RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FAM13BQ9NYF5 915 aa23.3■■□□□ 1.32
CCDC88B-204ENST00000463837 ISY1Q9ULR0 285 aaKnown RBP23.29■■□□□ 1.32
CCDC88B-204ENST00000463837 GAPVD1Q14C86 1478 aa23.28■■□□□ 1.32
CCDC88B-204ENST00000463837 RILPL2Q969X0 211 aa23.27■■□□□ 1.32
CCDC88B-204ENST00000463837 PTPRGP23470 1445 aa23.27■■□□□ 1.32
CCDC88B-204ENST00000463837 GOLGA6L19H0YKK7 550 aa23.27■■□□□ 1.32
CCDC88B-204ENST00000463837 INTS3Q68E01 1043 aaKnown RBP23.27■■□□□ 1.32
CCDC88B-204ENST00000463837 ANKRD50Q9ULJ7 1429 aa23.27■■□□□ 1.32
CCDC88B-204ENST00000463837 NUTM2DQ5VT03 806 aaPredicted RBP23.27■■□□□ 1.32
CCDC88B-204ENST00000463837 EFCAB5A4FU69 1503 aa23.26■■□□□ 1.31
CCDC88B-204ENST00000463837 NCAPD3P42695 1498 aa23.26■■□□□ 1.31
CCDC88B-204ENST00000463837 BACH2Q9BYV9 841 aa23.26■■□□□ 1.31
CCDC88B-204ENST00000463837 RUFY2Q8WXA3 655 aa23.26■■□□□ 1.31
CCDC88B-204ENST00000463837 HFM1A2PYH4 1435 aa23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 NINLQ9Y2I6 1382 aa23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 DIAPH1O60610 1272 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 AMPHP49418 695 aa23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 MTERF4Q7Z6M4 381 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 MAP7D2Q96T17 732 aa23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.25■■□□□ 1.31
CCDC88B-204ENST00000463837 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.24■■□□□ 1.315e-7■■■■■ 105.2
CCDC88B-204ENST00000463837 GORABQ5T7V8 394 aa23.24■■□□□ 1.31
CCDC88B-204ENST00000463837 PDE3AQ14432 1141 aa23.23■■□□□ 1.31
CCDC88B-204ENST00000463837 SF3A1Q15459 793 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-204ENST00000463837 H3BQV1 296 aa23.23■■□□□ 1.31
CCDC88B-204ENST00000463837 IFFO2Q5TF58 517 aa23.23■■□□□ 1.31
CCDC88B-204ENST00000463837 BRPF3Q9ULD4 1205 aa23.23■■□□□ 1.31
CCDC88B-204ENST00000463837 PRXQ9BXM0 1461 aa23.22■■□□□ 1.31
CCDC88B-204ENST00000463837 COG3Q96JB2 828 aa23.22■■□□□ 1.31
CCDC88B-204ENST00000463837 SYNJ1O43426 1573 aa23.22■■□□□ 1.31
CCDC88B-204ENST00000463837 BECN2A8MW95 431 aa23.21■■□□□ 1.31
CCDC88B-204ENST00000463837 RIPK4P57078 832 aa23.21■■□□□ 1.31
CCDC88B-204ENST00000463837 CHMP3Q9Y3E7 222 aa23.21■■□□□ 1.31
CCDC88B-204ENST00000463837 ADAMTS8Q9UP79 889 aa23.21■■□□□ 1.31
CCDC88B-204ENST00000463837 IL27Q8NEV9 243 aa23.2■■□□□ 1.31
CCDC88B-204ENST00000463837 NOC3LQ8WTT2 800 aaKnown RBP23.2■■□□□ 1.31
CCDC88B-204ENST00000463837 EHBP1L1Q8N3D4 1523 aa23.2■■□□□ 1.3
CCDC88B-204ENST00000463837 AKNAQ7Z591 1439 aa23.2■■□□□ 1.3
CCDC88B-204ENST00000463837 TIAM1Q13009 1591 aa23.2■■□□□ 1.3
CCDC88B-204ENST00000463837 CDC45O75419 566 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 TAF7LQ5H9L4 462 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 OSCARQ8IYS5 282 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 TPM2P07951 284 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 FAM184AQ8NB25 1140 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 DIAPH3Q9NSV4 1193 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 TRAK2O60296 914 aa23.19■■□□□ 1.3
CCDC88B-204ENST00000463837 TPM3P06753 285 aa23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 GNAI1P63096 354 aa23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 CCDC39Q9UFE4 941 aa23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 ZKSCAN1P17029 563 aaPredicted RBP23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 PANK1Q8TE04 598 aa23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 PNISRQ8TF01 805 aaKnown RBP23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 SCAPERQ9BY12 1400 aa23.18■■□□□ 1.3
CCDC88B-204ENST00000463837 NASPP49321 788 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-204ENST00000463837 CREBRFQ8IUR6 639 aa23.17■■□□□ 1.3
CCDC88B-204ENST00000463837 WDR97A6NE52 1622 aa23.17■■□□□ 1.3
CCDC88B-204ENST00000463837 ZNF771Q7L3S4 317 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-204ENST00000463837 CLSTN1O94985 981 aa23.16■■□□□ 1.3
CCDC88B-204ENST00000463837 ANO8Q9HCE9 1232 aaPredicted RBP23.16■■□□□ 1.3
CCDC88B-204ENST00000463837 ZNF592Q92610 1267 aa23.16■■□□□ 1.3
CCDC88B-204ENST00000463837 MCTP1Q6DN14 999 aa23.15■■□□□ 1.3
CCDC88B-204ENST00000463837 CDCA7LQ96GN5 454 aa23.15■■□□□ 1.3
CCDC88B-204ENST00000463837 GPS2Q13227 327 aa23.15■■□□□ 1.3
CCDC88B-204ENST00000463837 FRAT2O75474 233 aaPredicted RBP23.14■■□□□ 1.3
CCDC88B-204ENST00000463837 LNPKQ9C0E8 428 aa23.14■■□□□ 1.3
CCDC88B-204ENST00000463837 PPP2R1AP30153 589 aa23.14■■□□□ 1.29
CCDC88B-204ENST00000463837 CYB5RLQ6IPT4 315 aa23.14■■□□□ 1.29
CCDC88B-204ENST00000463837 KIAA1107Q9UPP5 1409 aa23.13■■□□□ 1.29
CCDC88B-204ENST00000463837 ZNF644Q9H582 1327 aaPredicted RBP23.13■■□□□ 1.29
CCDC88B-204ENST00000463837 RAD54L2Q9Y4B4 1467 aa23.12■■□□□ 1.29
CCDC88B-204ENST00000463837 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
CCDC88B-204ENST00000463837 CCAR2Q8N163 923 aaKnown RBP23.11■■□□□ 1.29
CCDC88B-204ENST00000463837 MBD3O95983 291 aa23.11■■□□□ 1.29
CCDC88B-204ENST00000463837 CCDC173Q0VFZ6 552 aa23.11■■□□□ 1.29
CCDC88B-204ENST00000463837 LRRFIP1Q32MZ4 808 aaKnown RBP23.1■■□□□ 1.29
CCDC88B-204ENST00000463837 RNF20Q5VTR2 975 aa23.1■■□□□ 1.29
CCDC88B-204ENST00000463837 ANO2Q9NQ90 1003 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 LETM1O95202 739 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 GTF2E1P29083 439 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 CFTRP13569 1480 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 G3V3G9 751 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 DCAF8Q5TAQ9 597 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 RASSF8Q8NHQ8 419 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 LTV1Q96GA3 475 aaPredicted RBP23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 PDZRN3Q9UPQ7 1066 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 SMC3Q9UQE7 1217 aa23.09■■□□□ 1.29
CCDC88B-204ENST00000463837 HSP90AB4PQ58FF6 505 aa23.08■■□□□ 1.29
CCDC88B-204ENST00000463837 R3HCC1Q9Y3T6 440 aaKnown RBP23.08■■□□□ 1.29
CCDC88B-204ENST00000463837 CT47B1P0C2W7 299 aaPredicted RBP23.07■■□□□ 1.28
CCDC88B-204ENST00000463837 NUTM2FA1L443 756 aa23.07■■□□□ 1.28
CCDC88B-204ENST00000463837 MCM2P49736 904 aa23.07■■□□□ 1.28
CCDC88B-204ENST00000463837 TPM1P09493 284 aa23.07■■□□□ 1.28
CCDC88B-204ENST00000463837 RABEP1Q15276 862 aa23.06■■□□□ 1.28
CCDC88B-204ENST00000463837 NBPF8Q3BBV2 869 aa23.05■■□□□ 1.28
CCDC88B-204ENST00000463837 TEX35Q5T0J7 233 aa23.05■■□□□ 1.28
CCDC88B-204ENST00000463837 GCC1Q96CN9 775 aa23.05■■□□□ 1.28
CCDC88B-204ENST00000463837 TCP11L2Q8N4U5 519 aa23.05■■□□□ 1.28
CCDC88B-204ENST00000463837 A0A0U1RQG5 324 aaPredicted RBP23.04■■□□□ 1.28
CCDC88B-204ENST00000463837 CPLX2Q6PUV4 134 aaKnown RBP23.04■■□□□ 1.28
CCDC88B-204ENST00000463837 TOMM22Q9NS69 142 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms