
CLK1-208ENST00000464454 SPTLC1O15269 473 aa8.88□□□□□ -0.99
CLK1-208ENST00000464454 TUSC1Q2TAM9 212 aa8.88□□□□□ -0.99
CLK1-208ENST00000464454 TJAP1Q5JTD0 557 aa8.88□□□□□ -0.99
CLK1-208ENST00000464454 RIC3Q7Z5B4 369 aa8.88□□□□□ -0.99
CLK1-208ENST00000464454 SALL2Q9Y467 1007 aaPredicted RBP8.88□□□□□ -0.99
CLK1-208ENST00000464454 ZPR1O75312 459 aa8.87□□□□□ -0.99
CLK1-208ENST00000464454 NDUFV2P19404 249 aa8.87□□□□□ -0.99
CLK1-208ENST00000464454 KCNC4Q03721 635 aa8.87□□□□□ -0.99
CLK1-208ENST00000464454 SCUBE3Q8IX30 993 aa8.87□□□□□ -0.99
CLK1-208ENST00000464454 SLC27A5Q9Y2P5 690 aa8.87□□□□□ -0.99
CLK1-208ENST00000464454 A0A0G2JS52 829 aa8.86□□□□□ -0.99
CLK1-208ENST00000464454 FMNL1O95466 1100 aaPredicted RBP8.86□□□□□ -0.99
CLK1-208ENST00000464454 TMEM132AQ24JP5 1023 aa8.86□□□□□ -0.99
CLK1-208ENST00000464454 PCMTD1Q96MG8 357 aaPredicted RBP8.86□□□□□ -0.99
CLK1-208ENST00000464454 IRX2Q9BZI1 471 aaPredicted RBP8.85□□□□□ -0.99
CLK1-208ENST00000464454 POLR3EQ9NVU0 708 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms